();
+ NodeList errorMessages = (NodeList) reader.read("/RECEIPT/MESSAGES/ERROR", XPathConstants.NODESET);
+
+
+ if (errorMessages.getLength() > 0) {
+ for (int experimentIndex = 0; experimentIndex <= errorMessages.getLength(); experimentIndex++) {
+ String error = (String) reader.read("/RECEIPT/MESSAGES/ERROR[" + experimentIndex + "]", XPathConstants.STRING);
+ if (!error.isEmpty()) {
+ errors.add(error);
+ }
+ }
+ }
+ return errors;
+
+ }
+}
diff --git a/src/main/java/org/isatools/isacreator/validateconvert/ui/ENASubmissionUI.java b/src/main/java/org/isatools/isacreator/validateconvert/ui/ENASubmissionUI.java
new file mode 100644
index 00000000..f1f2c13e
--- /dev/null
+++ b/src/main/java/org/isatools/isacreator/validateconvert/ui/ENASubmissionUI.java
@@ -0,0 +1,837 @@
+package org.isatools.isacreator.validateconvert.ui;
+
+import com.explodingpixels.macwidgets.IAppWidgetFactory;
+import com.sun.awt.AWTUtilities;
+import org.apache.log4j.Logger;
+import org.isatools.errorreporter.model.ErrorLevel;
+import org.isatools.errorreporter.model.ErrorMessage;
+import org.isatools.isacreator.common.CommonMouseAdapter;
+import org.isatools.isacreator.common.UIHelper;
+import org.isatools.isacreator.common.button.ButtonType;
+import org.isatools.isacreator.common.button.FlatButton;
+import org.isatools.isacreator.effects.GraphicsUtils;
+import org.isatools.isacreator.effects.HUDTitleBar;
+import org.isatools.isacreator.effects.SimpleListCellRenderer;
+import org.isatools.isacreator.launch.ISAcreatorGUIProperties;
+import org.isatools.isacreator.managers.ApplicationManager;
+import org.isatools.isacreator.model.Investigation;
+import org.isatools.isacreator.model.Study;
+import org.isatools.isacreator.settings.ISAcreatorProperties;
+import org.isatools.isacreator.validateconvert.ui.ENAReceipt.ENAReceipt;
+import org.isatools.isacreator.validateconvert.ui.ENAReceipt.ENAReceiptParser;
+import org.isatools.isatab.export.sra.submission.ENAResponse;
+import org.isatools.isatab.export.sra.submission.ENARestServer;
+import org.isatools.isatab.export.sra.submission.SRASubmitter;
+import org.isatools.isatab.gui_invokers.AllowedConversions;
+import org.isatools.isatab.gui_invokers.GUIISATABValidator;
+import org.isatools.isatab.gui_invokers.GUIInvokerResult;
+import org.isatools.isatab.isaconfigurator.ISAConfigurationSet;
+import org.jdesktop.fuse.InjectedResource;
+import org.jdesktop.fuse.ResourceInjector;
+
+import javax.swing.*;
+import javax.swing.border.EmptyBorder;
+import javax.swing.border.EtchedBorder;
+import javax.swing.event.HyperlinkEvent;
+import javax.swing.event.HyperlinkListener;
+import javax.swing.text.html.HTMLEditorKit;
+import java.awt.*;
+import java.awt.event.FocusEvent;
+import java.awt.event.FocusListener;
+import java.awt.event.MouseEvent;
+import java.io.*;
+import java.net.URISyntaxException;
+import java.util.*;
+import java.util.List;
+
+/**
+ * User intereface for ENA submission.
+ */
+public class ENASubmissionUI extends CommonValidationConversionUI {
+
+ @InjectedResource
+ private ImageIcon submitIcon, created_by, new_sub, new_sub_over, update_sub, update_sub_over,
+ box_icon, metadata_icon, submission_complete, submission_failed, dev_server, dev_server_over, prod_server,
+ prod_server_over, test_server, test_server_over;
+
+ public static final float DESIRED_OPACITY = .98f;
+
+ private static Logger log = Logger.getLogger(ENASubmissionUI.class.getName());
+ private Container metadataPanel, menuPanel, serverPanel;
+
+
+ private JTextField username, centerName, labName, brokerName, studyIdentifier;
+ private JPasswordField password;
+ private JLabel status;
+ private ENARestServer server = ENARestServer.TEST;
+
+ private String sraAction;
+
+ protected static ImageIcon submitENAAnimation = new ImageIcon(ENASubmissionUI.class.getResource("/images/submission/submitting.gif"));
+ protected static ImageIcon convertISAAnimation = new ImageIcon(ENASubmissionUI.class.getResource("/images/validator/converting.gif"));
+
+ public static ENASubmissionUI createENASubmissionUI() {
+ return new ENASubmissionUI();
+ }
+
+ private ENASubmissionUI() {
+ ResourceInjector.get("submission-package.style").inject(true, this);
+ }
+
+ public void createGUI() {
+ setTitle("Submit to ENA");
+ setUndecorated(true);
+ setBackground(UIHelper.BG_COLOR);
+
+ if (GraphicsUtils.isWindowTransparencySupported()) {
+ AWTUtilities.setWindowOpacity(this, DESIRED_OPACITY);
+ }
+
+ HUDTitleBar titlePanel = new HUDTitleBar(null, null);
+
+ add(titlePanel, BorderLayout.NORTH);
+ titlePanel.installListeners();
+
+ ((JComponent) getContentPane()).setBorder(new EtchedBorder(UIHelper.LIGHT_GREEN_COLOR, UIHelper.LIGHT_GREEN_COLOR));
+
+ swappableContainer = new JPanel();
+ swappableContainer.add(createMenu());
+ swappableContainer.setBorder(new EmptyBorder(1, 1, 1, 1));
+ swappableContainer.setPreferredSize(new Dimension(750, 450));
+
+ add(swappableContainer, BorderLayout.CENTER);
+
+ pack();
+
+ }
+
+ public Container createMenu() {
+ menuPanel = Box.createVerticalBox();
+
+ addHeaderImageToContainer(menuPanel);
+
+ final JLabel newSubmission = new JLabel(new_sub);
+
+ newSubmission.addMouseListener(new CommonMouseAdapter() {
+ @Override
+ public void mouseEntered(MouseEvent mouseEvent) {
+ super.mouseEntered(mouseEvent);
+ newSubmission.setIcon(new_sub_over);
+ }
+
+ @Override
+ public void mouseExited(MouseEvent mouseEvent) {
+ super.mouseExited(mouseEvent); //To change body of overridden methods use File | Settings | File Templates.
+ newSubmission.setIcon(new_sub);
+ }
+
+ @Override
+ public void mouseReleased(MouseEvent mouseEvent) {
+ super.mouseReleased(mouseEvent);
+ newSubmission.setIcon(new_sub);
+ sraAction = "ADD";
+ swapContainers(chooseServerUI());
+ }
+ });
+
+ final JLabel updateSubmission = new JLabel(update_sub);
+ updateSubmission.addMouseListener(new CommonMouseAdapter() {
+ @Override
+ public void mouseEntered(MouseEvent mouseEvent) {
+ super.mouseEntered(mouseEvent);
+ updateSubmission.setIcon(update_sub_over);
+ }
+
+ @Override
+ public void mouseExited(MouseEvent mouseEvent) {
+ super.mouseExited(mouseEvent); //To change body of overridden methods use File | Settings | File Templates.
+ updateSubmission.setIcon(update_sub);
+ }
+
+ @Override
+ public void mouseReleased(MouseEvent mouseEvent) {
+ super.mouseReleased(mouseEvent);
+ updateSubmission.setIcon(update_sub);
+ sraAction = "MODIFY";
+ swapContainers(chooseServerUI());
+ }
+ });
+
+ Box menuContainer = Box.createHorizontalBox();
+ menuContainer.add(newSubmission);
+ menuContainer.add(updateSubmission);
+
+ menuPanel.add(menuContainer);
+
+ JPanel created_by_panel = new JPanel();
+ created_by_panel.setBackground(new Color(236, 240, 241));
+ menuPanel.add(UIHelper.wrapComponentInPanel(new JLabel(created_by)));
+
+ menuPanel.add(Box.createVerticalStrut(20));
+
+ return menuPanel;
+ }
+
+ /**
+ * Screen to choose the ENA server (test, dev, prod)
+ * @return
+ */
+ private Container chooseServerUI() {
+ serverPanel = Box.createVerticalBox();
+ serverPanel.setPreferredSize(new Dimension(530, 390));
+
+ addHeaderImageToContainer(serverPanel);
+
+ serverPanel.add(UIHelper.wrapComponentInPanel(UIHelper.createLabel("Please choose a server to upload to: ", UIHelper.VER_14_PLAIN, UIHelper.EMERALD)));
+ serverPanel.add(Box.createVerticalStrut(10));
+
+ final JLabel testServer = new JLabel(test_server);
+ testServer.addMouseListener(new CommonMouseAdapter() {
+ @Override
+ public void mouseEntered(MouseEvent mouseEvent) {
+ super.mouseEntered(mouseEvent);
+ testServer.setIcon(test_server_over);
+ }
+
+ @Override
+ public void mouseExited(MouseEvent mouseEvent) {
+ super.mouseExited(mouseEvent); //To change body of overridden methods use File | Settings | File Templates.
+ testServer.setIcon(test_server);
+ }
+
+ @Override
+ public void mouseReleased(MouseEvent mouseEvent) {
+ super.mouseReleased(mouseEvent);
+ testServer.setIcon(test_server);
+ server = ENARestServer.TEST;
+ swapContainers(createMetadataEntryUI());
+ }
+ });
+
+
+ final JLabel devServer = new JLabel(dev_server);
+ devServer.addMouseListener(new CommonMouseAdapter() {
+ @Override
+ public void mouseEntered(MouseEvent mouseEvent) {
+ super.mouseEntered(mouseEvent);
+ devServer.setIcon(dev_server_over);
+ }
+
+ @Override
+ public void mouseExited(MouseEvent mouseEvent) {
+ super.mouseExited(mouseEvent); //To change body of overridden methods use File | Settings | File Templates.
+ devServer.setIcon(dev_server);
+ }
+
+ @Override
+ public void mouseReleased(MouseEvent mouseEvent) {
+ super.mouseReleased(mouseEvent);
+ devServer.setIcon(dev_server);
+ server = ENARestServer.DEV;
+ swapContainers(createMetadataEntryUI());
+ }
+ });
+
+ final JLabel prodServer = new JLabel(prod_server);
+ prodServer.addMouseListener(new CommonMouseAdapter() {
+ @Override
+ public void mouseEntered(MouseEvent mouseEvent) {
+ super.mouseEntered(mouseEvent);
+ prodServer.setIcon(prod_server_over);
+ }
+
+ @Override
+ public void mouseExited(MouseEvent mouseEvent) {
+ super.mouseExited(mouseEvent); //To change body of overridden methods use File | Settings | File Templates.
+ prodServer.setIcon(prod_server);
+ }
+
+ @Override
+ public void mouseReleased(MouseEvent mouseEvent) {
+ super.mouseReleased(mouseEvent);
+ prodServer.setIcon(prod_server);
+ server = ENARestServer.PROD;
+ swapContainers(createMetadataEntryUI());
+ }
+ });
+
+ Box menuContainer = Box.createHorizontalBox();
+ menuContainer.add(testServer);
+ menuContainer.add(Box.createHorizontalStrut(5));
+ menuContainer.add(devServer);
+ menuContainer.add(Box.createHorizontalStrut(5));
+ menuContainer.add(prodServer);
+
+
+ serverPanel.add(menuContainer);
+
+ serverPanel.add(Box.createVerticalStrut(70));
+
+ return serverPanel;
+ }
+
+
+ private Container createMetadataEntryUI() {
+ metadataPanel = Box.createVerticalBox();
+
+ addHeaderImageToContainer(metadataPanel);
+
+ Box leftAndRightSections = Box.createHorizontalBox();
+
+ Box userLoginSection = createUserLoginSection();
+ leftAndRightSections.add(userLoginSection);
+
+ leftAndRightSections.add(Box.createHorizontalStrut(10));
+ Box metadataSection = createMetadataSection();
+ leftAndRightSections.add(metadataSection);
+
+ metadataPanel.add(leftAndRightSections);
+
+ Box buttonContainer = Box.createHorizontalBox();
+ FlatButton backButton = new FlatButton(ButtonType.RED, "Back");
+ backButton.addMouseListener(new CommonMouseAdapter() {
+ @Override
+ public void mousePressed(MouseEvent mouseEvent) {
+ super.mousePressed(mouseEvent);
+ swapContainers(menuPanel);
+
+ }
+ });
+ FlatButton nextButton = new FlatButton(ButtonType.EMERALD, "Next");
+ nextButton.addMouseListener(new CommonMouseAdapter() {
+ @Override
+ public void mousePressed(MouseEvent mouseEvent) {
+ super.mousePressed(mouseEvent);
+ if (username.getText().equals("") || username.equals("Username") || password.getPassword().length==0){
+
+ status.setText("Please complete username and password! ");
+
+ } else {
+ validateConvertAndSubmitFiles();
+ }
+ }
+ });
+
+ buttonContainer.add(backButton);
+ buttonContainer.add(Box.createHorizontalGlue());
+ buttonContainer.add(nextButton);
+
+ metadataPanel.add(Box.createVerticalStrut(sraAction.equals("MODIFY") ? 20 : 30));
+ metadataPanel.add(buttonContainer);
+
+ return metadataPanel;
+ }
+
+ private void clearStatus(){
+ status.setText("");
+ }
+
+ /**
+ * Creates a Box for the user login
+ * @return Box
+ */
+ private Box createUserLoginSection() {
+ Box userLoginSection = Box.createVerticalBox();
+
+ JLabel enaBoxDetails = new JLabel("ENA Dropbox Credentials", box_icon, JLabel.LEFT);
+ enaBoxDetails.setHorizontalAlignment(SwingConstants.LEFT);
+ UIHelper.renderComponent(enaBoxDetails, UIHelper.VER_12_BOLD, UIHelper.EMERALD, false);
+ userLoginSection.add(UIHelper.wrapComponentInPanel(enaBoxDetails));
+
+ String sra_username = ISAcreatorProperties.getProperty("sra_username");
+ username = new JTextField(sra_username.isEmpty() ? "Username" : sra_username);
+
+ username.addFocusListener(new FocusListener() {
+ public void focusGained(FocusEvent focusEvent) {
+ clearStatus();
+ }
+
+ public void focusLost(FocusEvent focusEvent) {
+ clearStatus();
+ }
+ });
+
+ password = new JPasswordField("");
+
+ password.addFocusListener(new FocusListener() {
+ public void focusGained(FocusEvent focusEvent) {
+ clearStatus();
+ }
+
+ public void focusLost(FocusEvent focusEvent) {
+ clearStatus();
+ }
+ });
+ status = new JLabel();
+ status.setText("");
+ status.setForeground(UIHelper.RED_COLOR);
+ status.setSize(new Dimension(200, 25));
+ status.setOpaque(true);
+
+ userLoginSection.add(createMetadataFieldContainer(username, "Username"));
+ userLoginSection.add(Box.createVerticalStrut(5));
+ userLoginSection.add(createMetadataFieldContainer(password, "Password", 1, 10));
+ userLoginSection.add(Box.createVerticalStrut(5));
+ userLoginSection.add(UIHelper.wrapComponentInPanel(status));
+
+ userLoginSection.add(sraAction.equals("MODIFY")
+ ? Box.createVerticalStrut(75) :
+ Box.createVerticalStrut(45));
+
+ JEditorPane registerInfo = new JEditorPane();
+ registerInfo.setPreferredSize(new Dimension(230, 50));
+ registerInfo.setContentType("text/html");
+ registerInfo.setEditable(false);
+ String label = "Don’t have an account? Create one in EBI metagenomics or EBI ENA
";
+ registerInfo.setText(label);
+ registerInfo.setVisible(true);
+
+ registerInfo.addHyperlinkListener(new HyperlinkListener() {
+ public void hyperlinkUpdate(HyperlinkEvent e) {
+ if (e.getEventType() == HyperlinkEvent.EventType.ACTIVATED) {
+ if (Desktop.isDesktopSupported()) {
+ try {
+ Desktop.getDesktop().browse(e.getURL().toURI());
+ } catch (IOException e1) {
+ e1.printStackTrace();
+ } catch (URISyntaxException e1) {
+ e1.printStackTrace();
+ }
+ }
+ }
+ }
+ });
+
+
+ userLoginSection.add(Box.createVerticalStrut(30));
+ userLoginSection.add(registerInfo);
+
+ return userLoginSection;
+ }
+
+ private Box createMetadataSection() {
+ Box metadataSection = Box.createVerticalBox();
+
+ JLabel metadataDetails = new JLabel("Additional Metadata", metadata_icon, JLabel.LEFT);
+ UIHelper.renderComponent(metadataDetails, UIHelper.VER_12_BOLD, UIHelper.EMERALD, false);
+ metadataSection.add(UIHelper.wrapComponentInPanel(metadataDetails));
+
+ if (sraAction.equals("MODIFY")) {
+ studyIdentifier = new JTextField("e.g. ERAxxxxxx");
+ metadataSection.add(createMetadataFieldContainer(studyIdentifier, "Study Accession"));
+ metadataSection.add(Box.createVerticalStrut(5));
+ }
+
+ centerName = new JTextField("OXFORD");
+ metadataSection.add(createMetadataFieldContainer(centerName, "SRA Centre Name"));
+ metadataSection.add(Box.createVerticalStrut(5));
+
+ brokerName = new JTextField("OXFORD");
+ metadataSection.add(createMetadataFieldContainer(brokerName, "Broker Name", 0, 35));
+ metadataSection.add(Box.createVerticalStrut(5));
+
+ labName = new JTextField("Oxford e-Research Centre");
+ metadataSection.add(createMetadataFieldContainer(labName, "SRA Lab Name", 0, 30));
+ metadataSection.add(Box.createVerticalStrut(50));
+// metadataSection.add(Box.createVerticalGlue());
+
+ JEditorPane submissionInfo = new JEditorPane();
+ submissionInfo.setPreferredSize(new Dimension(350, 40));
+ //UIHelper.renderComponent(submissionInfo, UIHelper.VER_9_PLAIN, new Color(127, 140, 141), false);
+ submissionInfo.setContentType("text/html");
+ submissionInfo.setEditable(false);
+ submissionInfo.setEditorKit(new HTMLEditorKit());
+ String label = "Read more about ENA Submission Requirements...
";
+ submissionInfo.setText(label);
+ submissionInfo.setVisible(true);
+
+ submissionInfo.addHyperlinkListener(new HyperlinkListener() {
+ public void hyperlinkUpdate(HyperlinkEvent e) {
+ if (e.getEventType() == HyperlinkEvent.EventType.ACTIVATED) {
+ if (Desktop.isDesktopSupported()) {
+ try {
+ Desktop.getDesktop().browse(e.getURL().toURI());
+ } catch (IOException e1) {
+ e1.printStackTrace();
+ } catch (URISyntaxException e1) {
+ e1.printStackTrace();
+ }
+ }
+ }
+ }
+ });
+
+ metadataSection.add(submissionInfo);
+
+ return metadataSection;
+ }
+
+ private Container createMetadataFieldContainer(JTextField field, String fieldName) {
+ return createMetadataFieldContainer(field, fieldName, 0, 10);
+ }
+
+ /**
+ * Creates a Container for a metadata field
+ *
+ * @param field - Field to be created and added
+ * @param fieldName - Name to be given to the field
+ * @param type - 0 for JTextField, 1 for JPasswordField
+ * @return a container with the field and it's label in a grey box.
