lobe segmentation with AI

[kekebky]

Hello, I am encountering issues with lobe segmentation. My software version is 5.8.0, and I am using a Windows system. Here is the code:[Python] Failed to compute results: Command '['D:/Slicer 5.8.0/bin/../bin\PythonSlicer.EXE', '-m', 'pip', 'install', 'https://github.com/JoHof/lungmask/archive/master.zip']' returned non-zero exit status 1.
Traceback (most recent call last):
File "D:/Slicer 5.8.0/slicer.org/Extensions-33216/LungCTAnalyzer/lib/Slicer-5.8/qt-scripted-modules/LungCTSegmenter.py", line 2324, in applySegmentation
import lungmask
ModuleNotFoundError: No module named 'lungmask'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "D:/Slicer 5.8.0/slicer.org/Extensions-33216/LungCTAnalyzer/lib/Slicer-5.8/qt-scripted-modules/LungCTSegmenter.py", line 1016, in runProcessing
self.logic.applySegmentation()
File "D:/Slicer 5.8.0/slicer.org/Extensions-33216/LungCTAnalyzer/lib/Slicer-5.8/qt-scripted-modules/LungCTSegmenter.py", line 2328, in applySegmentation
slicer.util.pip_install(lungmaskPackage)
File "D:\Slicer 5.8.0\bin\Python\slicer\util.py", line 3942, in pip_install
_executePythonModule("pip", args)
File "D:\Slicer 5.8.0\bin\Python\slicer\util.py", line 3896, in _executePythonModule
logProcessOutput(proc)
File "D:\Slicer 5.8.0\bin\Python\slicer\util.py", line 3862, in logProcessOutput
raise CalledProcessError(retcode, proc.args, output=proc.stdout, stderr=proc.stderr)
subprocess.CalledProcessError: Command '['D:/Slicer 5.8.0/bin/../bin\PythonSlicer.EXE', '-m', 'pip', 'install', 'https://github.com/JoHof/lungmask/archive/master.zip']' returned non-zero exit status 1.
[VTK] Warning: In vtkMRMLSegmentationDisplayNode.cxx, line 278
[VTK] vtkMRMLSegmentationDisplayNode (000002BAC31F8470): vtkMRMLSegmentationDisplayNode::GetSegmentDisplayProperties: no display properties are found for segment ID=, return default

[JoHof]

It looks like this is an issue related to Slicer3D and the LungCTAnalyzer that is making use of this package and not an issue with the lungmask package

[kekebky]

It looks like this is an issue related to Slicer3D and the LungCTAnalyzer that is making use of this package and not an issue with the lungmask package

Dear teacher, hope this finds you well. As for this problem, I reckon the lung lobe segmentation didn't work out, which caused the subsequent issues. I got an error message after doing the segmentation. Here's my code.

Failed to compute results: Command '['D:/Slicer 5.8.0/bin/../bin\PythonSlicer.EXE', '-m', 'pip', 'install', 'https://github.com/JoHof/lungmask/archive/master.zip']' returned non-zero exit status 1.