NAMESPACE

# Generated by roxygen2: do not edit by hand

export(connect_circ_gene)
export(de_circrna)
export(get_mirna_binding)
export(get_postregulated_gene)
export(launch_shiny)
export(plot_circ)
export(plot_readlen_hist)
export(plot_regulatory_net)
export(read_ciri_output)
export(read_samplefile)
export(run_ciri_full)
import(dplyr)
import(ggnet)
import(ggplot2)
import(limma)
importFrom(Biobase,openPDF)
importFrom(GenomicFeatures,makeTxDbFromGFF)
importFrom(QuasR,qAlign)
importFrom(QuasR,qCount)
importFrom(R.utils,createLink)
importFrom(R.utils,decompressFile)
importFrom(bedr,bedr)
importFrom(bedr,check.binary)
importFrom(edgeR,DGEList)
importFrom(eisaR,getRegionsFromTxDb)
importFrom(eisaR,runEISA)
importFrom(igraph,as_adjacency_matrix)
importFrom(igraph,graph_from_data_frame)
importFrom(magrittr,"%>%")
importFrom(msigdbr,msigdbr)
importFrom(multiMiR,get_multimir)
importFrom(multiMiR,multimir_dbInfoVersions)
importFrom(multiMiR,multimir_switchDBVersion)
importFrom(network,network)
importFrom(network,network.vertex.names)
importFrom(parallel,detectCores)
importFrom(parallel,makeCluster)
importFrom(shiny,runApp)
importFrom(tools,file_ext)
importFrom(tools,file_path_as_absolute)
importFrom(tools,file_path_sans_ext)