+ */
+ private Container createMetadataFieldContainer(JTextField field, String fieldName, int type, int padding) {
+
+ field.setSize(new Dimension(200, 25));
+ field.setOpaque(true);
+
+ UIHelper.renderComponent(field, UIHelper.VER_10_PLAIN, UIHelper.EMERALD, UIHelper.VERY_LIGHT_GREY_COLOR);
+
+ field.setBorder(null);
+
+ Box fieldContainer = createFieldDetailWrapper(null, fieldName, padding);
+ fieldContainer.add(field);
+
+ return fieldContainer;
+ }
+
+ private Box createFieldDetailWrapper(ImageIcon image_icon, String text, int padding) {
+ Box fieldContainer = Box.createHorizontalBox();
+ fieldContainer.setOpaque(true);
+ fieldContainer.setBackground(UIHelper.VERY_LIGHT_GREY_COLOR);
+ fieldContainer.setBorder(BorderFactory.createLineBorder(UIHelper.VERY_LIGHT_GREY_COLOR, 8));
+
+ if (image_icon != null) {
+ JLabel icon = new JLabel(image_icon);
+ icon.setOpaque(true);
+ icon.setBackground(UIHelper.VERY_LIGHT_GREY_COLOR);
+ fieldContainer.add(icon);
+
+ }
+
+ if (text != null) {
+ JLabel label = UIHelper.createLabel(text, UIHelper.VER_10_BOLD, new Color(127, 140, 141));
+ label.setOpaque(true);
+ label.setBackground(UIHelper.VERY_LIGHT_GREY_COLOR);
+ fieldContainer.add(UIHelper.wrapComponentInPanel(label));
+ }
+
+ Component space = Box.createHorizontalStrut(padding);
+ ((JComponent) space).setOpaque(true);
+ space.setBackground(UIHelper.VERY_LIGHT_GREY_COLOR);
+
+ fieldContainer.add(space);
+ return fieldContainer;
+ }
+
+
+ private void submit(final String sraFolder) {
+
+ Thread performer = new Thread(new Runnable() {
+
+ public void run() {
+ log.info("Current ISA-Tab is: " + ISAcreatorProperties.getProperty(ISAcreatorProperties.CURRENT_ISATAB));
+
+ Box submitProgressContainer = createSubmitProgressContainer();
+ swapContainers(submitProgressContainer);
+
+ SRASubmitter submitter = new SRASubmitter();
+
+ ENAResponse response = submitter.submit(server, username.getText(), new String(password.getPassword()), sraFolder);
+
+ if (response!=null){
+
+ int status = response.getStatus_code();
+ String message = response.getReceipt();
+
+ System.out.println("STATUS is " + status);
+ System.out.println("RECEIPT/MESSAGE is " + message);
+ ENAReceipt receipt = null;
+
+ if (status == 406) {
+ swapContainers(createSubmitFailed(message));
+
+ } else if (status != 200) {
+
+ receipt = ENAReceiptParser.parseReceipt(message);
+ swapContainers(createSubmitFailed(receipt));
+
+ } else {
+
+ receipt = ENAReceiptParser.parseReceipt(message);
+ if (receipt.getErrors().size() > 0) {
+ swapContainers(createSubmitFailed(receipt));
+ } else {
+ swapContainers(createSubmitComplete(receipt));
+ }
+ }
+ }
+ }
+ });
+ performer.start();
+ }
+
+
+ private void validateConvertAndSubmitFiles() {
+ log.info("Current ISA-Tab is: " + ISAcreatorProperties.getProperty(ISAcreatorProperties.CURRENT_ISATAB));
+ ISAConfigurationSet.setConfigPath(ISAcreatorProperties.getProperty(ISAcreatorProperties.CURRENT_CONFIGURATION));
+
+ Investigation investigation = ApplicationManager.getCurrentApplicationInstance().getDataEntryEnvironment().getInvestigation();
+
+ ApplicationManager.getCurrentApplicationInstance().saveISATab();
+
+ ISAcreatorProperties.setProperty("sra_username", username.getText());
+ final Set studies = new HashSet();
+ for (Study study : investigation.getStudies().values()) {
+ studies.add(study.getStudyId());
+
+ study.addComment("Comment[SRA Submission Action]", sraAction);
+ study.addComment("Comment[SRA Broker Name]", brokerName.getText());
+ study.addComment("Comment[SRA Lab Name]", labName.getText());
+ study.addComment("Comment[SRA Center Name]", centerName.getText());
+ study.addComment("Comment[Study Accession]", sraAction.equals("MODIFY") ? studyIdentifier.getText() : "");
+
+ }
+
+ // We're changing the study comments programmatically, so to avoid saving with values currently in the interface,
+ // we save by forcing the UI to not update. This preserves the comment values we've specified above.
+ ISAcreatorProperties.setProperty("DO_NOT_UPDATE_FROM_GUI", "true");
+ ApplicationManager.getCurrentApplicationInstance().saveISATab();
+ ISAcreatorProperties.setProperty("DO_NOT_UPDATE_FROM_GUI", "false");
+
+ swapContainers(UIHelper.padComponentVerticalBox(100, new JLabel(convertISAAnimation)));
+ SwingUtilities.invokeLater(new Runnable() {
+ public void run() {
+
+
+ final GUIISATABValidator isatabValidator = new GUIISATABValidator();
+ GUIInvokerResult result = isatabValidator.validate(ISAcreatorProperties.getProperty(ISAcreatorProperties.CURRENT_ISATAB));
+ final Map> errorMessages = getErrorMessages(isatabValidator.getLog());
+
+ boolean strictValidationEnabled = Boolean.valueOf(ISAcreatorProperties.getProperty(ISAcreatorProperties.STRICT_VALIDATION));
+ log.info("Strict validation on? " + strictValidationEnabled);
+
+ boolean shouldShowErrors = strictValidationEnabled && errorMessages.size() > 0;
+
+ if (result == GUIInvokerResult.SUCCESS && !shouldShowErrors) {
+
+ String outputLocation = System.getProperty("java.io.tmpdir") + "sra/" + System.currentTimeMillis() + "/";
+ new File(outputLocation).mkdirs();
+ result = convertISAtab(isatabValidator.getStore(), AllowedConversions.SRA,
+ ISAcreatorProperties.getProperty(ISAcreatorProperties.CURRENT_ISATAB),
+ outputLocation);
+
+
+ if (result == GUIInvokerResult.SUCCESS || result == GUIInvokerResult.WARNING) {
+ for (String study : studies) {
+ submit(outputLocation + "sra/" + study + "/");
+ }
+ }
+
+ } else
+
+ {
+ log.info("Showing errors and warnings...");
+ SwingUtilities.invokeLater(new Runnable() {
+ public void run() {
+ displayValidationErrorsAndWarnings(errorMessages);
+ }
+ });
+ }
+ }
+ });
+ }
+
+ private Box createSubmitProgressContainer() {
+ Box submitProgressContainer = Box.createVerticalBox();
+ submitProgressContainer.add(Box.createVerticalStrut(40));
+ submitProgressContainer.add(UIHelper.wrapComponentInPanel(new JLabel(submitENAAnimation)));
+ return submitProgressContainer;
+ }
+
+ private Container createSubmitComplete(ENAReceipt receipt) {
+ JPanel submitProgressContainer = new JPanel(new BorderLayout());
+ submitProgressContainer.setPreferredSize(new Dimension(600, 420));
+ submitProgressContainer.add(UIHelper.wrapComponentInPanel(new JLabel(submission_complete)), BorderLayout.NORTH);
+
+ // create 4 lists with the Study, Sample, Experiment and Runs accessions
+ JPanel listPanel = new JPanel(new GridLayout(1, 3));
+ listPanel.setBorder(BorderFactory.createLineBorder(Color.WHITE, 20));
+ listPanel.setSize(new Dimension(600, 420));
+
+ JList studyList = new JList(receipt.getStudyAccessions().toArray());
+ JList experimentList = new JList(receipt.getExperimentAccessions().toArray());
+ JList runList = new JList(receipt.getRunAccessions().toArray());
+ JList sampleList = new JList(receipt.getSampleAccessions().toArray());
+
+ Box studyListContainer = Box.createVerticalBox();
+ JScrollPane studyScroller = createScrollerForList(studyList);
+ JLabel studies = UIHelper.createLabel("Studies", UIHelper.VER_11_BOLD, UIHelper.NEPHRITIS);
+ studies.setToolTipText("ENA accession numbers for the submitted studies");
+ studyListContainer.add(UIHelper.wrapComponentInPanel(studies));
+ studyListContainer.add(studyScroller);
+ listPanel.add(studyListContainer);
+
+ Box experimentListContainer = Box.createVerticalBox();
+ JScrollPane experimentController = createScrollerForList(experimentList);
+ JLabel experiments = UIHelper.createLabel("Experiments", UIHelper.VER_11_BOLD, UIHelper.NEPHRITIS);
+ experiments.setToolTipText("ENA accession numbers for the submitted experiments");
+ experimentListContainer.add(UIHelper.wrapComponentInPanel(experiments));
+ experimentListContainer.add(experimentController);
+ listPanel.add(experimentListContainer);
+
+ Box runListContainer = Box.createVerticalBox();
+ JLabel runs = UIHelper.createLabel("Runs", UIHelper.VER_11_BOLD, UIHelper.NEPHRITIS);
+ runs.setToolTipText("ENA accession numbers for the submitted runs");
+ runListContainer.add(UIHelper.wrapComponentInPanel(runs));
+ JScrollPane runScroller = createScrollerForList(runList);
+ runListContainer.add(runScroller);
+ listPanel.add(runListContainer);
+
+ Box sampleListContainer = Box.createVerticalBox();
+ JLabel samples = UIHelper.createLabel("Samples", UIHelper.VER_11_BOLD, UIHelper.NEPHRITIS);
+ samples.setToolTipText("ENA accession numbers for the submitted samples");
+ sampleListContainer.add(UIHelper.wrapComponentInPanel(samples));
+ JScrollPane sampleScroller = createScrollerForList(sampleList);
+ sampleListContainer.add(sampleScroller);
+ listPanel.add(sampleListContainer);
+
+ submitProgressContainer.add(listPanel);
+
+ FlatButton nextButton = new FlatButton(ButtonType.RED, "Close");
+ nextButton.addMouseListener(new CommonMouseAdapter() {
+ @Override
+ public void mousePressed(MouseEvent mouseEvent) {
+ super.mousePressed(mouseEvent);
+ setVisible(false);
+ ENASubmissionUI.this.dispose();
+ }
+ });
+
+ submitProgressContainer.add(UIHelper.wrapComponentInPanel(nextButton), BorderLayout.SOUTH);
+
+ return submitProgressContainer;
+ }
+
+ private JScrollPane createScrollerForList(JList experimentList) {
+ experimentList.setCellRenderer(new SimpleListCellRenderer());
+ JScrollPane experimentScroller = new JScrollPane(experimentList,
+ JScrollPane.VERTICAL_SCROLLBAR_AS_NEEDED,
+ JScrollPane.HORIZONTAL_SCROLLBAR_AS_NEEDED);
+ experimentScroller.setBorder(new EmptyBorder(0, 0, 0, 0));
+
+ IAppWidgetFactory.makeIAppScrollPane(experimentScroller);
+ return experimentScroller;
+ }
+
+ private Box createSubmitFailed(String message) {
+ Box submitProgressContainer = Box.createVerticalBox();
+
+ submitProgressContainer.add(UIHelper.wrapComponentInPanel(new JLabel(submission_failed)));
+
+ ErrorUI errorContainer = new ErrorUI();
+
+ List errorMessages = new ArrayList();
+ errorMessages.add(new ErrorMessage(ErrorLevel.ERROR, message));
+ errorContainer.constructErrorPane(errorMessages, "Submission");
+ errorContainer.setPreferredSize(new Dimension(650, 300));
+
+ submitProgressContainer.add(errorContainer);
+
+// SUBMIT ANOTHER, OR BACK
+ FlatButton nextButton = new FlatButton(ButtonType.RED, "Back to Submission Screen");
+ nextButton.addMouseListener(new CommonMouseAdapter() {
+ @Override
+ public void mousePressed(MouseEvent mouseEvent) {
+ super.mousePressed(mouseEvent);
+ swapContainers(metadataPanel);
+ }
+ });
+
+ submitProgressContainer.add(Box.createVerticalStrut(20));
+ submitProgressContainer.add(UIHelper.wrapComponentInPanel(nextButton));
+
+ return submitProgressContainer;
+ }
+
+ /**
+ * Creates a box when submission failed
+ *
+ * @param receipt
+ * @return
+ */
+ private Box createSubmitFailed(ENAReceipt receipt) {
+ Box submitProgressContainer = Box.createVerticalBox();
+
+ submitProgressContainer.add(UIHelper.wrapComponentInPanel(new JLabel(submission_failed)));
+
+ ErrorUI errorContainer = new ErrorUI();
+ errorContainer.constructErrorPane(receipt.getMessagesForDisplay("Submission Errors"), "Submission");
+ errorContainer.setPreferredSize(new Dimension(650, 300));
+
+ submitProgressContainer.add(errorContainer);
+
+// SUBMIT ANOTHER, OR BACK
+ FlatButton nextButton = new FlatButton(ButtonType.RED, "Back to Submission Screen");
+ nextButton.addMouseListener(new CommonMouseAdapter() {
+ @Override
+ public void mousePressed(MouseEvent mouseEvent) {
+ super.mousePressed(mouseEvent);
+ swapContainers(metadataPanel);
+ }
+ });
+
+ submitProgressContainer.add(Box.createVerticalStrut(20));
+ submitProgressContainer.add(UIHelper.wrapComponentInPanel(nextButton));
+
+ return submitProgressContainer;
+ }
+
+ private void addHeaderImageToContainer(Container submitProgressContainer) {
+ submitProgressContainer.add(UIHelper.wrapComponentInPanel(new JLabel(submitIcon)));
+ submitProgressContainer.add(Box.createVerticalStrut(20));
+ }
+
+ public static void main(String[] args) {
+ ISAcreatorGUIProperties.setProperties();
+ ENASubmissionUI ui = new ENASubmissionUI();
+ ui.createGUI();
+ ui.setVisible(true);
+
+ Set experiments = new HashSet();
+ experiments.add("ERX546955");
+ experiments.add("ERX546956");
+ experiments.add("ERX546957");
+ experiments.add("ERX546958");
+ experiments.add("ERX546959");
+ experiments.add("ERX546960");
+ experiments.add("ERX546961");
+ experiments.add("ERX546962");
+
+ Set runs = new HashSet();
+ runs.add("ERR546955");
+ runs.add("ERR546956");
+ runs.add("ERR546957");
+ runs.add("ERR546958");
+ runs.add("ERR546959");
+ runs.add("ERR546960");
+ runs.add("ERR546961");
+ runs.add("ERR546962");
+
+ Set samples = new HashSet();
+ samples.add("ERS546955");
+ samples.add("ERS546956");
+ samples.add("ERS546957");
+ samples.add("ERS546958");
+ samples.add("ERS546959");
+ samples.add("ERS546960");
+ samples.add("ERS546961");
+ samples.add("ERS546962");
+
+ Set studies = new HashSet();
+ studies.add("ERP006700");
+
+
+ ENAReceipt receipt = new ENAReceipt(experiments, samples, runs, studies, new HashSet(), new HashSet());
+ ui.swapContainers(ui.createSubmitComplete(receipt));
+ }
+
+}
\ No newline at end of file
diff --git a/src/main/java/org/isatools/isacreator/validateconvert/ui/ConversionErrorUI.java b/src/main/java/org/isatools/isacreator/validateconvert/ui/ErrorUI.java
similarity index 94%
rename from src/main/java/org/isatools/isacreator/validateconvert/ui/ConversionErrorUI.java
rename to src/main/java/org/isatools/isacreator/validateconvert/ui/ErrorUI.java
index 96d3fff1..475d13e0 100644
--- a/src/main/java/org/isatools/isacreator/validateconvert/ui/ConversionErrorUI.java
+++ b/src/main/java/org/isatools/isacreator/validateconvert/ui/ErrorUI.java
@@ -53,18 +53,18 @@ The ISA Team and the ISA software suite have been funded by the EU Carcinogenomi
* Date: 09/09/2011
* Time: 09:56
*/
-public class ConversionErrorUI extends Container {
+public class ErrorUI extends Container {
- public ConversionErrorUI() {
+ public ErrorUI() {
setLayout(new BorderLayout());
}
- public void constructErrorPane(List errorMessages) {
+ public void constructErrorPane(List errorMessages, String action) {
- JLabel info = UIHelper.createLabel("Conversion failed with "
+ JLabel info = UIHelper.createLabel(action+ " failed with "
+ errorMessages.size()
- + (errorMessages.size() > 1 ? " errors" : " error")
+ + (errorMessages.size() > 1 ? " messages" : " message")
+ ". Here is why:", UIHelper.VER_11_BOLD, UIHelper.RED_COLOR);
info.setHorizontalAlignment(SwingConstants.LEFT);
diff --git a/src/main/java/org/isatools/isacreator/validateconvert/ui/ValidateUI.java b/src/main/java/org/isatools/isacreator/validateconvert/ui/ValidateUI.java
index 91634cd3..29c4b4e2 100644
--- a/src/main/java/org/isatools/isacreator/validateconvert/ui/ValidateUI.java
+++ b/src/main/java/org/isatools/isacreator/validateconvert/ui/ValidateUI.java
@@ -38,11 +38,8 @@ The ISA Team and the ISA software suite have been funded by the EU Carcinogenomi
*/
import com.sun.awt.AWTUtilities;
-import org.apache.log4j.Level;
import org.apache.log4j.Logger;
-import org.apache.log4j.spi.LoggingEvent;
import org.isatools.errorreporter.model.*;
-import org.isatools.errorreporter.ui.ErrorReporterView;
import org.isatools.isacreator.common.UIHelper;
import org.isatools.isacreator.effects.FooterPanel;
import org.isatools.isacreator.effects.GraphicsUtils;
@@ -53,15 +50,11 @@ The ISA Team and the ISA software suite have been funded by the EU Carcinogenomi
import org.isatools.isacreator.model.Study;
import org.isatools.isacreator.settings.ISAcreatorProperties;
import org.isatools.isatab.gui_invokers.AllowedConversions;
-import org.isatools.isatab.gui_invokers.GUIISATABConverter;
import org.isatools.isatab.gui_invokers.GUIISATABValidator;
import org.isatools.isatab.gui_invokers.GUIInvokerResult;
import org.isatools.isatab.isaconfigurator.ISAConfigurationSet;
-import org.isatools.tablib.utils.BIIObjectStore;
-import org.isatools.tablib.utils.logging.TabLoggingEventWrapper;
import org.jdesktop.fuse.InjectedResource;
import org.jdesktop.fuse.ResourceInjector;
-import uk.ac.ebi.utils.collections.Pair;
import javax.swing.*;
import javax.swing.border.EmptyBorder;
@@ -73,7 +66,7 @@ The ISA Team and the ISA software suite have been funded by the EU Carcinogenomi
import java.util.*;
import java.util.List;
-public class ValidateUI extends JFrame {
+public class ValidateUI extends CommonValidationConversionUI {
@InjectedResource
private Image validateIcon, validateIconInactive, convertIcon, convertIconInactive;
@@ -90,13 +83,14 @@ public class ValidateUI extends JFrame {
public static final float DESIRED_OPACITY = .93f;
- private JPanel swappableContainer;
+
private OperatingMode mode;
private ConvertUI convertUI;
public ValidateUI(ISAcreator isacreatorEnvironment, OperatingMode mode) {
this.mode = mode;
ResourceInjector.get("validateconvert-package.style").inject(this);
+
this.isacreatorEnvironment = isacreatorEnvironment;
}
@@ -156,7 +150,6 @@ public void run() {
ISAConfigurationSet.setConfigPath(ISAcreatorProperties.getProperty(ISAcreatorProperties.CURRENT_CONFIGURATION));
final GUIISATABValidator isatabValidator = new GUIISATABValidator();
-
GUIInvokerResult result = isatabValidator.validate(ISAcreatorProperties.getProperty(ISAcreatorProperties.CURRENT_ISATAB));
boolean strictValidationEnabled = Boolean.valueOf(ISAcreatorProperties.getProperty(ISAcreatorProperties.STRICT_VALIDATION));
@@ -208,93 +201,7 @@ public void run() {
performer.start();
}
- private void displayValidationErrorsAndWarnings(Map> fileToErrors) {
- List errors = new ArrayList();
- for (String fileName : fileToErrors.keySet()) {
-
- Pair assayAndType = ValidationUtils.resolveFileTypeFromFileName(fileName,
- isacreatorEnvironment.getDataEntryEnvironment().getInvestigation());
-
- errors.add(new ISAFileErrorReport(fileName,
- assayAndType.fst != null ? assayAndType.fst.getTechnologyType() : "",
- assayAndType.fst != null ? assayAndType.fst.getMeasurementEndpoint() : "",
- assayAndType.snd, fileToErrors.get(fileName)));
- }
-
- if (fileToErrors.size() > 0) {
- ErrorReporterView view = new ErrorReporterView(errors);
- view.setPreferredSize(new Dimension(750, 440));
- view.createGUI();
- view.add(UIHelper.createLabel("Validation performed using "
- + ISAcreatorProperties.getProperty(ISAcreatorProperties.CURRENT_CONFIGURATION) + ""),
- BorderLayout.SOUTH);
-
- swapContainers(view);
- } else {
- Container successfulValidationContainer = UIHelper.padComponentVerticalBox(70, new JLabel(validationSuccess));
- swapContainers(successfulValidationContainer);
- }
- }
-
- private Map> getErrorMessages(List logEvents) {
- Map> fileToErrors = new HashMap>();
-
- for (TabLoggingEventWrapper event : logEvents) {
- String fileName = ErrorUtils.extractFileInformation(event.getLogEvent());
-
- if (fileName != null) {
- if (event.getLogEvent().getLevel().toInt() >= Level.WARN_INT) {
- if (!fileToErrors.containsKey(fileName)) {
- fileToErrors.put(fileName, new ArrayList());
- }
- fileToErrors.get(fileName).add(new ErrorMessage(event.getLogEvent().getLevel() == Level.WARN ? ErrorLevel.WARNING : ErrorLevel.ERROR, event.getLogEvent().getMessage().toString()));
- }
- }
- }
- return fileToErrors;
- }
-
- private void convertISAtab(BIIObjectStore store, AllowedConversions conversion,
- String isatabLocation, String outputLocation) {
-
- GUIISATABConverter converter = new GUIISATABConverter();
- GUIInvokerResult result = converter.convert(store, isatabLocation, outputLocation, conversion);
-
- if (result == GUIInvokerResult.SUCCESS) {
-
- Box successContainer = Box.createVerticalBox();
-
- successContainer.add(Box.createVerticalStrut(50));
- successContainer.add(UIHelper.wrapComponentInPanel(new JLabel(conversionSuccess)));
-
- successContainer.add(UIHelper.wrapComponentInPanel(UIHelper.createLabel("" +
- "Conversion was a success." +
- "Files stored in " + outputLocation + "
" +
- "", UIHelper.VER_11_PLAIN, UIHelper.DARK_GREEN_COLOR)));
-
- swapContainers(successContainer);
-
- } else {
-
- List messages = new ArrayList();
-
- for (TabLoggingEventWrapper tlew : converter.getLog()) {
- LoggingEvent le = tlew.getLogEvent();
- if (le.getLevel() == Level.ERROR) {
- messages.add(new ErrorMessage(ErrorLevel.ERROR, le.getMessage().toString()));
- }
- }
-
- ConversionErrorUI errorContainer = new ConversionErrorUI();
- errorContainer.constructErrorPane(messages);
- errorContainer.setPreferredSize(new Dimension(750, 440));
-
- swapContainers(errorContainer);
- }
- }
-
-
- private Collection constructConversionTargets() {
+ public Collection constructConversionTargets() {
Map conversionTargets = new HashMap();
Map studies = isacreatorEnvironment.getDataEntryEnvironment().getInvestigation().getStudies();
@@ -338,26 +245,6 @@ private Collection constructConversionTargets() {
return conversionTargets.values();
}
- private void swapContainers(final Container newContainer) {
-
- SwingUtilities.invokeLater(new Runnable() {
- public void run() {
- if (newContainer != null) {
- swappableContainer.removeAll();
- swappableContainer.add(newContainer);
- swappableContainer.repaint();
- swappableContainer.validate();
- swappableContainer.updateUI();
-
- newContainer.validate();
- newContainer.repaint();
-
- validate();
- repaint();
- }
- }
- });
- }
}
diff --git a/src/main/resources/dependency-injections/gui-package.properties b/src/main/resources/dependency-injections/gui-package.properties
index 19b55650..d38bb5c4 100644
--- a/src/main/resources/dependency-injections/gui-package.properties
+++ b/src/main/resources/dependency-injections/gui-package.properties
@@ -13,6 +13,7 @@ ISAcreator.menuIcon=/images/gui/menu.png
ISAcreator.exitIcon=/images/gui/exit.png
ISAcreator.exportArchiveIcon=/images/gui/exportArchive_Menu.png
ISAcreator.convertIcon=/images/validator/menu_icon_convert.png
+ISAcreator.submitIcon=/images/submission/menu_icon_submit.png
ISAcreator.validateIcon=/images/validator/menu_icon_validate.png
# Study menu items
ISAcreator.addStudyIcon=/images/gui/overtree-menu/add_study.png
diff --git a/src/main/resources/dependency-injections/submission-package.properties b/src/main/resources/dependency-injections/submission-package.properties
new file mode 100644
index 00000000..d87fe930
--- /dev/null
+++ b/src/main/resources/dependency-injections/submission-package.properties
@@ -0,0 +1,25 @@
+ENASubmissionUI.submitIcon=/images/submission/submit-logo.png
+ENASubmissionUI.submitIconInactive=/images/submission/submit-logo-inactive.png
+ENASubmissionUI.submitSuccess=/images/submission/submit-success.png
+ENASubmissionUI.submitFailure=/images/submission/submit-failure.png
+ENASubmissionUI.created_by=/images/submission/created_by.png
+
+ENASubmissionUI.new_sub=/images/submission/new_sub.png
+ENASubmissionUI.new_sub_over=/images/submission/new_sub_over.png
+ENASubmissionUI.update_sub=/images/submission/update_sub.png
+ENASubmissionUI.update_sub_over=/images/submission/update_sub_over.png
+
+ENASubmissionUI.box_icon=/images/submission/box.png
+ENASubmissionUI.metadata_icon=/images/submission/metadata.png
+
+ENASubmissionUI.submission_complete=/images/submission/submission_complete.png
+ENASubmissionUI.submission_failed=/images/submission/submission_failed.png
+
+ENASubmissionUI.dev_server=/images/submission/dev_server.png
+ENASubmissionUI.dev_server_over=/images/submission/dev_server_over.png
+ENASubmissionUI.prod_server=/images/submission/prod_server.png
+ENASubmissionUI.prod_server_over=/images/submission/prod_server_over.png
+ENASubmissionUI.test_server=/images/submission/test_server.png
+ENASubmissionUI.test_server_over=/images/submission/test_server_over.png
+
+ENASubmissionUI.saveISAtab=/images/validator/saveISAtab.png
diff --git a/src/main/resources/images/submission/box.png b/src/main/resources/images/submission/box.png
new file mode 100644
index 00000000..e65f0326
Binary files /dev/null and b/src/main/resources/images/submission/box.png differ
diff --git a/src/main/resources/images/submission/created_by.png b/src/main/resources/images/submission/created_by.png
new file mode 100644
index 00000000..da57c9df
Binary files /dev/null and b/src/main/resources/images/submission/created_by.png differ
diff --git a/src/main/resources/images/submission/dev_server.png b/src/main/resources/images/submission/dev_server.png
new file mode 100644
index 00000000..d0787c4e
Binary files /dev/null and b/src/main/resources/images/submission/dev_server.png differ
diff --git a/src/main/resources/images/submission/dev_server_over.png b/src/main/resources/images/submission/dev_server_over.png
new file mode 100644
index 00000000..71ec1a8c
Binary files /dev/null and b/src/main/resources/images/submission/dev_server_over.png differ
diff --git a/src/main/resources/images/submission/email_icon.png b/src/main/resources/images/submission/email_icon.png
new file mode 100644
index 00000000..552c0ae5
Binary files /dev/null and b/src/main/resources/images/submission/email_icon.png differ
diff --git a/src/main/resources/images/submission/menu_icon_submit.png b/src/main/resources/images/submission/menu_icon_submit.png
new file mode 100644
index 00000000..7539831f
Binary files /dev/null and b/src/main/resources/images/submission/menu_icon_submit.png differ
diff --git a/src/main/resources/images/submission/metadata.png b/src/main/resources/images/submission/metadata.png
new file mode 100644
index 00000000..51bfd840
Binary files /dev/null and b/src/main/resources/images/submission/metadata.png differ
diff --git a/src/main/resources/images/submission/new_sub.png b/src/main/resources/images/submission/new_sub.png
new file mode 100644
index 00000000..fb62ad5d
Binary files /dev/null and b/src/main/resources/images/submission/new_sub.png differ
diff --git a/src/main/resources/images/submission/new_sub_over.png b/src/main/resources/images/submission/new_sub_over.png
new file mode 100644
index 00000000..26975c13
Binary files /dev/null and b/src/main/resources/images/submission/new_sub_over.png differ
diff --git a/src/main/resources/images/submission/password_icon.png b/src/main/resources/images/submission/password_icon.png
new file mode 100644
index 00000000..9d74b078
Binary files /dev/null and b/src/main/resources/images/submission/password_icon.png differ
diff --git a/src/main/resources/images/submission/prod_server.png b/src/main/resources/images/submission/prod_server.png
new file mode 100644
index 00000000..9a53a509
Binary files /dev/null and b/src/main/resources/images/submission/prod_server.png differ
diff --git a/src/main/resources/images/submission/prod_server_over.png b/src/main/resources/images/submission/prod_server_over.png
new file mode 100644
index 00000000..2ab82cc7
Binary files /dev/null and b/src/main/resources/images/submission/prod_server_over.png differ
diff --git a/src/main/resources/images/submission/submission_complete.png b/src/main/resources/images/submission/submission_complete.png
new file mode 100644
index 00000000..5e539d1c
Binary files /dev/null and b/src/main/resources/images/submission/submission_complete.png differ
diff --git a/src/main/resources/images/submission/submission_failed.png b/src/main/resources/images/submission/submission_failed.png
new file mode 100644
index 00000000..b0753dfa
Binary files /dev/null and b/src/main/resources/images/submission/submission_failed.png differ
diff --git a/src/main/resources/images/submission/submit-failure.png b/src/main/resources/images/submission/submit-failure.png
new file mode 100644
index 00000000..a7690302
Binary files /dev/null and b/src/main/resources/images/submission/submit-failure.png differ
diff --git a/src/main/resources/images/submission/submit-logo-inactive.png b/src/main/resources/images/submission/submit-logo-inactive.png
new file mode 100644
index 00000000..42477620
Binary files /dev/null and b/src/main/resources/images/submission/submit-logo-inactive.png differ
diff --git a/src/main/resources/images/submission/submit-logo.png b/src/main/resources/images/submission/submit-logo.png
new file mode 100644
index 00000000..803f89ad
Binary files /dev/null and b/src/main/resources/images/submission/submit-logo.png differ
diff --git a/src/main/resources/images/submission/submit-success.png b/src/main/resources/images/submission/submit-success.png
new file mode 100644
index 00000000..3fa9e139
Binary files /dev/null and b/src/main/resources/images/submission/submit-success.png differ
diff --git a/src/main/resources/images/submission/submitting.gif b/src/main/resources/images/submission/submitting.gif
new file mode 100644
index 00000000..f23b75b5
Binary files /dev/null and b/src/main/resources/images/submission/submitting.gif differ
diff --git a/src/main/resources/images/submission/test_server.png b/src/main/resources/images/submission/test_server.png
new file mode 100644
index 00000000..15789f8c
Binary files /dev/null and b/src/main/resources/images/submission/test_server.png differ
diff --git a/src/main/resources/images/submission/test_server_over.png b/src/main/resources/images/submission/test_server_over.png
new file mode 100644
index 00000000..e1e8bca7
Binary files /dev/null and b/src/main/resources/images/submission/test_server_over.png differ
diff --git a/src/main/resources/images/submission/update_sub.png b/src/main/resources/images/submission/update_sub.png
new file mode 100644
index 00000000..100f8118
Binary files /dev/null and b/src/main/resources/images/submission/update_sub.png differ
diff --git a/src/main/resources/images/submission/update_sub_over.png b/src/main/resources/images/submission/update_sub_over.png
new file mode 100644
index 00000000..8226e36b
Binary files /dev/null and b/src/main/resources/images/submission/update_sub_over.png differ
diff --git a/src/test/java/org/isatools/isacreator/io/ProgrammaticISATabCreationTest.java b/src/test/java/org/isatools/isacreator/io/ProgrammaticISATabCreationTest.java
index d8eaf38b..b78d7c13 100644
--- a/src/test/java/org/isatools/isacreator/io/ProgrammaticISATabCreationTest.java
+++ b/src/test/java/org/isatools/isacreator/io/ProgrammaticISATabCreationTest.java
@@ -8,6 +8,13 @@
import org.isatools.isacreator.io.exportisa.OutputISAFiles;
import org.isatools.isacreator.managers.ConfigurationManager;
import org.isatools.isacreator.model.*;
+import org.isatools.isacreator.ontologymanager.OntologyManager;
+import org.isatools.isacreator.ontologymanager.OntologySourceRefObject;
+import org.isatools.isacreator.ontologymanager.common.OntologyTerm;
+import org.isatools.isacreator.settings.ISAcreatorProperties;
+import org.isatools.isacreator.settings.SettingsUtil;
+import org.isatools.isacreator.spreadsheet.model.TableReferenceObject;
+import org.isatools.isacreator.utils.PropertyFileIO;
import org.junit.Test;
import java.io.File;
@@ -24,7 +31,7 @@
public class ProgrammaticISATabCreationTest {
@Test
- public void createISATabProgrammatically() {
+ public void createISATabProgrammatically1Test() {
String baseDir = System.getProperty("basedir");
@@ -37,12 +44,12 @@ public void createISATabProgrammatically() {
}
}
- ConfigurationManager.loadConfigurations(baseDir + "/Configurations/isaconfig-default_v2014-01-16/");
+ ConfigurationManager.loadConfigurations(baseDir + "/src/main/resources/Configurations/isaconfig-default_v2014-01-16/");
Investigation investigation = new Investigation("gis-investigation", "GIS investigation test");
investigation.addContact(new InvestigationContact("maguire", "eamonn", "J", "eamonnmag@gmail.com", "", "", "", "Oxford University", ""));
investigation.addPublication(new InvestigationPublication("64654", "doi", "E. Maguire", "", ""));
- investigation.addPublication(new InvestigationPublication("634654", "doi", "P Rocca-Serra", "Stupid paper", ""));
+ investigation.addPublication(new InvestigationPublication("634654", "doi", "P Rocca-Serra", "Some paper", ""));
investigation.setFileReference("ProgramData/i_investigation.txt");
Study study = new Study("gis-1");
@@ -62,4 +69,49 @@ public void createISATabProgrammatically() {
ISAFileOutput fileOutput = new OutputISAFiles();
fileOutput.saveISAFiles(true, investigation);
}
+
+ @Test
+ public void createISATabProgrammatically2Test() {
+
+ String baseDir = System.getProperty("basedir");
+
+ if ( baseDir == null )
+ {
+ try{
+ baseDir = new File( "." ).getCanonicalPath();
+ }catch(IOException e){
+ e.printStackTrace();
+ }
+ }
+
+ ISAcreatorProperties.setProperties(PropertyFileIO.DEFAULT_CONFIGS_SETTINGS_PROPERTIES);
+ ConfigurationManager.loadConfigurations(baseDir + "/src/main/resources/Configurations/isaconfig-default_v2014-01-16/");
+ Investigation investigation = new Investigation("gis-investigation", "GIS investigation test");
+
+ investigation.addContact(new InvestigationContact("maguire", "eamonn", "J", "eamonnmag@gmail.com", "", "", "", "Oxford University", ""));
+ investigation.addPublication(new InvestigationPublication("64654", "doi", "E. Maguire", "", ""));
+ investigation.addPublication(new InvestigationPublication("634654", "doi", "P Rocca-Serra", "Some paper", ""));
+ investigation.setFileReference("ProgramData/i_investigation.txt");
+
+ Study study = new Study("gis-1");
+ Assay studySample = new Assay("s_samples.txt", ConfigurationManager.selectTROForUserSelection(MappingObject.STUDY_SAMPLE));
+ study.setStudySamples(studySample);
+
+ TableReferenceObject studySampleTableReferenceObject = studySample.getTableReferenceObject();
+
+ studySampleTableReferenceObject.addRowData(studySampleTableReferenceObject.getHeaders().toArray(
+ new String[]{"Source Name", "Characteristics[organism]", "Protocol REF", "Sample Name"}),
+ new String[]{"source1", "homo sapiens", "sampling", "sample1"});
+
+ OntologyManager.addToOntologyTerms("homo sapiens", new OntologyTerm("homo sapiens", "http://purl.obolibrary.org/obo/NCBITaxon_9606", "http://purl.obolibrary.org/obo/NCBITaxon_9606", new OntologySourceRefObject("NCBITaxon")));
+
+ investigation.addStudy(study);
+
+ Assay testAssay = new Assay("assay_1.txt", "transcription profiling", "DNA microarray", "");
+
+ study.addAssay(testAssay);
+
+ ISAFileOutput fileOutput = new OutputISAFiles();
+ fileOutput.saveISAFiles(true, investigation);
+ }
}
diff --git a/src/test/java/org/isatools/isacreator/io/exportisa/OutputISAFilesTest.java b/src/test/java/org/isatools/isacreator/io/exportisa/OutputISAFilesTest.java
index 18ca4ca7..edde50d2 100644
--- a/src/test/java/org/isatools/isacreator/io/exportisa/OutputISAFilesTest.java
+++ b/src/test/java/org/isatools/isacreator/io/exportisa/OutputISAFilesTest.java
@@ -4,6 +4,8 @@
import org.isatools.isacreator.io.CommonTestIO;
import org.isatools.isacreator.io.importisa.ISAtabFilesImporter;
import org.isatools.isacreator.model.Investigation;
+import org.isatools.isacreator.settings.ISAcreatorProperties;
+import org.isatools.isacreator.utils.PropertyFileIO;
import org.junit.After;
import org.junit.Before;
import org.junit.Test;
@@ -32,7 +34,7 @@ public class OutputISAFilesTest implements CommonTestIO {
@Before
public void setUp() {
String baseDir = System.getProperty("basedir");
-
+ ISAcreatorProperties.setProperties(PropertyFileIO.DEFAULT_CONFIGS_SETTINGS_PROPERTIES);
if ( baseDir == null )
{
try{
@@ -71,6 +73,7 @@ public void saveISAFilesTest(){
assert(importer.getMessages().size()==0);
System.out.println("investigation reference"+inv.getReference());
+
exporter.saveISAFiles(false, inv);
}
}
diff --git a/src/test/java/org/isatools/isacreator/io/importisa/ISAtabFilesImporterTest.java b/src/test/java/org/isatools/isacreator/io/importisa/ISAtabFilesImporterTest.java
index 9ca7e238..f1e7d621 100644
--- a/src/test/java/org/isatools/isacreator/io/importisa/ISAtabFilesImporterTest.java
+++ b/src/test/java/org/isatools/isacreator/io/importisa/ISAtabFilesImporterTest.java
@@ -6,6 +6,10 @@
import org.isatools.isacreator.io.CommonTestIO;
import org.isatools.isacreator.model.Investigation;
import org.isatools.isacreator.ontologymanager.OntologyManager;
+import org.isatools.isacreator.ontologymanager.OntologySourceRefObject;
+import org.isatools.isacreator.ontologymanager.common.OntologyTerm;
+import org.isatools.isacreator.settings.ISAcreatorProperties;
+import org.isatools.isacreator.utils.PropertyFileIO;
import org.junit.After;
import org.junit.Before;
import org.junit.Test;
@@ -48,6 +52,7 @@ public void setUp() {
}
}
+ ISAcreatorProperties.setProperties(PropertyFileIO.DEFAULT_CONFIGS_SETTINGS_PROPERTIES);
configDir = baseDir + DEFAULT_CONFIG_DIR;
log.debug("configDir=" + configDir);
@@ -81,8 +86,52 @@ public void importFileTest() {
System.out.println("ontology description=" + OntologyManager.getOntologyDescription("OBI"));
//System.out.println("ontology selection history=" + OntologyManager.getOntologySelectionHistory());
System.out.println("ontology selection history size=" + OntologyManager.getOntologyTermsSize());
- System.out.println("ontology term=" + OntologyManager.getOntologyTerm("OBI:metabolite profiling"));
+
+ //the assay measurement
+ OntologyTerm ontologyTerm = OntologyManager.getOntologyTerm("OBI:metabolite profiling");
+ OntologySourceRefObject ontologySourceRefObject = ontologyTerm.getOntologySourceInformation();
+ System.out.println("ontology term=" + ontologyTerm);
+ System.out.println("term URI = "+ontologyTerm.getOntologyTermURI());
+ System.out.println(ontologySourceRefObject);
+ assert(!ontologyTerm.getOntologyTermURI().equals(""));
+ assert(ontologySourceRefObject!=null);
+
+ //the study descriptor
+ ontologyTerm = OntologyManager.getOntologyTerm("OBI:intervention design");
+ ontologySourceRefObject = ontologyTerm.getOntologySourceInformation();
+ System.out.println("ontology term=" + ontologyTerm);
+ System.out.println("term URI = "+ontologyTerm.getOntologyTermURI());
+ System.out.println(ontologySourceRefObject);
+ assert(!ontologyTerm.getOntologyTermURI().equals(""));
+ assert(ontologySourceRefObject!=null);
+
+ //an annotation from the study sample table
+ ontologyTerm = OntologyManager.getOntologyTerm("NCBITAXON:Saccharomyces cerevisiae");
+ ontologySourceRefObject = ontologyTerm.getOntologySourceInformation();
+ System.out.println("ontology term=" + ontologyTerm);
+ System.out.println("term URI = "+ontologyTerm.getOntologyTermURI());
+ System.out.println(ontologyTerm.getOntologySourceInformation());
+ assert(!ontologyTerm.getOntologyTermURI().equals(""));
+ assert(ontologySourceRefObject!=null);
+
+ ontologyTerm = OntologyManager.getOntologyTerm("CL:intracellular");
+ ontologySourceRefObject = ontologyTerm.getOntologySourceInformation();
+ System.out.println("ontology term=" + ontologyTerm);
+ System.out.println("term URI = "+ontologyTerm.getOntologyTermURI());
+ System.out.println(ontologySourceRefObject);
+ assert(!ontologyTerm.getOntologyTermURI().equals(""));
+ assert(ontologySourceRefObject!=null);
+
+ ontologyTerm = OntologyManager.getOntologyTerm("CL:extracellular region part");
+ ontologySourceRefObject = ontologyTerm.getOntologySourceInformation();
+ System.out.println("ontology term=" + ontologyTerm);
+ System.out.println("term URI = "+ontologyTerm.getOntologyTermURI());
+ System.out.println(ontologySourceRefObject);
+ assert(!ontologyTerm.getOntologyTermURI().equals(""));
+ assert(ontologySourceRefObject!=null);
+
+ System.out.println(inv.getStudies().size());
assertTrue("Oh no, I didnt' get the expected number of studies :(", inv.getStudies().size() == 2);
}
diff --git a/src/test/resources/test-data/BII-I-1/a_metabolome.txt b/src/test/resources/test-data/BII-I-1/a_metabolome.txt
index cb5b3d64..4f9465c9 100644
--- a/src/test/resources/test-data/BII-I-1/a_metabolome.txt
+++ b/src/test/resources/test-data/BII-I-1/a_metabolome.txt
@@ -1,112 +1,112 @@
-Sample Name Material Type Protocol REF Parameter Value[standard volume] Unit Parameter Value[sample volume] Unit Extract Name MS Assay Name Raw Spectral Data File Comment[Data Repository] Comment[Data Record Accession] Factor Value[limiting nutrient] Factor Value[rate] Unit
-C-0.1-aliquot1 intracellular metabolite extraction 4 microliter 200 microliter S-0.2-aliquot8 JIC36_Sulphate_0.20_Internal_1_3 JIC36_Sulphate_0.20_Internal_1_3.txt elemental sulfur 0.1 l/hour
-P-0.07-aliquot8 intracellular metabolite extraction 4 microliter 200 microliter P-0.07-aliquot8 JIC20_Phosphate_0.07_Internal_1_1 JIC20_Phosphate_0.07_Internal_1_1.txt elemental phosphorus 0.07 l/hr
-P-0.07-aliquot9 intracellular metabolite extraction 4 microliter 200 microliter P-0.07-aliquot9 JIC21_Phosphate_0.07_Internal_2_1 JIC21_Phosphate_0.07_Internal_2_1.txt elemental phosphorus 0.07 l/hr
-P-0.1-aliquot8 intracellular metabolite extraction 4 microliter 200 microliter P-0.1-aliquot8 JIC22_Phosphate_0.10_Internal_1_1 JIC22_Phosphate_0.10_Internal_1_1.txt elemental phosphorus 0.1 l/hr
-P-0.1-aliquot9 intracellular metabolite extraction 4 microliter 200 microliter P-0.1-aliquot9 JIC23_Phosphate_0.10_Internal_2_1 JIC23_Phosphate_0.10_Internal_2_1.txt elemental phosphorus 0.1 l/hr
-P-0.1-aliquot10 intracellular metabolite extraction 4 microliter 200 microliter P-0.1-aliquot10 JIC24_Phosphate_0.10_Internal_3_1 JIC24_Phosphate_0.10_Internal_3_1.txt elemental phosphorus 0.1 l/hr
-P-0.2-aliquot8 intracellular metabolite extraction 4 microliter 200 microliter P-0.2-aliquot8 JIC25_Phosphate_0.20_Internal_1_1 JIC25_Phosphate_0.20_Internal_1_1.txt elemental phosphorus 0.2 l/hr
-P-0.2-aliquot9 intracellular metabolite extraction 4 microliter 200 microliter P-0.2-aliquot9 JIC26_Phosphate_0.20_Internal_2_1 JIC26_Phosphate_0.20_Internal_2_1.txt elemental phosphorus 0.2 l/hr
-P-0.2-aliquot10 intracellular metabolite extraction 4 microliter 200 microliter P-0.2-aliquot10 JIC27_Phosphate_0.20_Internal_3_1 JIC27_Phosphate_0.20_Internal_3_1.txt elemental phosphorus 0.2 l/hr
-N-0.07-aliquot8 intracellular metabolite extraction 4 microliter 200 microliter N-0.07-aliquot8 JIC10_Nitrogen_0.07_Internal_1_1 JIC10_Nitrogen_0.07_Internal_1_1.txt elemental nitrogen 0.07 l/hr
-N-0.07-aliquot8 intracellular metabolite extraction 4 microliter 200 microliter N-0.07-aliquot8 JIC10_Nitrogen_0.07_Internal_1_2 JIC10_Nitrogen_0.07_Internal_1_2.txt elemental nitrogen 0.07 l/hr
-N-0.07-aliquot8 intracellular metabolite extraction 4 microliter 200 microliter N-0.07-aliquot8 JIC10_Nitrogen_0.07_Internal_1_3 JIC10_Nitrogen_0.07_Internal_1_3.txt elemental nitrogen 0.07 l/hr
-N-0.07-aliquot9 intracellular metabolite extraction 4 microliter 200 microliter N-0.07-aliquot9 JIC11_Nitrogen_0.07_Internal_2_1 JIC11_Nitrogen_0.07_Internal_2_1.txt elemental nitrogen 0.07 l/hr
-N-0.07-aliquot10 intracellular metabolite extraction 4 microliter 200 microliter N-0.07-aliquot10 JIC12_Nitrogen_0.07_Internal_3_1 JIC12_Nitrogen_0.07_Internal_3_1.txt elemental nitrogen 0.07 l/hr
-N-0.1-aliquot8 intracellular metabolite extraction 4 microliter 200 microliter N-0.1-aliquot8 JIC13_Nitrogen_0.10_Internal_1_1 JIC13_Nitrogen_0.10_Internal_1_1.txt elemental nitrogen 0.1 l/hr
-N-0.1-aliquot9 intracellular metabolite extraction 4 microliter 200 microliter N-0.1-aliquot9 JIC14_Nitrogen_0.10_Internal_2_1 JIC14_Nitrogen_0.10_Internal_2_1.txt elemental nitrogen 0.1 l/hr
-N-0.1-aliquot10 intracellular metabolite extraction 4 microliter 200 microliter N-0.1-aliquot10 JIC15_Nitrogen_0.10_Internal_3_1 JIC15_Nitrogen_0.10_Internal_3_1.txt elemental nitrogen 0.1 l/hr
-N-0.2-aliquot8 intracellular metabolite extraction 4 microliter 200 microliter N-0.2-aliquot8 JIC16_Nitrogen_0.20_Internal_1_1 JIC16_Nitrogen_0.20_Internal_1_1.txt elemental nitrogen 0.2 l/hr
-N-0.2-aliquot9 intracellular metabolite extraction 4 microliter 200 microliter N-0.2-aliquot9 JIC17_Nitrogen_0.20_Internal_2_1 JIC17_Nitrogen_0.20_Internal_2_1.txt elemental nitrogen 0.2 l/hr
-N-0.2-aliquot10 intracellular metabolite extraction 4 microliter 200 microliter N-0.2-aliquot10 JIC18_Nitrogen_0.20_Internal_3_1 JIC18_Nitrogen_0.20_Internal_3_1.txt elemental nitrogen 0.2 l/hr
-C-0.07-aliquot8 intracellular metabolite extraction 4 microliter 200 microliter C-0.07-aliquot8 JIC1_Carbon_0.07_Internal_1_1 JIC1_Carbon_0.07_Internal_1_1.txt elemental carbon 0.07 l/hr
-C-0.07-aliquot8 intracellular metabolite extraction 4 microliter 200 microliter C-0.07-aliquot8 JIC1_Carbon_0.07_Internal_1_2 JIC1_Carbon_0.07_Internal_1_2.txt elemental carbon 0.07 l/hr
-C-0.07-aliquot8 intracellular metabolite extraction 4 microliter 200 microliter C-0.07-aliquot8 JIC1_Carbon_0.07_Internal_1_3 JIC1_Carbon_0.07_Internal_1_3.txt elemental carbon 0.07 l/hr
-C-0.07-aliquot9 intracellular metabolite extraction 4 microliter 200 microliter C-0.07-aliquot9 JIC2_Carbon_0.07_Internal_2_1 JIC2_Carbon_0.07_Internal_2_1.txt elemental carbon 0.07 l/hr
-C-0.07-aliquot10 intracellular metabolite extraction 4 microliter 200 microliter C-0.07-aliquot10 JIC3_Carbon_0.07_Internal_3_1 JIC3_Carbon_0.07_Internal_3_1.txt elemental carbon 0.07 l/hr
-C-0.1-aliquot8 intracellular metabolite extraction 4 microliter 200 microliter C-0.1-aliquot8 JIC4_Carbon_0.10_Internal_1_1 JIC4_Carbon_0.10_Internal_1_1.txt elemental carbon 0.1 l/hr
-C-0.1-aliquot9 intracellular metabolite extraction 4 microliter 200 microliter C-0.1-aliquot9 JIC5_Carbon_0.10_Internal_2_1 JIC5_Carbon_0.10_Internal_2_1.txt elemental carbon 0.1 l/hr
-C-0.1-aliquot10 intracellular metabolite extraction 4 microliter 200 microliter C-0.1-aliquot10 JIC6_Carbon_0.10_Internal_3_1 JIC6_Carbon_0.10_Internal_3_1.txt elemental carbon 0.1 l/hr
-C-0.2-aliquot8 intracellular metabolite extraction 4 microliter 200 microliter C-0.2-aliquot8 JIC7_Carbon_0.20_Internal_1_1 JIC7_Carbon_0.20_Internal_1_1.txt elemental carbon 0.2 l/hr
-C-0.2-aliquot9 intracellular metabolite extraction 4 microliter 200 microliter C-0.2-aliquot9 JIC8_Carbon_0.20_Internal_2_1 JIC8_Carbon_0.20_Internal_2_1.txt elemental carbon 0.2 l/hr
-C-0.2-aliquot10 intracellular metabolite extraction 4 microliter 200 microliter C-0.2-aliquot10 JIC9_Carbon_0.20_Internal_3_1 JIC9_Carbon_0.20_Internal_3_1.txt elemental carbon 0.2 l/hr
-G-0.07-aliquot4 intracellular metabolite extraction 4 microliter 200 microliter G-0.07-aliquot4 JIC46_GlucoseO2_0.07_Internal_1_1 JIC46_GlucoseO2_0.07_Internal_1_1.txt glucose 0.07 l/hr
-G-0.07-aliquot4 intracellular metabolite extraction 4 microliter 200 microliter G-0.07-aliquot4 JIC46_GlucoseO2_0.07_Internal_1_2 JIC46_GlucoseO2_0.07_Internal_1_2.txt glucose 0.07 l/hr
-G-0.07-aliquot4 intracellular metabolite extraction 4 microliter 200 microliter G-0.07-aliquot4 JIC46_GlucoseO2_0.07_Internal_1_3 JIC46_GlucoseO2_0.07_Internal_1_3.txt glucose 0.07 l/hr
-G-0.07-aliquot5 intracellular metabolite extraction 4 microliter 200 microliter G-0.07-aliquot5 JIC47_GlucoseO2_0.07_Internal_2_1 JIC47_GlucoseO2_0.07_Internal_2_1.txt glucose 0.07 l/hr
-G-0.07-aliquot6 intracellular metabolite extraction 4 microliter 200 microliter G-0.07-aliquot6 JIC48_GlucoseO2_0.07_Internal_3_1 JIC48_GlucoseO2_0.07_Internal_3_1.txt glucose 0.07 l/hr
-G-0.1-aliquot4 intracellular metabolite extraction 4 microliter 200 microliter G-0.1-aliquot4 JIC49_GlucoseO2_0.10_Internal_1_1 JIC49_GlucoseO2_0.10_Internal_1_1.txt glucose 0.1 l/hr
-G-0.1-aliquot5 intracellular metabolite extraction 4 microliter 200 microliter G-0.1-aliquot5 JIC50_GlucoseO2_0.10_Internal_2_1 JIC50_GlucoseO2_0.10_Internal_2_1.txt glucose 0.1 l/hr
-G-0.1-aliquot6 intracellular metabolite extraction 4 microliter 200 microliter G-0.1-aliquot6 JIC51_GlucoseO2_0.10_Internal_3_1 JIC51_GlucoseO2_0.10_Internal_3_1.txt glucose 0.1 l/hr
-G-0.2-aliquot4 intracellular metabolite extraction 4 microliter 200 microliter G-0.2-aliquot4 JIC52_GlucoseO2_0.20_Internal_1_1 JIC52_GlucoseO2_0.20_Internal_1_1.txt glucose 0.2 l/hr
-G-0.2-aliquot5 intracellular metabolite extraction 4 microliter 200 microliter G-0.2-aliquot5 JIC53_GlucoseO2_0.20_Internal_2_1 JIC53_GlucoseO2_0.20_Internal_2_1.txt glucose 0.2 l/hr
-G-0.2-aliquot6 intracellular metabolite extraction 4 microliter 200 microliter G-0.2-aliquot6 JIC54_GlucoseO2_0.20_Internal_3_1 JIC54_GlucoseO2_0.20_Internal_3_1.txt glucose 0.2 l/hr
-E-0.07-aliquot1 intracellular metabolite extraction 4 microliter 200 microliter E-0.07-aliquot1 JIC37_Ethanol_0.07_Internal_1_1 JIC37_Ethanol_0.07_Internal_1_1.txt ethanol 0.07 l/hr
-E-0.07-aliquot1 intracellular metabolite extraction 4 microliter 200 microliter E-0.07-aliquot1 JIC37_Ethanol_0.07_Internal_1_2 JIC37_Ethanol_0.07_Internal_1_2.txt ethanol 0.07 l/hr
-E-0.07-aliquot1 intracellular metabolite extraction 4 microliter 200 microliter E-0.07-aliquot1 JIC37_Ethanol_0.07_Internal_1_3 JIC37_Ethanol_0.07_Internal_1_3.txt ethanol 0.07 l/hr
-E-0.07-aliquot2 intracellular metabolite extraction 4 microliter 200 microliter E-0.07-aliquot2 JIC38_Ethanol_0.07_Internal_2_1 JIC38_Ethanol_0.07_Internal_2_1.txt ethanol 0.07 l/hr
-E-0.07-aliquot3 intracellular metabolite extraction 4 microliter 200 microliter E-0.07-aliquot3 JIC39_Ethanol_0.07_Internal_3_1 JIC39_Ethanol_0.07_Internal_3_1.txt ethanol 0.07 l/hr
-E-0.1-aliquot1 intracellular metabolite extraction 4 microliter 200 microliter E-0.1-aliquot1 JIC40_Ethanol_0.10_Internal_1_1 JIC40_Ethanol_0.10_Internal_1_1.txt ethanol 0.1 l/hr
-E-0.1-aliquot2 intracellular metabolite extraction 4 microliter 200 microliter E-0.1-aliquot2 JIC41_Ethanol_0.10_Internal_2_1 JIC41_Ethanol_0.10_Internal_2_1.txt ethanol 0.1 l/hr
-E-0.1-aliquot3 intracellular metabolite extraction 4 microliter 200 microliter E-0.1-aliquot3 JIC42_Ethanol_0.10_Internal_3_1 JIC42_Ethanol_0.10_Internal_3_1.txt ethanol 0.1 l/hr
-S-0.07-aliquot5 extracellular region part metabolite extraction 20 microliter 1000 microliter S-0.07-aliquot5 JIC82_Sulphate_0.07_External_1_1 JIC82_Sulphate_0.07_External_1_1.txt elemental sulfur 0.07 l/hr
-S-0.07-aliquot6 extracellular region part metabolite extraction 20 microliter 1000 microliter S-0.07-aliquot6 JIC83_Sulphate_0.07_External_2_1 JIC83_Sulphate_0.07_External_2_1.txt elemental sulfur 0.07 l/hr
-S-0.07-aliquot7 extracellular region part metabolite extraction 20 microliter 1000 microliter S-0.07-aliquot7 JIC84_Sulphate_0.07_External_3_1 JIC84_Sulphate_0.07_External_3_1.txt elemental sulfur 0.07 l/hr
-S-0.07-aliquot5 extracellular region part metabolite extraction 20 microliter 1000 microliter S-0.07-aliquot5 JIC82_Sulphate_0.07_External_1_2 JIC82_Sulphate_0.07_External_1_2.txt elemental sulfur 0.07 l/hr
-S-0.07-aliquot5 extracellular region part metabolite extraction 20 microliter 1000 microliter S-0.07-aliquot5 JIC82_Sulphate_0.07_External_1_3 JIC82_Sulphate_0.07_External_1_3.txt elemental sulfur 0.07 l/hr
-S-0.1-aliquot5 extracellular region part metabolite extraction 20 microliter 1000 microliter S-0.1-aliquot5 JIC85_Sulphate_0.10_External_1_1 JIC85_Sulphate_0.10_External_1_1.txt elemental sulfur 0.1 l/hr
-S-0.1-aliquot6 extracellular region part metabolite extraction 20 microliter 1000 microliter S-0.1-aliquot6 JIC86_Sulphate_0.10_External_2_1 JIC86_Sulphate_0.10_External_2_1.txt elemental sulfur 0.1 l/hr
-S-0.2-aliquot5 extracellular region part metabolite extraction 20 microliter 1000 microliter S-0.2-aliquot5 JIC88_Sulphate_0.20_External_1_1 JIC88_Sulphate_0.20_External_1_1.txt elemental sulfur 0.2 l/hr
-S-0.2-aliquot6 extracellular region part metabolite extraction 20 microliter 1000 microliter S-0.2-aliquot6 JIC89_Sulphate_0.20_External_2_1 JIC89_Sulphate_0.20_External_2_1.txt elemental sulfur 0.2 l/hr
-S-0.2-aliquot7 extracellular region part metabolite extraction 20 microliter 1000 microliter S-0.2-aliquot7 JIC90_Sulphate_0.20_External_3_1 JIC90_Sulphate_0.20_External_3_1.txt elemental sulfur 0.2 l/hr
-P-0.07-aliquot5 extracellular region part metabolite extraction 20 microliter 1000 microliter P-0.07-aliquot5 JIC73_Phosphate_0.07_External_1_1 JIC73_Phosphate_0.07_External_1_1.txt elemental phosphorus 0.07 l/hr
-P-0.07-aliquot6 extracellular region part metabolite extraction 20 microliter 1000 microliter P-0.07-aliquot6 JIC73_Phosphate_0.07_External_1_2 JIC73_Phosphate_0.07_External_1_2.txt elemental phosphorus 0.07 l/hr
-P-0.07-aliquot7 extracellular region part metabolite extraction 20 microliter 1000 microliter P-0.07-aliquot7 JIC73_Phosphate_0.07_External_1_3 JIC73_Phosphate_0.07_External_1_3.txt elemental phosphorus 0.07 l/hr
-P-0.07-aliquot5 extracellular region part metabolite extraction 20 microliter 1000 microliter P-0.07-aliquot5 JIC74_Phosphate_0.07_External_2_1 JIC74_Phosphate_0.07_External_2_1.txt elemental phosphorus 0.07 l/hr
-P-0.07-aliquot5 extracellular region part metabolite extraction 20 microliter 1000 microliter P-0.07-aliquot5 JIC75_Phosphate_0.07_External_3_1 JIC75_Phosphate_0.07_External_3_1.txt elemental phosphorus 0.07 l/hr
-P-0.1-aliquot5 extracellular region part metabolite extraction 20 microliter 1000 microliter P-0.1-aliquot5 JIC76_Phosphate_0.10_External_1_1 JIC76_Phosphate_0.10_External_1_1.txt elemental phosphorus 0.1 l/hr
-P-0.1-aliquot6 extracellular region part metabolite extraction 20 microliter 1000 microliter P-0.1-aliquot6 JIC77_Phosphate_0.10_External_2_1 JIC77_Phosphate_0.10_External_2_1.txt elemental phosphorus 0.1 l/hr
-P-0.1-aliquot7 extracellular region part metabolite extraction 20 microliter 1000 microliter P-0.1-aliquot7 JIC78_Phosphate_0.10_External_3_1 JIC78_Phosphate_0.10_External_3_1.txt elemental phosphorus 0.1 l/hr
-P-0.2-aliquot5 extracellular region part metabolite extraction 20 microliter 1000 microliter P-0.2-aliquot5 JIC79_Phosphate_0.20_External_1_1 JIC79_Phosphate_0.20_External_1_1.txt elemental phosphorus 0.2 l/hr
-P-0.2-aliquot6 extracellular region part metabolite extraction 20 microliter 1000 microliter P-0.2-aliquot6 JIC80_Phosphate_0.20_External_2_1 JIC80_Phosphate_0.20_External_2_1.txt elemental phosphorus 0.2 l/hr
-P-0.2-aliquot7 extracellular region part metabolite extraction 20 microliter 1000 microliter P-0.2-aliquot7 JIC81_Phosphate_0.20_External_3_1 JIC81_Phosphate_0.20_External_3_1.txt elemental phosphorus 0.2 l/hr
-N-0.07-aliquot5 extracellular region part metabolite extraction 20 microliter 1000 microliter N-0.07-aliquot5 JIC64_Nitrogen_0.07_External_1_1 JIC64_Nitrogen_0.07_External_1_1.txt elemental nitrogen 0.07 l/hr
-N-0.07-aliquot5 extracellular region part metabolite extraction 20 microliter 1000 microliter N-0.07-aliquot5 JIC64_Nitrogen_0.07_External_1_2 JIC64_Nitrogen_0.07_External_1_2.txt elemental nitrogen 0.07 l/hr
-N-0.07-aliquot5 extracellular region part metabolite extraction 20 microliter 1000 microliter N-0.07-aliquot5 JIC64_Nitrogen_0.07_External_1_3 JIC64_Nitrogen_0.07_External_1_3.txt elemental nitrogen 0.07 l/hr
-N-0.07-aliquot6 extracellular region part metabolite extraction 20 microliter 1000 microliter N-0.07-aliquot6 JIC65_Nitrogen_0.07_External_2_1 JIC65_Nitrogen_0.07_External_2_1.txt elemental nitrogen 0.07 l/hr
-N-0.07-aliquot7 extracellular region part metabolite extraction 20 microliter 1000 microliter N-0.07-aliquot7 JIC66_Nitrogen_0.07_External_3_1 JIC66_Nitrogen_0.07_External_3_1.txt elemental nitrogen 0.07 l/hr
-N-0.1-aliquot5 extracellular region part metabolite extraction 20 microliter 1000 microliter N-0.1-aliquot5 JIC67_Nitrogen_0.10_External_1_1 JIC67_Nitrogen_0.10_External_1_1.txt elemental nitrogen 0.1 l/hr
-N-0.1-aliquot6 extracellular region part metabolite extraction 20 microliter 1000 microliter N-0.1-aliquot6 JIC68_Nitrogen_0.10_External_2_1 JIC68_Nitrogen_0.10_External_2_1.txt elemental nitrogen 0.1 l/hr
-N-0.1-aliquot7 extracellular region part metabolite extraction 20 microliter 1000 microliter N-0.1-aliquot7 JIC69_Nitrogen_0.10_External_3_1 JIC69_Nitrogen_0.10_External_3_1.txt elemental nitrogen 0.1 l/hr
-N-0.2-aliquot5 extracellular region part metabolite extraction 20 microliter 1000 microliter N-0.2-aliquot5 JIC70_Nitrogen_0.20_External_1_1 JIC70_Nitrogen_0.20_External_1_1.txt elemental nitrogen 0.2 l/hr
-N-0.2-aliquot6 extracellular region part metabolite extraction 20 microliter 1000 microliter N-0.2-aliquot6 JIC71_Nitrogen_0.20_External_2_1 JIC71_Nitrogen_0.20_External_2_1.txt elemental nitrogen 0.2 l/hr
-N-0.2-aliquot7 extracellular region part metabolite extraction 20 microliter 1000 microliter N-0.2-aliquot7 JIC72_Nitrogen_0.20_External_3_1 JIC72_Nitrogen_0.20_External_3_1.txt elemental nitrogen 0.2 l/hr
-C-0.07-aliquot5 extracellular region part metabolite extraction 20 microliter 1000 microliter C-0.07-aliquot5 JIC55_Carbon_0.07_External_1_1 JIC55_Carbon_0.07_External_1_1.txt elemental carbon 0.07 l/hr
-C-0.07-aliquot5 extracellular region part metabolite extraction 20 microliter 1000 microliter C-0.07-aliquot5 JIC55_Carbon_0.07_External_1_2 JIC55_Carbon_0.07_External_1_2.txt elemental carbon 0.07 l/hr
-C-0.07-aliquot5 extracellular region part metabolite extraction 20 microliter 1000 microliter C-0.07-aliquot5 JIC55_Carbon_0.07_External_1_3 JIC55_Carbon_0.07_External_1_3.txt elemental carbon 0.07 l/hr
-C-0.07-aliquot6 extracellular region part metabolite extraction 20 microliter 1000 microliter C-0.07-aliquot6 JIC56_Carbon_0.07_External_2_1 JIC56_Carbon_0.07_External_2_1.txt elemental carbon 0.07 l/hr
-C-0.07-aliquot7 extracellular region part metabolite extraction 20 microliter 1000 microliter C-0.07-aliquot7 JIC57_Carbon_0.07_External_3_1 JIC57_Carbon_0.07_External_3_1.txt elemental carbon 0.07 l/hr
-C-0.1-aliquot5 extracellular region part metabolite extraction 20 microliter 1000 microliter C-0.1-aliquot5 JIC58_Carbon_0.10_External_1_1 JIC58_Carbon_0.10_External_1_1.txt elemental carbon 0.1 l/hr
-C-0.1-aliquot6 extracellular region part metabolite extraction 20 microliter 1000 microliter C-0.1-aliquot6 JIC59_Carbon_0.10_External_2_1 JIC59_Carbon_0.10_External_2_1.txt elemental carbon 0.1 l/hr
-C-0.1-aliquot7 extracellular region part metabolite extraction 20 microliter 1000 microliter C-0.1-aliquot7 JIC60_Carbon_0.10_External_3_1 JIC60_Carbon_0.10_External_3_1.txt elemental carbon 0.1 l/hr
-C-0.2-aliquot5 extracellular region part metabolite extraction 20 microliter 1000 microliter C-0.2-aliquot5 JIC61_Carbon_0.20_External_1_1 JIC61_Carbon_0.20_External_1_1.txt elemental carbon 0.2 l/hr
-C-0.2-aliquot6 extracellular region part metabolite extraction 20 microliter 1000 microliter C-0.2-aliquot6 JIC62_Carbon_0.20_External_2_1 JIC62_Carbon_0.20_External_2_1.txt elemental carbon 0.2 l/hr
-C-0.2-aliquot7 extracellular region part metabolite extraction 20 microliter 1000 microliter C-0.2-aliquot7 JIC63_Carbon_0.20_External_3_1 JIC63_Carbon_0.20_External_3_1.txt elemental carbon 0.2 l/hr
-G-0.07-aliquot1 extracellular region part metabolite extraction 20 microliter 1000 microliter G-0.07-aliquot1 JIC100_GlucoseO2_0.07_External_1_1 JIC100_GlucoseO2_0.07_External_1_1.txt glucose 0.07 l/hr
-G-0.07-aliquot1 extracellular region part metabolite extraction 20 microliter 1000 microliter G-0.07-aliquot1 JIC100_GlucoseO2_0.07_External_1_2 JIC100_GlucoseO2_0.07_External_1_2.txt glucose 0.07 l/hr
-G-0.07-aliquot2 extracellular region part metabolite extraction 20 microliter 1000 microliter G-0.07-aliquot2 JIC101_GlucoseO2_0.07_External_2_1 JIC101_GlucoseO2_0.07_External_2_1.txt glucose 0.07 l/hr
-G-0.07-aliquot3 extracellular region part metabolite extraction 20 microliter 1000 microliter G-0.07-aliquot3 JIC102_GlucoseO2_0.07_External_3_1 JIC102_GlucoseO2_0.07_External_3_1.txt glucose 0.07 l/hr
-G-0.1-aliquot1 extracellular region part metabolite extraction 20 microliter 1000 microliter G-0.1-aliquot1 JIC103_GlucoseO2_0.10_External_1_1 JIC103_GlucoseO2_0.10_External_1_1.txt glucose 0.1 l/hr
-G-0.1-aliquot2 extracellular region part metabolite extraction 20 microliter 1000 microliter G-0.1-aliquot2 JIC104_GlucoseO2_0.10_External_2_1 JIC104_GlucoseO2_0.10_External_2_1.txt glucose 0.1 l/hr
-G-0.1-aliquot3 extracellular region part metabolite extraction 20 microliter 1000 microliter G-0.1-aliquot3 JIC105_GlucoseO2_0.10_External_3_1 JIC105_GlucoseO2_0.10_External_3_1.txt glucose 0.1 l/hr
-G-0.2-aliquot1 extracellular region part metabolite extraction 20 microliter 1000 microliter G-0.2-aliquot1 JIC106_GlucoseO2_0.20_External_1_1 JIC106_GlucoseO2_0.20_External_1_1.txt glucose 0.2 l/hr
-G-0.2-aliquot2 extracellular region part metabolite extraction 20 microliter 1000 microliter G-0.2-aliquot2 JIC107_GlucoseO2_0.20_External_2_1 JIC107_GlucoseO2_0.20_External_2_1.txt glucose 0.2 l/hr
-G-0.2-aliquot3 extracellular region part metabolite extraction 20 microliter 1000 microliter G-0.2-aliquot3 JIC108_GlucoseO2_0.20_External_3_1 JIC108_GlucoseO2_0.20_External_3_1.txt glucose 0.2 l/hr
-E-0.07-aliquot4 extracellular region part metabolite extraction 20 microliter 1000 microliter E-0.07-aliquot4 JIC91_Ethanol_0.07_External_1_1 JIC91_Ethanol_0.07_External_1_1.txt ethanol 0.07 l/hr
-E-0.07-aliquot4 extracellular region part metabolite extraction 20 microliter 1000 microliter E-0.07-aliquot4 JIC91_Ethanol_0.07_External_1_2 JIC91_Ethanol_0.07_External_1_2.txt ethanol 0.07 l/hr
-E-0.07-aliquot4 extracellular region part metabolite extraction 20 microliter 1000 microliter E-0.07-aliquot4 JIC91_Ethanol_0.07_External_1_3 JIC91_Ethanol_0.07_External_1_3.txt ethanol 0.07 l/hr
-E-0.07-aliquot5 extracellular region part metabolite extraction 20 microliter 1000 microliter E-0.07-aliquot5 JIC92_Ethanol_0.07_External_2_1 JIC92_Ethanol_0.07_External_2_1.txt ethanol 0.07 l/hr
-E-0.07-aliquot6 extracellular region part metabolite extraction 20 microliter 1000 microliter E-0.07-aliquot6 JIC93_Ethanol_0.07_External_3_1 JIC93_Ethanol_0.07_External_3_1.txt ethanol 0.07 l/hr
-E-0.1-aliquot4 extracellular region part metabolite extraction 20 microliter 1000 microliter E-0.1-aliquot4 JIC94_Ethanol_0.10_External_1_1 JIC94_Ethanol_0.10_External_1_1.txt ethanol 0.1 l/hr
-E-0.1-aliquot5 extracellular region part metabolite extraction 20 microliter 1000 microliter E-0.1-aliquot5 JIC95_Ethanol_0.10_External_2_1 JIC95_Ethanol_0.10_External_2_1.txt ethanol 0.1 l/hr
-E-0.1-aliquot6 extracellular region part metabolite extraction 20 microliter 1000 microliter E-0.1-aliquot6 JIC96_Ethanol_0.10_External_3_1 JIC96_Ethanol_0.10_External_3_1.txt ethanol 0.1 l/hr
+"Sample Name" "Material Type" "Term Source REF" "Term Accession Number" "Protocol REF" "Parameter Value[standard volume]" "Unit" "Term Source REF" "Term Accession Number" "Parameter Value[sample volume]" "Unit" "Term Source REF" "Term Accession Number" "Extract Name" "MS Assay Name" "Raw Spectral Data File" "Comment[Data Repository]" "Comment[Data Record Accession]" "Factor Value[limiting nutrient]" "Term Source REF" "Term Accession Number" "Factor Value[rate]" "Unit" "Term Source REF" "Term Accession Number"
+"C-0.1-aliquot1" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "S-0.2-aliquot8" "JIC36_Sulphate_0.20_Internal_1_3" "JIC36_Sulphate_0.20_Internal_1_3.txt" "" "" "elemental sulfur" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33403" "0.1" "l/hour" "" ""
+"P-0.07-aliquot8" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "P-0.07-aliquot8" "JIC20_Phosphate_0.07_Internal_1_1" "JIC20_Phosphate_0.07_Internal_1_1.txt" "" "" "elemental phosphorus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33464" "0.07" "l/hr" "" ""
+"P-0.07-aliquot9" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "P-0.07-aliquot9" "JIC21_Phosphate_0.07_Internal_2_1" "JIC21_Phosphate_0.07_Internal_2_1.txt" "" "" "elemental phosphorus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33464" "0.07" "l/hr" "" ""
+"P-0.1-aliquot8" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "P-0.1-aliquot8" "JIC22_Phosphate_0.10_Internal_1_1" "JIC22_Phosphate_0.10_Internal_1_1.txt" "" "" "elemental phosphorus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33464" "0.1" "l/hr" "" ""
+"P-0.1-aliquot9" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "P-0.1-aliquot9" "JIC23_Phosphate_0.10_Internal_2_1" "JIC23_Phosphate_0.10_Internal_2_1.txt" "" "" "elemental phosphorus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33464" "0.1" "l/hr" "" ""
+"P-0.1-aliquot10" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "P-0.1-aliquot10" "JIC24_Phosphate_0.10_Internal_3_1" "JIC24_Phosphate_0.10_Internal_3_1.txt" "" "" "elemental phosphorus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33464" "0.1" "l/hr" "" ""
+"P-0.2-aliquot8" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "P-0.2-aliquot8" "JIC25_Phosphate_0.20_Internal_1_1" "JIC25_Phosphate_0.20_Internal_1_1.txt" "" "" "elemental phosphorus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33464" "0.2" "l/hr" "" ""
+"P-0.2-aliquot9" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "P-0.2-aliquot9" "JIC26_Phosphate_0.20_Internal_2_1" "JIC26_Phosphate_0.20_Internal_2_1.txt" "" "" "elemental phosphorus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33464" "0.2" "l/hr" "" ""
+"P-0.2-aliquot10" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "P-0.2-aliquot10" "JIC27_Phosphate_0.20_Internal_3_1" "JIC27_Phosphate_0.20_Internal_3_1.txt" "" "" "elemental phosphorus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33464" "0.2" "l/hr" "" ""
+"N-0.07-aliquot8" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "N-0.07-aliquot8" "JIC10_Nitrogen_0.07_Internal_1_1" "JIC10_Nitrogen_0.07_Internal_1_1.txt" "" "" "elemental nitrogen" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33267" "0.07" "l/hr" "" ""
+"N-0.07-aliquot8" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "N-0.07-aliquot8" "JIC10_Nitrogen_0.07_Internal_1_2" "JIC10_Nitrogen_0.07_Internal_1_2.txt" "" "" "elemental nitrogen" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33267" "0.07" "l/hr" "" ""
+"N-0.07-aliquot8" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "N-0.07-aliquot8" "JIC10_Nitrogen_0.07_Internal_1_3" "JIC10_Nitrogen_0.07_Internal_1_3.txt" "" "" "elemental nitrogen" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33267" "0.07" "l/hr" "" ""
+"N-0.07-aliquot9" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "N-0.07-aliquot9" "JIC11_Nitrogen_0.07_Internal_2_1" "JIC11_Nitrogen_0.07_Internal_2_1.txt" "" "" "elemental nitrogen" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33267" "0.07" "l/hr" "" ""
+"N-0.07-aliquot10" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "N-0.07-aliquot10" "JIC12_Nitrogen_0.07_Internal_3_1" "JIC12_Nitrogen_0.07_Internal_3_1.txt" "" "" "elemental nitrogen" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33267" "0.07" "l/hr" "" ""
+"N-0.1-aliquot8" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "N-0.1-aliquot8" "JIC13_Nitrogen_0.10_Internal_1_1" "JIC13_Nitrogen_0.10_Internal_1_1.txt" "" "" "elemental nitrogen" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33267" "0.1" "l/hr" "" ""
+"N-0.1-aliquot9" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "N-0.1-aliquot9" "JIC14_Nitrogen_0.10_Internal_2_1" "JIC14_Nitrogen_0.10_Internal_2_1.txt" "" "" "elemental nitrogen" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33267" "0.1" "l/hr" "" ""
+"N-0.1-aliquot10" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "N-0.1-aliquot10" "JIC15_Nitrogen_0.10_Internal_3_1" "JIC15_Nitrogen_0.10_Internal_3_1.txt" "" "" "elemental nitrogen" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33267" "0.1" "l/hr" "" ""
+"N-0.2-aliquot8" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "N-0.2-aliquot8" "JIC16_Nitrogen_0.20_Internal_1_1" "JIC16_Nitrogen_0.20_Internal_1_1.txt" "" "" "elemental nitrogen" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33267" "0.2" "l/hr" "" ""
+"N-0.2-aliquot9" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "N-0.2-aliquot9" "JIC17_Nitrogen_0.20_Internal_2_1" "JIC17_Nitrogen_0.20_Internal_2_1.txt" "" "" "elemental nitrogen" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33267" "0.2" "l/hr" "" ""
+"N-0.2-aliquot10" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "N-0.2-aliquot10" "JIC18_Nitrogen_0.20_Internal_3_1" "JIC18_Nitrogen_0.20_Internal_3_1.txt" "" "" "elemental nitrogen" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33267" "0.2" "l/hr" "" ""
+"C-0.07-aliquot8" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "C-0.07-aliquot8" "JIC1_Carbon_0.07_Internal_1_1" "JIC1_Carbon_0.07_Internal_1_1.txt" "" "" "elemental carbon" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33415" "0.07" "l/hr" "" ""
+"C-0.07-aliquot8" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "C-0.07-aliquot8" "JIC1_Carbon_0.07_Internal_1_2" "JIC1_Carbon_0.07_Internal_1_2.txt" "" "" "elemental carbon" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33415" "0.07" "l/hr" "" ""
+"C-0.07-aliquot8" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "C-0.07-aliquot8" "JIC1_Carbon_0.07_Internal_1_3" "JIC1_Carbon_0.07_Internal_1_3.txt" "" "" "elemental carbon" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33415" "0.07" "l/hr" "" ""
+"C-0.07-aliquot9" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "C-0.07-aliquot9" "JIC2_Carbon_0.07_Internal_2_1" "JIC2_Carbon_0.07_Internal_2_1.txt" "" "" "elemental carbon" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33415" "0.07" "l/hr" "" ""
+"C-0.07-aliquot10" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "C-0.07-aliquot10" "JIC3_Carbon_0.07_Internal_3_1" "JIC3_Carbon_0.07_Internal_3_1.txt" "" "" "elemental carbon" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33415" "0.07" "l/hr" "" ""
+"C-0.1-aliquot8" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "C-0.1-aliquot8" "JIC4_Carbon_0.10_Internal_1_1" "JIC4_Carbon_0.10_Internal_1_1.txt" "" "" "elemental carbon" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33415" "0.1" "l/hr" "" ""
+"C-0.1-aliquot9" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "C-0.1-aliquot9" "JIC5_Carbon_0.10_Internal_2_1" "JIC5_Carbon_0.10_Internal_2_1.txt" "" "" "elemental carbon" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33415" "0.1" "l/hr" "" ""
+"C-0.1-aliquot10" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "C-0.1-aliquot10" "JIC6_Carbon_0.10_Internal_3_1" "JIC6_Carbon_0.10_Internal_3_1.txt" "" "" "elemental carbon" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33415" "0.1" "l/hr" "" ""
+"C-0.2-aliquot8" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "C-0.2-aliquot8" "JIC7_Carbon_0.20_Internal_1_1" "JIC7_Carbon_0.20_Internal_1_1.txt" "" "" "elemental carbon" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33415" "0.2" "l/hr" "" ""
+"C-0.2-aliquot9" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "C-0.2-aliquot9" "JIC8_Carbon_0.20_Internal_2_1" "JIC8_Carbon_0.20_Internal_2_1.txt" "" "" "elemental carbon" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33415" "0.2" "l/hr" "" ""
+"C-0.2-aliquot10" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "C-0.2-aliquot10" "JIC9_Carbon_0.20_Internal_3_1" "JIC9_Carbon_0.20_Internal_3_1.txt" "" "" "elemental carbon" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33415" "0.2" "l/hr" "" ""
+"G-0.07-aliquot4" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "G-0.07-aliquot4" "JIC46_GlucoseO2_0.07_Internal_1_1" "JIC46_GlucoseO2_0.07_Internal_1_1.txt" "" "" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.07" "l/hr" "" ""
+"G-0.07-aliquot4" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "G-0.07-aliquot4" "JIC46_GlucoseO2_0.07_Internal_1_2" "JIC46_GlucoseO2_0.07_Internal_1_2.txt" "" "" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.07" "l/hr" "" ""
+"G-0.07-aliquot4" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "G-0.07-aliquot4" "JIC46_GlucoseO2_0.07_Internal_1_3" "JIC46_GlucoseO2_0.07_Internal_1_3.txt" "" "" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.07" "l/hr" "" ""
+"G-0.07-aliquot5" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "G-0.07-aliquot5" "JIC47_GlucoseO2_0.07_Internal_2_1" "JIC47_GlucoseO2_0.07_Internal_2_1.txt" "" "" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.07" "l/hr" "" ""
+"G-0.07-aliquot6" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "G-0.07-aliquot6" "JIC48_GlucoseO2_0.07_Internal_3_1" "JIC48_GlucoseO2_0.07_Internal_3_1.txt" "" "" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.07" "l/hr" "" ""
+"G-0.1-aliquot4" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "G-0.1-aliquot4" "JIC49_GlucoseO2_0.10_Internal_1_1" "JIC49_GlucoseO2_0.10_Internal_1_1.txt" "" "" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.1" "l/hr" "" ""
+"G-0.1-aliquot5" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "G-0.1-aliquot5" "JIC50_GlucoseO2_0.10_Internal_2_1" "JIC50_GlucoseO2_0.10_Internal_2_1.txt" "" "" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.1" "l/hr" "" ""
+"G-0.1-aliquot6" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "G-0.1-aliquot6" "JIC51_GlucoseO2_0.10_Internal_3_1" "JIC51_GlucoseO2_0.10_Internal_3_1.txt" "" "" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.1" "l/hr" "" ""
+"G-0.2-aliquot4" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "G-0.2-aliquot4" "JIC52_GlucoseO2_0.20_Internal_1_1" "JIC52_GlucoseO2_0.20_Internal_1_1.txt" "" "" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.2" "l/hr" "" ""
+"G-0.2-aliquot5" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "G-0.2-aliquot5" "JIC53_GlucoseO2_0.20_Internal_2_1" "JIC53_GlucoseO2_0.20_Internal_2_1.txt" "" "" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.2" "l/hr" "" ""
+"G-0.2-aliquot6" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "G-0.2-aliquot6" "JIC54_GlucoseO2_0.20_Internal_3_1" "JIC54_GlucoseO2_0.20_Internal_3_1.txt" "" "" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.2" "l/hr" "" ""
+"E-0.07-aliquot1" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "E-0.07-aliquot1" "JIC37_Ethanol_0.07_Internal_1_1" "JIC37_Ethanol_0.07_Internal_1_1.txt" "" "" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.07" "l/hr" "" ""
+"E-0.07-aliquot1" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "E-0.07-aliquot1" "JIC37_Ethanol_0.07_Internal_1_2" "JIC37_Ethanol_0.07_Internal_1_2.txt" "" "" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.07" "l/hr" "" ""
+"E-0.07-aliquot1" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "E-0.07-aliquot1" "JIC37_Ethanol_0.07_Internal_1_3" "JIC37_Ethanol_0.07_Internal_1_3.txt" "" "" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.07" "l/hr" "" ""
+"E-0.07-aliquot2" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "E-0.07-aliquot2" "JIC38_Ethanol_0.07_Internal_2_1" "JIC38_Ethanol_0.07_Internal_2_1.txt" "" "" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.07" "l/hr" "" ""
+"E-0.07-aliquot3" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "E-0.07-aliquot3" "JIC39_Ethanol_0.07_Internal_3_1" "JIC39_Ethanol_0.07_Internal_3_1.txt" "" "" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.07" "l/hr" "" ""
+"E-0.1-aliquot1" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "E-0.1-aliquot1" "JIC40_Ethanol_0.10_Internal_1_1" "JIC40_Ethanol_0.10_Internal_1_1.txt" "" "" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.1" "l/hr" "" ""
+"E-0.1-aliquot2" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "E-0.1-aliquot2" "JIC41_Ethanol_0.10_Internal_2_1" "JIC41_Ethanol_0.10_Internal_2_1.txt" "" "" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.1" "l/hr" "" ""
+"E-0.1-aliquot3" "intracellular" "CL" "http://purl.obolibrary.org/obo/GO_0005622" "metabolite extraction" "4" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "200" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "E-0.1-aliquot3" "JIC42_Ethanol_0.10_Internal_3_1" "JIC42_Ethanol_0.10_Internal_3_1.txt" "" "" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.1" "l/hr" "" ""
+"S-0.07-aliquot5" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "S-0.07-aliquot5" "JIC82_Sulphate_0.07_External_1_1" "JIC82_Sulphate_0.07_External_1_1.txt" "" "" "elemental sulfur" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33403" "0.07" "l/hr" "" ""
+"S-0.07-aliquot6" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "S-0.07-aliquot6" "JIC83_Sulphate_0.07_External_2_1" "JIC83_Sulphate_0.07_External_2_1.txt" "" "" "elemental sulfur" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33403" "0.07" "l/hr" "" ""
+"S-0.07-aliquot7" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "S-0.07-aliquot7" "JIC84_Sulphate_0.07_External_3_1" "JIC84_Sulphate_0.07_External_3_1.txt" "" "" "elemental sulfur" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33403" "0.07" "l/hr" "" ""
+"S-0.07-aliquot5" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "S-0.07-aliquot5" "JIC82_Sulphate_0.07_External_1_2" "JIC82_Sulphate_0.07_External_1_2.txt" "" "" "elemental sulfur" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33403" "0.07" "l/hr" "" ""
+"S-0.07-aliquot5" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "S-0.07-aliquot5" "JIC82_Sulphate_0.07_External_1_3" "JIC82_Sulphate_0.07_External_1_3.txt" "" "" "elemental sulfur" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33403" "0.07" "l/hr" "" ""
+"S-0.1-aliquot5" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "S-0.1-aliquot5" "JIC85_Sulphate_0.10_External_1_1" "JIC85_Sulphate_0.10_External_1_1.txt" "" "" "elemental sulfur" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33403" "0.1" "l/hr" "" ""
+"S-0.1-aliquot6" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "S-0.1-aliquot6" "JIC86_Sulphate_0.10_External_2_1" "JIC86_Sulphate_0.10_External_2_1.txt" "" "" "elemental sulfur" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33403" "0.1" "l/hr" "" ""
+"S-0.2-aliquot5" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "S-0.2-aliquot5" "JIC88_Sulphate_0.20_External_1_1" "JIC88_Sulphate_0.20_External_1_1.txt" "" "" "elemental sulfur" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33403" "0.2" "l/hr" "" ""
+"S-0.2-aliquot6" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "S-0.2-aliquot6" "JIC89_Sulphate_0.20_External_2_1" "JIC89_Sulphate_0.20_External_2_1.txt" "" "" "elemental sulfur" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33403" "0.2" "l/hr" "" ""
+"S-0.2-aliquot7" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "S-0.2-aliquot7" "JIC90_Sulphate_0.20_External_3_1" "JIC90_Sulphate_0.20_External_3_1.txt" "" "" "elemental sulfur" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33403" "0.2" "l/hr" "" ""
+"P-0.07-aliquot5" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "P-0.07-aliquot5" "JIC73_Phosphate_0.07_External_1_1" "JIC73_Phosphate_0.07_External_1_1.txt" "" "" "elemental phosphorus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33464" "0.07" "l/hr" "" ""
+"P-0.07-aliquot6" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "P-0.07-aliquot6" "JIC73_Phosphate_0.07_External_1_2" "JIC73_Phosphate_0.07_External_1_2.txt" "" "" "elemental phosphorus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33464" "0.07" "l/hr" "" ""
+"P-0.07-aliquot7" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "P-0.07-aliquot7" "JIC73_Phosphate_0.07_External_1_3" "JIC73_Phosphate_0.07_External_1_3.txt" "" "" "elemental phosphorus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33464" "0.07" "l/hr" "" ""
+"P-0.07-aliquot5" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "P-0.07-aliquot5" "JIC74_Phosphate_0.07_External_2_1" "JIC74_Phosphate_0.07_External_2_1.txt" "" "" "elemental phosphorus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33464" "0.07" "l/hr" "" ""
+"P-0.07-aliquot5" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "P-0.07-aliquot5" "JIC75_Phosphate_0.07_External_3_1" "JIC75_Phosphate_0.07_External_3_1.txt" "" "" "elemental phosphorus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33464" "0.07" "l/hr" "" ""
+"P-0.1-aliquot5" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "P-0.1-aliquot5" "JIC76_Phosphate_0.10_External_1_1" "JIC76_Phosphate_0.10_External_1_1.txt" "" "" "elemental phosphorus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33464" "0.1" "l/hr" "" ""
+"P-0.1-aliquot6" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "P-0.1-aliquot6" "JIC77_Phosphate_0.10_External_2_1" "JIC77_Phosphate_0.10_External_2_1.txt" "" "" "elemental phosphorus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33464" "0.1" "l/hr" "" ""
+"P-0.1-aliquot7" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "P-0.1-aliquot7" "JIC78_Phosphate_0.10_External_3_1" "JIC78_Phosphate_0.10_External_3_1.txt" "" "" "elemental phosphorus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33464" "0.1" "l/hr" "" ""
+"P-0.2-aliquot5" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "P-0.2-aliquot5" "JIC79_Phosphate_0.20_External_1_1" "JIC79_Phosphate_0.20_External_1_1.txt" "" "" "elemental phosphorus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33464" "0.2" "l/hr" "" ""
+"P-0.2-aliquot6" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "P-0.2-aliquot6" "JIC80_Phosphate_0.20_External_2_1" "JIC80_Phosphate_0.20_External_2_1.txt" "" "" "elemental phosphorus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33464" "0.2" "l/hr" "" ""
+"P-0.2-aliquot7" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "P-0.2-aliquot7" "JIC81_Phosphate_0.20_External_3_1" "JIC81_Phosphate_0.20_External_3_1.txt" "" "" "elemental phosphorus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33464" "0.2" "l/hr" "" ""
+"N-0.07-aliquot5" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "N-0.07-aliquot5" "JIC64_Nitrogen_0.07_External_1_1" "JIC64_Nitrogen_0.07_External_1_1.txt" "" "" "elemental nitrogen" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33267" "0.07" "l/hr" "" ""
+"N-0.07-aliquot5" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "N-0.07-aliquot5" "JIC64_Nitrogen_0.07_External_1_2" "JIC64_Nitrogen_0.07_External_1_2.txt" "" "" "elemental nitrogen" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33267" "0.07" "l/hr" "" ""
+"N-0.07-aliquot5" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "N-0.07-aliquot5" "JIC64_Nitrogen_0.07_External_1_3" "JIC64_Nitrogen_0.07_External_1_3.txt" "" "" "elemental nitrogen" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33267" "0.07" "l/hr" "" ""
+"N-0.07-aliquot6" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "N-0.07-aliquot6" "JIC65_Nitrogen_0.07_External_2_1" "JIC65_Nitrogen_0.07_External_2_1.txt" "" "" "elemental nitrogen" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33267" "0.07" "l/hr" "" ""
+"N-0.07-aliquot7" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "N-0.07-aliquot7" "JIC66_Nitrogen_0.07_External_3_1" "JIC66_Nitrogen_0.07_External_3_1.txt" "" "" "elemental nitrogen" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33267" "0.07" "l/hr" "" ""
+"N-0.1-aliquot5" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "N-0.1-aliquot5" "JIC67_Nitrogen_0.10_External_1_1" "JIC67_Nitrogen_0.10_External_1_1.txt" "" "" "elemental nitrogen" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33267" "0.1" "l/hr" "" ""
+"N-0.1-aliquot6" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "N-0.1-aliquot6" "JIC68_Nitrogen_0.10_External_2_1" "JIC68_Nitrogen_0.10_External_2_1.txt" "" "" "elemental nitrogen" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33267" "0.1" "l/hr" "" ""
+"N-0.1-aliquot7" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "N-0.1-aliquot7" "JIC69_Nitrogen_0.10_External_3_1" "JIC69_Nitrogen_0.10_External_3_1.txt" "" "" "elemental nitrogen" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33267" "0.1" "l/hr" "" ""
+"N-0.2-aliquot5" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "N-0.2-aliquot5" "JIC70_Nitrogen_0.20_External_1_1" "JIC70_Nitrogen_0.20_External_1_1.txt" "" "" "elemental nitrogen" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33267" "0.2" "l/hr" "" ""
+"N-0.2-aliquot6" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "N-0.2-aliquot6" "JIC71_Nitrogen_0.20_External_2_1" "JIC71_Nitrogen_0.20_External_2_1.txt" "" "" "elemental nitrogen" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33267" "0.2" "l/hr" "" ""
+"N-0.2-aliquot7" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "N-0.2-aliquot7" "JIC72_Nitrogen_0.20_External_3_1" "JIC72_Nitrogen_0.20_External_3_1.txt" "" "" "elemental nitrogen" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33267" "0.2" "l/hr" "" ""
+"C-0.07-aliquot5" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "C-0.07-aliquot5" "JIC55_Carbon_0.07_External_1_1" "JIC55_Carbon_0.07_External_1_1.txt" "" "" "elemental carbon" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33415" "0.07" "l/hr" "" ""
+"C-0.07-aliquot5" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "C-0.07-aliquot5" "JIC55_Carbon_0.07_External_1_2" "JIC55_Carbon_0.07_External_1_2.txt" "" "" "elemental carbon" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33415" "0.07" "l/hr" "" ""
+"C-0.07-aliquot5" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "C-0.07-aliquot5" "JIC55_Carbon_0.07_External_1_3" "JIC55_Carbon_0.07_External_1_3.txt" "" "" "elemental carbon" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33415" "0.07" "l/hr" "" ""
+"C-0.07-aliquot6" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "C-0.07-aliquot6" "JIC56_Carbon_0.07_External_2_1" "JIC56_Carbon_0.07_External_2_1.txt" "" "" "elemental carbon" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33415" "0.07" "l/hr" "" ""
+"C-0.07-aliquot7" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "C-0.07-aliquot7" "JIC57_Carbon_0.07_External_3_1" "JIC57_Carbon_0.07_External_3_1.txt" "" "" "elemental carbon" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33415" "0.07" "l/hr" "" ""
+"C-0.1-aliquot5" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "C-0.1-aliquot5" "JIC58_Carbon_0.10_External_1_1" "JIC58_Carbon_0.10_External_1_1.txt" "" "" "elemental carbon" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33415" "0.1" "l/hr" "" ""
+"C-0.1-aliquot6" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "C-0.1-aliquot6" "JIC59_Carbon_0.10_External_2_1" "JIC59_Carbon_0.10_External_2_1.txt" "" "" "elemental carbon" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33415" "0.1" "l/hr" "" ""
+"C-0.1-aliquot7" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "C-0.1-aliquot7" "JIC60_Carbon_0.10_External_3_1" "JIC60_Carbon_0.10_External_3_1.txt" "" "" "elemental carbon" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33415" "0.1" "l/hr" "" ""
+"C-0.2-aliquot5" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "C-0.2-aliquot5" "JIC61_Carbon_0.20_External_1_1" "JIC61_Carbon_0.20_External_1_1.txt" "" "" "elemental carbon" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33415" "0.2" "l/hr" "" ""
+"C-0.2-aliquot6" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "C-0.2-aliquot6" "JIC62_Carbon_0.20_External_2_1" "JIC62_Carbon_0.20_External_2_1.txt" "" "" "elemental carbon" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33415" "0.2" "l/hr" "" ""
+"C-0.2-aliquot7" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "C-0.2-aliquot7" "JIC63_Carbon_0.20_External_3_1" "JIC63_Carbon_0.20_External_3_1.txt" "" "" "elemental carbon" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33415" "0.2" "l/hr" "" ""
+"G-0.07-aliquot1" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "G-0.07-aliquot1" "JIC100_GlucoseO2_0.07_External_1_1" "JIC100_GlucoseO2_0.07_External_1_1.txt" "" "" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.07" "l/hr" "" ""
+"G-0.07-aliquot1" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "G-0.07-aliquot1" "JIC100_GlucoseO2_0.07_External_1_2" "JIC100_GlucoseO2_0.07_External_1_2.txt" "" "" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.07" "l/hr" "" ""
+"G-0.07-aliquot2" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "G-0.07-aliquot2" "JIC101_GlucoseO2_0.07_External_2_1" "JIC101_GlucoseO2_0.07_External_2_1.txt" "" "" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.07" "l/hr" "" ""
+"G-0.07-aliquot3" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "G-0.07-aliquot3" "JIC102_GlucoseO2_0.07_External_3_1" "JIC102_GlucoseO2_0.07_External_3_1.txt" "" "" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.07" "l/hr" "" ""
+"G-0.1-aliquot1" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "G-0.1-aliquot1" "JIC103_GlucoseO2_0.10_External_1_1" "JIC103_GlucoseO2_0.10_External_1_1.txt" "" "" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.1" "l/hr" "" ""
+"G-0.1-aliquot2" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "G-0.1-aliquot2" "JIC104_GlucoseO2_0.10_External_2_1" "JIC104_GlucoseO2_0.10_External_2_1.txt" "" "" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.1" "l/hr" "" ""
+"G-0.1-aliquot3" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "G-0.1-aliquot3" "JIC105_GlucoseO2_0.10_External_3_1" "JIC105_GlucoseO2_0.10_External_3_1.txt" "" "" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.1" "l/hr" "" ""
+"G-0.2-aliquot1" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "G-0.2-aliquot1" "JIC106_GlucoseO2_0.20_External_1_1" "JIC106_GlucoseO2_0.20_External_1_1.txt" "" "" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.2" "l/hr" "" ""
+"G-0.2-aliquot2" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "G-0.2-aliquot2" "JIC107_GlucoseO2_0.20_External_2_1" "JIC107_GlucoseO2_0.20_External_2_1.txt" "" "" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.2" "l/hr" "" ""
+"G-0.2-aliquot3" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "G-0.2-aliquot3" "JIC108_GlucoseO2_0.20_External_3_1" "JIC108_GlucoseO2_0.20_External_3_1.txt" "" "" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.2" "l/hr" "" ""
+"E-0.07-aliquot4" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "E-0.07-aliquot4" "JIC91_Ethanol_0.07_External_1_1" "JIC91_Ethanol_0.07_External_1_1.txt" "" "" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.07" "l/hr" "" ""
+"E-0.07-aliquot4" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "E-0.07-aliquot4" "JIC91_Ethanol_0.07_External_1_2" "JIC91_Ethanol_0.07_External_1_2.txt" "" "" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.07" "l/hr" "" ""
+"E-0.07-aliquot4" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "E-0.07-aliquot4" "JIC91_Ethanol_0.07_External_1_3" "JIC91_Ethanol_0.07_External_1_3.txt" "" "" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.07" "l/hr" "" ""
+"E-0.07-aliquot5" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "E-0.07-aliquot5" "JIC92_Ethanol_0.07_External_2_1" "JIC92_Ethanol_0.07_External_2_1.txt" "" "" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.07" "l/hr" "" ""
+"E-0.07-aliquot6" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "E-0.07-aliquot6" "JIC93_Ethanol_0.07_External_3_1" "JIC93_Ethanol_0.07_External_3_1.txt" "" "" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.07" "l/hr" "" ""
+"E-0.1-aliquot4" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "E-0.1-aliquot4" "JIC94_Ethanol_0.10_External_1_1" "JIC94_Ethanol_0.10_External_1_1.txt" "" "" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.1" "l/hr" "" ""
+"E-0.1-aliquot5" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "E-0.1-aliquot5" "JIC95_Ethanol_0.10_External_2_1" "JIC95_Ethanol_0.10_External_2_1.txt" "" "" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.1" "l/hr" "" ""
+"E-0.1-aliquot6" "extracellular region part" "CL" "http://purl.obolibrary.org/obo/GO_0044421" "metabolite extraction" "20" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "1000" "microliter" "UO" "http://purl.obolibrary.org/obo/UO_0000101" "E-0.1-aliquot6" "JIC96_Ethanol_0.10_External_3_1" "JIC96_Ethanol_0.10_External_3_1.txt" "" "" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.1" "l/hr" "" ""
diff --git a/src/test/resources/test-data/BII-I-1/a_microarray.txt b/src/test/resources/test-data/BII-I-1/a_microarray.txt
index 0c0544e5..23a36f92 100644
--- a/src/test/resources/test-data/BII-I-1/a_microarray.txt
+++ b/src/test/resources/test-data/BII-I-1/a_microarray.txt
@@ -1,15 +1,15 @@
-Sample Name Protocol REF Extract Name Protocol REF Labeled Extract Name Label Protocol REF Hybridization Assay Name Comment[ArrayExpress Accession] Comment[ArrayExpress Raw Data URL] Comment[ArrayExpress Processed Data URL] Array Design REF Scan Name Array Data File Comment[Data Repository] Comment[Data Record Accession] Data Transformation Name Derived Array Data File Factor Value[dose] Unit Factor Value[exposure time] Unit Factor Value[compound]
-NZ_0hrs_Grow1_Sample_1 mRNA extraction NZ_0hrs_Sample_1_Extract biotin labeling NZ_0hrs_Sample_1_Labelled biotin EukGE-WS4 NZ_0hrs_Sample_1_Labelled_Hyb1 E-MEXP-115 E-MEXP-115 E-MEXP-115 A-AFFY-27 NZ_0hrs_Sample_1_Labelled_Hyb1_Scan1 E-MAXD-4-raw-data-426648549.txt data processing E-MAXD-4-processed-data-1342566476.txt 0 nanogram per milliliter 0 hour
-NZ_1hrs_Grow1_Drug_Sample_1 mRNA extraction NZ_1hrs_Drug_Sample_1_Extract biotin labeling NZ_1hrs_Drug_Sample_1_Labelled biotin EukGE-WS4 NZ_1hrs_Drug_Sample_1_Labelled_Hyb3 E-MEXP-115 E-MEXP-115 E-MEXP-115 A-AFFY-27 NZ_1hrs_Drug_Sample_1_Labelled_Hyb3_Scan3 E-MAXD-4-raw-data-426648567.txt data processing E-MAXD-4-processed-data-1342566476.txt 200 nanogram per milliliter 1 hour sirolimus
-NZ_2hrs_Grow1_Drug_Sample_1 mRNA extraction NZ_2hrs_Drug_Sample_1_Extract biotin labeling NZ_2hrs_Drug_Sample_1_Labelled biotin EukGE-WS4 NZ_2hrs_Drug_Sample_1_Labelled_Hyb7 E-MEXP-115 E-MEXP-115 E-MEXP-115 A-AFFY-27 NZ_2hrs_Drug_Sample_1_Labelled_Hyb7_Scan7 E-MAXD-4-raw-data-426648585.txt data processing E-MAXD-4-processed-data-1342566476.txt 200 nanogram per milliliter 2 hour sirolimus
-NZ_4hrs_Grow1_Drug_Sample_1 mRNA extraction NZ_4hrs_Drug_Sample_1_Extract biotin labeling NZ_4hrs_Drug_Sample_1_Labelled biotin EukGE-WS4 NZ_4hrs_Drug_Sample_1_Labelled_Hyb11 E-MEXP-115 E-MEXP-115 E-MEXP-115 A-AFFY-27 NZ_4hrs_Drug_Sample_1_Labelled_Hyb11_Scan11 E-MAXD-4-raw-data-426648603.txt data processing E-MAXD-4-processed-data-1342566476.txt 200 nanogram per milliliter 4 hour sirolimus
-NZ_2hrs_Grow1_Vehicle_Sample_1 mRNA extraction NZ_2hrs_Vehicle_Sample_1_Extract biotin labeling NZ_2hrs_Vehicle_Sample_1_Labelled biotin EukGE-WS4 NZ_2hrs_Vehicle_Sample_1_Labelled_Hyb9 E-MEXP-115 E-MEXP-115 E-MEXP-115 A-AFFY-27 NZ_2hrs_Vehicle_Sample_1_Labelled_Hyb9_Scan9 E-MAXD-4-raw-data-426648639.txt data processing E-MAXD-4-processed-data-1342566476.txt 0 nanogram per milliliter 2 hour drug vehicle (90% ethanol/10% tween-20)
-NZ_4hrs_Grow1_Vehicle_Sample_1 mRNA extraction NZ_4hrs_Vehicle_Sample_1_Extract biotin labeling NZ_4hrs_Vehicle_Sample_1_Labelled biotin EukGE-WS4 NZ_4hrs_Vehicle_Sample_1_Labelled_Hyb13 E-MEXP-115 E-MEXP-115 E-MEXP-115 A-AFFY-27 NZ_4hrs_Vehicle_Sample_1_Labelled_Hyb13_Scan13 E-MAXD-4-raw-data-426648657.txt data processing E-MAXD-4-processed-data-1342566476.txt 0 nanogram per milliliter 4 hour drug vehicle (90% ethanol/10% tween-20)
-NZ_1hrs_Grow1_Vehicle_Sample_1 mRNA extraction NZ_1hrs_Vehicle_Sample_1_Extract biotin labeling NZ_1hrs_Vehicle_Sample_1_Labelled biotin EukGE-WS4 NZ_1hrs_Vehicle_Sample_1_Labelled_Hyb5 E-MEXP-115 E-MEXP-115 E-MEXP-115 A-AFFY-27 NZ_1hrs_Vehicle_Sample_1_Labelled_Hyb5_Scan5 E-MAXD-4-raw-data-426648621.txt data processing E-MAXD-4-processed-data-1342566476.txt 0 nanogram per milliliter 1 hour drug vehicle (90% ethanol/10% tween-20)
-NZ_0hrs_Grow2_Sample_2 mRNA extraction NZ_0hrs_Sample_2_Extract biotin labeling NZ_0hrs_Sample_2_Labelled biotin EukGE-WS4 NZ_0hrs_Sample_2_Labelled_Hyb2 E-MEXP-115 E-MEXP-115 E-MEXP-115 A-AFFY-27 NZ_0hrs_Sample_2_Labelled_Hyb2_Scan2 E-MAXD-4-raw-data-426648675.txt data processing E-MAXD-4-processed-data-1342566476.txt 0 nanogram per milliliter 0 hour
-NZ_1hrs_Grow2_Drug_Sample_2 mRNA extraction NZ_1hrs_Drug_Sample_2_Extract biotin labeling NZ_1hrs_Drug_Sample_2_Labelled biotin EukGE-WS4 NZ_1hrs_Drug_Sample_2_Labelled_Hyb4 E-MEXP-115 E-MEXP-115 E-MEXP-115 A-AFFY-27 NZ_1hrs_Drug_Sample_2_Labelled_Hyb4_Scan4 E-MAXD-4-raw-data-426648693.txt data processing E-MAXD-4-processed-data-1342566476.txt 200 nanogram per milliliter 1 hour sirolimus
-NZ_4hrs_Grow2_Drug_Sample_2 mRNA extraction NZ_4hrs_Drug_Sample_2_Extract biotin labeling NZ_4hrs_Drug_Sample_2_Labelled biotin EukGE-WS4 NZ_4hrs_Drug_Sample_2_Labelled_Hyb12 E-MEXP-115 E-MEXP-115 E-MEXP-115 A-AFFY-27 NZ_4hrs_Drug_Sample_2_Labelled_Hyb12_Scan12 E-MAXD-4-raw-data-426648729.txt data processing E-MAXD-4-processed-data-1342566476.txt 200 nanogram per milliliter 4 hour sirolimus
-NZ_2hrs_Grow2_Drug_Sample_2 mRNA extraction NZ_2hrs_Drug_Sample_2_Extract biotin labeling NZ_2hrs_Drug_Sample_2_Labelled biotin EukGE-WS4 NZ_2hrs_Drug_Sample_2_Labelled_Hyb8 E-MEXP-115 E-MEXP-115 E-MEXP-115 A-AFFY-27 NZ_2hrs_Drug_Sample_2_Labelled_Hyb8_Scan8 E-MAXD-4-raw-data-426648711.txt data processing E-MAXD-4-processed-data-1342566476.txt 200 nanogram per milliliter 2 hour sirolimus
-NZ_1hrs_Grow2_Vehicle_Sample_2 mRNA extraction NZ_1hrs_Vehicle_Sample_2_Extract biotin labeling NZ_1hrs_Vehicle_Sample_2_Labelled biotin EukGE-WS4 NZ_1hrs_Vehicle_Sample_2_Labelled_Hyb6 E-MEXP-115 E-MEXP-115 E-MEXP-115 A-AFFY-27 NZ_1hrs_Vehicle_Sample_2_Labelled_Hyb6_Scan6 E-MAXD-4-raw-data-426648747.txt data processing E-MAXD-4-processed-data-1342566476.txt 0 nanogram per milliliter 1 hour drug vehicle (90% ethanol/10% tween-20)
-NZ_2hrs_Grow2_Vehicle_Sample_2 mRNA extraction NZ_2hrs_Vehicle_Sample_2_Extract biotin labeling NZ_2hrs_Vehicle_Sample_2_Labelled biotin EukGE-WS4 NZ_2hrs_Vehicle_Sample_2_Labelled_Hyb10 E-MEXP-115 E-MEXP-115 E-MEXP-115 A-AFFY-27 NZ_2hrs_Vehicle_Sample_2_Labelled_Hyb10_Scan10 E-MAXD-4-raw-data-426648765.txt data processing E-MAXD-4-processed-data-1342566476.txt 0 nanogram per milliliter 2 hour drug vehicle (90% ethanol/10% tween-20)
-NZ_4hrs_Grow2_Vehicle_Sample_2 mRNA extraction NZ_4hrs_Vehicle_Sample_2_Extract biotin labeling NZ_4hrs_Vehicle_Sample_2_Labelled biotin EukGE-WS4 NZ_4hrs_Vehicle_Sample_2_Labelled_Hyb14 E-MEXP-115 E-MEXP-115 E-MEXP-115 A-AFFY-27 NZ_4hrs_Vehicle_Sample_2_Labelled_Hyb14_Scan14 E-MAXD-4-raw-data-426648783.txt data processing E-MAXD-4-processed-data-1342566476.txt 0 nanogram per milliliter 4 hour drug vehicle (90% ethanol/10% tween-20)
+"Sample Name" "Protocol REF" "Extract Name" "Protocol REF" "Labeled Extract Name" "Label" "Term Source REF" "Term Accession Number" "Protocol REF" "Hybridization Assay Name" "Comment[ArrayExpress Accession]" "Comment[ArrayExpress Raw Data URL]" "Comment[ArrayExpress Processed Data URL]" "Array Design REF" "Scan Name" "Array Data File" "Comment[Data Repository]" "Comment[Data Record Accession]" "Data Transformation Name" "Derived Array Data File" "Factor Value[dose]" "Unit" "Term Source REF" "Term Accession Number" "Factor Value[exposure time]" "Unit" "Term Source REF" "Term Accession Number" "Factor Value[compound]" "Term Source REF" "Term Accession Number"
+"NZ_0hrs_Grow1_Sample_1" "mRNA extraction" "NZ_0hrs_Sample_1_Extract" "biotin labeling" "NZ_0hrs_Sample_1_Labelled" "biotin" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_15956" "EukGE-WS4" "NZ_0hrs_Sample_1_Labelled_Hyb1" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "NZ_0hrs_Sample_1_Labelled_Hyb1_Scan1" "E-MAXD-4-raw-data-426648549.txt" "" "" "data processing" "E-MAXD-4-processed-data-1342566476.txt" "0" "nanogram per milliliter" "UO" "http://purl.obolibrary.org/obo/UO_0000275" "0" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032" "" "" ""
+"NZ_1hrs_Grow1_Drug_Sample_1" "mRNA extraction" "NZ_1hrs_Drug_Sample_1_Extract" "biotin labeling" "NZ_1hrs_Drug_Sample_1_Labelled" "biotin" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_15956" "EukGE-WS4" "NZ_1hrs_Drug_Sample_1_Labelled_Hyb3" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "NZ_1hrs_Drug_Sample_1_Labelled_Hyb3_Scan3" "E-MAXD-4-raw-data-426648567.txt" "" "" "data processing" "E-MAXD-4-processed-data-1342566476.txt" "200" "nanogram per milliliter" "UO" "http://purl.obolibrary.org/obo/UO_0000275" "1" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032" "sirolimus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_9168"
+"NZ_2hrs_Grow1_Drug_Sample_1" "mRNA extraction" "NZ_2hrs_Drug_Sample_1_Extract" "biotin labeling" "NZ_2hrs_Drug_Sample_1_Labelled" "biotin" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_15956" "EukGE-WS4" "NZ_2hrs_Drug_Sample_1_Labelled_Hyb7" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "NZ_2hrs_Drug_Sample_1_Labelled_Hyb7_Scan7" "E-MAXD-4-raw-data-426648585.txt" "" "" "data processing" "E-MAXD-4-processed-data-1342566476.txt" "200" "nanogram per milliliter" "UO" "http://purl.obolibrary.org/obo/UO_0000275" "2" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032" "sirolimus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_9168"
+"NZ_4hrs_Grow1_Drug_Sample_1" "mRNA extraction" "NZ_4hrs_Drug_Sample_1_Extract" "biotin labeling" "NZ_4hrs_Drug_Sample_1_Labelled" "biotin" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_15956" "EukGE-WS4" "NZ_4hrs_Drug_Sample_1_Labelled_Hyb11" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "NZ_4hrs_Drug_Sample_1_Labelled_Hyb11_Scan11" "E-MAXD-4-raw-data-426648603.txt" "" "" "data processing" "E-MAXD-4-processed-data-1342566476.txt" "200" "nanogram per milliliter" "UO" "http://purl.obolibrary.org/obo/UO_0000275" "4" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032" "sirolimus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_9168"
+"NZ_2hrs_Grow1_Vehicle_Sample_1" "mRNA extraction" "NZ_2hrs_Vehicle_Sample_1_Extract" "biotin labeling" "NZ_2hrs_Vehicle_Sample_1_Labelled" "biotin" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_15956" "EukGE-WS4" "NZ_2hrs_Vehicle_Sample_1_Labelled_Hyb9" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "NZ_2hrs_Vehicle_Sample_1_Labelled_Hyb9_Scan9" "E-MAXD-4-raw-data-426648639.txt" "" "" "data processing" "E-MAXD-4-processed-data-1342566476.txt" "0" "nanogram per milliliter" "UO" "http://purl.obolibrary.org/obo/UO_0000275" "2" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032" "drug vehicle (90% ethanol/10% tween-20)" "" ""
+"NZ_4hrs_Grow1_Vehicle_Sample_1" "mRNA extraction" "NZ_4hrs_Vehicle_Sample_1_Extract" "biotin labeling" "NZ_4hrs_Vehicle_Sample_1_Labelled" "biotin" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_15956" "EukGE-WS4" "NZ_4hrs_Vehicle_Sample_1_Labelled_Hyb13" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "NZ_4hrs_Vehicle_Sample_1_Labelled_Hyb13_Scan13" "E-MAXD-4-raw-data-426648657.txt" "" "" "data processing" "E-MAXD-4-processed-data-1342566476.txt" "0" "nanogram per milliliter" "UO" "http://purl.obolibrary.org/obo/UO_0000275" "4" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032" "drug vehicle (90% ethanol/10% tween-20)" "" ""
+"NZ_1hrs_Grow1_Vehicle_Sample_1" "mRNA extraction" "NZ_1hrs_Vehicle_Sample_1_Extract" "biotin labeling" "NZ_1hrs_Vehicle_Sample_1_Labelled" "biotin" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_15956" "EukGE-WS4" "NZ_1hrs_Vehicle_Sample_1_Labelled_Hyb5" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "NZ_1hrs_Vehicle_Sample_1_Labelled_Hyb5_Scan5" "E-MAXD-4-raw-data-426648621.txt" "" "" "data processing" "E-MAXD-4-processed-data-1342566476.txt" "0" "nanogram per milliliter" "UO" "http://purl.obolibrary.org/obo/UO_0000275" "1" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032" "drug vehicle (90% ethanol/10% tween-20)" "" ""
+"NZ_0hrs_Grow2_Sample_2" "mRNA extraction" "NZ_0hrs_Sample_2_Extract" "biotin labeling" "NZ_0hrs_Sample_2_Labelled" "biotin" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_15956" "EukGE-WS4" "NZ_0hrs_Sample_2_Labelled_Hyb2" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "NZ_0hrs_Sample_2_Labelled_Hyb2_Scan2" "E-MAXD-4-raw-data-426648675.txt" "" "" "data processing" "E-MAXD-4-processed-data-1342566476.txt" "0" "nanogram per milliliter" "UO" "http://purl.obolibrary.org/obo/UO_0000275" "0" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032" "" "" ""
+"NZ_1hrs_Grow2_Drug_Sample_2" "mRNA extraction" "NZ_1hrs_Drug_Sample_2_Extract" "biotin labeling" "NZ_1hrs_Drug_Sample_2_Labelled" "biotin" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_15956" "EukGE-WS4" "NZ_1hrs_Drug_Sample_2_Labelled_Hyb4" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "NZ_1hrs_Drug_Sample_2_Labelled_Hyb4_Scan4" "E-MAXD-4-raw-data-426648693.txt" "" "" "data processing" "E-MAXD-4-processed-data-1342566476.txt" "200" "nanogram per milliliter" "UO" "http://purl.obolibrary.org/obo/UO_0000275" "1" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032" "sirolimus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_9168"
+"NZ_4hrs_Grow2_Drug_Sample_2" "mRNA extraction" "NZ_4hrs_Drug_Sample_2_Extract" "biotin labeling" "NZ_4hrs_Drug_Sample_2_Labelled" "biotin" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_15956" "EukGE-WS4" "NZ_4hrs_Drug_Sample_2_Labelled_Hyb12" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "NZ_4hrs_Drug_Sample_2_Labelled_Hyb12_Scan12" "E-MAXD-4-raw-data-426648729.txt" "" "" "data processing" "E-MAXD-4-processed-data-1342566476.txt" "200" "nanogram per milliliter" "UO" "http://purl.obolibrary.org/obo/UO_0000275" "4" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032" "sirolimus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_9168"
+"NZ_2hrs_Grow2_Drug_Sample_2" "mRNA extraction" "NZ_2hrs_Drug_Sample_2_Extract" "biotin labeling" "NZ_2hrs_Drug_Sample_2_Labelled" "biotin" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_15956" "EukGE-WS4" "NZ_2hrs_Drug_Sample_2_Labelled_Hyb8" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "NZ_2hrs_Drug_Sample_2_Labelled_Hyb8_Scan8" "E-MAXD-4-raw-data-426648711.txt" "" "" "data processing" "E-MAXD-4-processed-data-1342566476.txt" "200" "nanogram per milliliter" "UO" "http://purl.obolibrary.org/obo/UO_0000275" "2" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032" "sirolimus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_9168"
+"NZ_1hrs_Grow2_Vehicle_Sample_2" "mRNA extraction" "NZ_1hrs_Vehicle_Sample_2_Extract" "biotin labeling" "NZ_1hrs_Vehicle_Sample_2_Labelled" "biotin" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_15956" "EukGE-WS4" "NZ_1hrs_Vehicle_Sample_2_Labelled_Hyb6" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "NZ_1hrs_Vehicle_Sample_2_Labelled_Hyb6_Scan6" "E-MAXD-4-raw-data-426648747.txt" "" "" "data processing" "E-MAXD-4-processed-data-1342566476.txt" "0" "nanogram per milliliter" "UO" "http://purl.obolibrary.org/obo/UO_0000275" "1" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032" "drug vehicle (90% ethanol/10% tween-20)" "" ""
+"NZ_2hrs_Grow2_Vehicle_Sample_2" "mRNA extraction" "NZ_2hrs_Vehicle_Sample_2_Extract" "biotin labeling" "NZ_2hrs_Vehicle_Sample_2_Labelled" "biotin" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_15956" "EukGE-WS4" "NZ_2hrs_Vehicle_Sample_2_Labelled_Hyb10" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "NZ_2hrs_Vehicle_Sample_2_Labelled_Hyb10_Scan10" "E-MAXD-4-raw-data-426648765.txt" "" "" "data processing" "E-MAXD-4-processed-data-1342566476.txt" "0" "nanogram per milliliter" "UO" "http://purl.obolibrary.org/obo/UO_0000275" "2" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032" "drug vehicle (90% ethanol/10% tween-20)" "" ""
+"NZ_4hrs_Grow2_Vehicle_Sample_2" "mRNA extraction" "NZ_4hrs_Vehicle_Sample_2_Extract" "biotin labeling" "NZ_4hrs_Vehicle_Sample_2_Labelled" "biotin" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_15956" "EukGE-WS4" "NZ_4hrs_Vehicle_Sample_2_Labelled_Hyb14" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "NZ_4hrs_Vehicle_Sample_2_Labelled_Hyb14_Scan14" "E-MAXD-4-raw-data-426648783.txt" "" "" "data processing" "E-MAXD-4-processed-data-1342566476.txt" "0" "nanogram per milliliter" "UO" "http://purl.obolibrary.org/obo/UO_0000275" "4" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032" "drug vehicle (90% ethanol/10% tween-20)" "" ""
diff --git a/src/test/resources/test-data/BII-I-1/a_proteome.txt b/src/test/resources/test-data/BII-I-1/a_proteome.txt
index 25f7b9dc..a6894d46 100644
--- a/src/test/resources/test-data/BII-I-1/a_proteome.txt
+++ b/src/test/resources/test-data/BII-I-1/a_proteome.txt
@@ -1,19 +1,19 @@
-Sample Name Protocol REF Extract Name Protocol REF Labeled Extract Name Label MS Assay Name Comment[PRIDE Accession] Comment[PRIDE Processed Data Accession] Raw Spectral Data File Comment[Data Record Accession] Comment[Data Repository] Normalization Name Protein Assignment File Peptide Assignment File Post Translational Modification Assignment File Data Transformation Name Derived Spectral Data File Factor Value[limiting nutrient] Factor Value[rate] Unit
-S-0.1-aliquot11 protein extraction S-0.1 ITRAQ labeling JC_S-0.1 iTRAQ reagent 117 8761 8761 8761 spectrum.mzdata norm1 proteins.csv peptides.csv ptms.csv datatransformation1 PRIDE_Exp_Complete_Ac_8761.xml elemental sulfur 0.1 l/hr
-C-0.1-aliquot11 protein extraction C-0.1 ITRAQ labeling JC_C-0.1 iTRAQ reagent 116 8761 8761 8761 spectrum.mzdata norm1 proteins.csv peptides.csv ptms.csv datatransformation1 PRIDE_Exp_Complete_Ac_8761.xml elemental carbon 0.1 l/hr
-N-0.1-aliquot11 protein extraction N-0.1 ITRAQ labeling JC_N-0.1 iTRAQ reagent 115 8761 8761 8761 spectrum.mzdata norm1 proteins.csv peptides.csv ptms.csv datatransformation1 PRIDE_Exp_Complete_Ac_8761.xml elemental nitrogen 0.1 l/hr
-S-0.1-aliquot11 protein extraction S-0.1 ITRAQ labeling Pool1 iTRAQ reagent 114 8761 8761 8761 spectrum.mzdata norm1 proteins.csv peptides.csv ptms.csv datatransformation1 PRIDE_Exp_Complete_Ac_8761.xml l/hr
-C-0.1-aliquot11 protein extraction C-0.1 ITRAQ labeling Pool1 iTRAQ reagent 114 8761 8761 8761 spectrum.mzdata norm1 proteins.csv peptides.csv ptms.csv datatransformation1 PRIDE_Exp_Complete_Ac_8761.xml l/hr
-N-0.1-aliquot11 protein extraction N-0.1 ITRAQ labeling Pool1 iTRAQ reagent 114 8761 8761 8761 spectrum.mzdata norm1 proteins.csv peptides.csv ptms.csv datatransformation1 PRIDE_Exp_Complete_Ac_8761.xml l/hr
-C-0.2-aliquot11 protein extraction C-0.2 ITRAQ labeling JC_C-0.2 iTRAQ reagent 117 8762 8762 8762 spectrum.mzdata norm2 proteins.csv peptides.csv ptms.csv datatransformation2 PRIDE_Exp_Complete_Ac_8762.xml elemental carbon 0.2 l/hr
-N-0.2-aliquot11 protein extraction N-0.2 ITRAQ labeling JC_N-0.2 iTRAQ reagent 116 8762 8762 8762 spectrum.mzdata norm2 proteins.csv peptides.csv ptms.csv datatransformation2 PRIDE_Exp_Complete_Ac_8762.xml elemental nitrogen 0.2 l/hr
-P-0.1-aliquot11 protein extraction P-0.1 ITRAQ labeling JC_P-0.1 iTRAQ reagent 115 8762 8762 8762 spectrum.mzdata norm2 proteins.csv peptides.csv ptms.csv datatransformation2 PRIDE_Exp_Complete_Ac_8762.xml elemental phosphorus 0.1 l/hr
-C-0.2-aliquot11 protein extraction C-0.2 ITRAQ labeling Pool2 iTRAQ reagent 114 8762 8762 8762 spectrum.mzdata norm2 proteins.csv peptides.csv ptms.csv datatransformation2 PRIDE_Exp_Complete_Ac_8762.xml l/hr
-N-0.2-aliquot11 protein extraction N-0.2 ITRAQ labeling Pool2 iTRAQ reagent 114 8762 8762 8762 spectrum.mzdata norm2 proteins.csv peptides.csv ptms.csv datatransformation2 PRIDE_Exp_Complete_Ac_8762.xml l/hr
-P-0.1-aliquot11 protein extraction P-0.1 ITRAQ labeling Pool2 iTRAQ reagent 114 8762 8762 8762 spectrum.mzdata norm2 proteins.csv peptides.csv ptms.csv datatransformation2 PRIDE_Exp_Complete_Ac_8762.xml l/hr
-P-0.2-aliquot11 protein extraction P-0.2 ITRAQ labeling JC_P-0.2 iTRAQ reagent 116 8763 8763 8763 spectrum.mzdata norm3 proteins.csv peptides.csv ptms.csv datatransformation3 PRIDE_Exp_Complete_Ac_8763.xml elemental phosphorus 0.2 l/hr
-S-0.2-aliquot11 protein extraction S-0.2 ITRAQ labeling JC_S-0.2 iTRAQ reagent 115 8763 8763 8763 spectrum.mzdata norm3 proteins.csv peptides.csv ptms.csv datatransformation3 PRIDE_Exp_Complete_Ac_8763.xml elemental sulfur 0.2 l/hr
-P-0.2-aliquot11 protein extraction P-0.2 ITRAQ labeling Pool3 iTRAQ reagent 117 8763 8763 8763 spectrum.mzdata norm3 proteins.csv peptides.csv ptms.csv datatransformation3 PRIDE_Exp_Complete_Ac_8763.xml l/hr
-S-0.2-aliquot11 protein extraction S-0.2 ITRAQ labeling Pool3 iTRAQ reagent 117 8763 8763 8763 spectrum.mzdata norm3 proteins.csv peptides.csv ptms.csv datatransformation3 PRIDE_Exp_Complete_Ac_8763.xml l/hr
-P-0.2-aliquot11 protein extraction P-0.2 ITRAQ labeling Pool3 iTRAQ reagent 114 8763 8763 8763 spectrum.mzdata norm3 proteins.csv peptides.csv ptms.csv datatransformation3 PRIDE_Exp_Complete_Ac_8763.xml l/hr
-S-0.2-aliquot11 protein extraction S-0.2 ITRAQ labeling Pool3 iTRAQ reagent 114 8763 8763 8763 spectrum.mzdata norm3 proteins.csv peptides.csv ptms.csv datatransformation3 PRIDE_Exp_Complete_Ac_8763.xml l/hr
+"Sample Name" "Protocol REF" "Extract Name" "Protocol REF" "Labeled Extract Name" "Label" "Term Source REF" "Term Accession Number" "MS Assay Name" "Comment[PRIDE Accession]" "Comment[PRIDE Processed Data Accession]" "Raw Spectral Data File" "Comment[Data Record Accession]" "Comment[Data Repository]" "Normalization Name" "Protein Assignment File" "Peptide Assignment File" "Post Translational Modification Assignment File" "Data Transformation Name" "Derived Spectral Data File" "Factor Value[limiting nutrient]" "Term Source REF" "Term Accession Number" "Factor Value[rate]" "Unit" "Term Source REF" "Term Accession Number"
+"S-0.1-aliquot11" "protein extraction" "S-0.1" "ITRAQ labeling" "JC_S-0.1" "iTRAQ reagent 117" "" "" "8761" "8761" "8761" "spectrum.mzdata" "" "" "norm1" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation1" "PRIDE_Exp_Complete_Ac_8761.xml" "elemental sulfur" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33403" "0.1" "l/hr" "" ""
+"C-0.1-aliquot11" "protein extraction" "C-0.1" "ITRAQ labeling" "JC_C-0.1" "iTRAQ reagent 116" "" "" "8761" "8761" "8761" "spectrum.mzdata" "" "" "norm1" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation1" "PRIDE_Exp_Complete_Ac_8761.xml" "elemental carbon" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33415" "0.1" "l/hr" "" ""
+"N-0.1-aliquot11" "protein extraction" "N-0.1" "ITRAQ labeling" "JC_N-0.1" "iTRAQ reagent 115" "" "" "8761" "8761" "8761" "spectrum.mzdata" "" "" "norm1" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation1" "PRIDE_Exp_Complete_Ac_8761.xml" "elemental nitrogen" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33267" "0.1" "l/hr" "" ""
+"S-0.1-aliquot11" "protein extraction" "S-0.1" "ITRAQ labeling" "Pool1" "iTRAQ reagent 114" "" "" "8761" "8761" "8761" "spectrum.mzdata" "" "" "norm1" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation1" "PRIDE_Exp_Complete_Ac_8761.xml" "" "" "" "" "l/hr" "" ""
+"C-0.1-aliquot11" "protein extraction" "C-0.1" "ITRAQ labeling" "Pool1" "iTRAQ reagent 114" "" "" "8761" "8761" "8761" "spectrum.mzdata" "" "" "norm1" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation1" "PRIDE_Exp_Complete_Ac_8761.xml" "" "" "" "" "l/hr" "" ""
+"N-0.1-aliquot11" "protein extraction" "N-0.1" "ITRAQ labeling" "Pool1" "iTRAQ reagent 114" "" "" "8761" "8761" "8761" "spectrum.mzdata" "" "" "norm1" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation1" "PRIDE_Exp_Complete_Ac_8761.xml" "" "" "" "" "l/hr" "" ""
+"C-0.2-aliquot11" "protein extraction" "C-0.2" "ITRAQ labeling" "JC_C-0.2" "iTRAQ reagent 117" "" "" "8762" "8762" "8762" "spectrum.mzdata" "" "" "norm2" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation2" "PRIDE_Exp_Complete_Ac_8762.xml" "elemental carbon" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33415" "0.2" "l/hr" "" ""
+"N-0.2-aliquot11" "protein extraction" "N-0.2" "ITRAQ labeling" "JC_N-0.2" "iTRAQ reagent 116" "" "" "8762" "8762" "8762" "spectrum.mzdata" "" "" "norm2" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation2" "PRIDE_Exp_Complete_Ac_8762.xml" "elemental nitrogen" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33267" "0.2" "l/hr" "" ""
+"P-0.1-aliquot11" "protein extraction" "P-0.1" "ITRAQ labeling" "JC_P-0.1" "iTRAQ reagent 115" "" "" "8762" "8762" "8762" "spectrum.mzdata" "" "" "norm2" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation2" "PRIDE_Exp_Complete_Ac_8762.xml" "elemental phosphorus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33464" "0.1" "l/hr" "" ""
+"C-0.2-aliquot11" "protein extraction" "C-0.2" "ITRAQ labeling" "Pool2" "iTRAQ reagent 114" "" "" "8762" "8762" "8762" "spectrum.mzdata" "" "" "norm2" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation2" "PRIDE_Exp_Complete_Ac_8762.xml" "" "" "" "" "l/hr" "" ""
+"N-0.2-aliquot11" "protein extraction" "N-0.2" "ITRAQ labeling" "Pool2" "iTRAQ reagent 114" "" "" "8762" "8762" "8762" "spectrum.mzdata" "" "" "norm2" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation2" "PRIDE_Exp_Complete_Ac_8762.xml" "" "" "" "" "l/hr" "" ""
+"P-0.1-aliquot11" "protein extraction" "P-0.1" "ITRAQ labeling" "Pool2" "iTRAQ reagent 114" "" "" "8762" "8762" "8762" "spectrum.mzdata" "" "" "norm2" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation2" "PRIDE_Exp_Complete_Ac_8762.xml" "" "" "" "" "l/hr" "" ""
+"P-0.2-aliquot11" "protein extraction" "P-0.2" "ITRAQ labeling" "JC_P-0.2" "iTRAQ reagent 116" "" "" "8763" "8763" "8763" "spectrum.mzdata" "" "" "norm3" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation3" "PRIDE_Exp_Complete_Ac_8763.xml" "elemental phosphorus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33464" "0.2" "l/hr" "" ""
+"S-0.2-aliquot11" "protein extraction" "S-0.2" "ITRAQ labeling" "JC_S-0.2" "iTRAQ reagent 115" "" "" "8763" "8763" "8763" "spectrum.mzdata" "" "" "norm3" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation3" "PRIDE_Exp_Complete_Ac_8763.xml" "elemental sulfur" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33403" "0.2" "l/hr" "" ""
+"P-0.2-aliquot11" "protein extraction" "P-0.2" "ITRAQ labeling" "Pool3" "iTRAQ reagent 117" "" "" "8763" "8763" "8763" "spectrum.mzdata" "" "" "norm3" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation3" "PRIDE_Exp_Complete_Ac_8763.xml" "" "" "" "" "l/hr" "" ""
+"S-0.2-aliquot11" "protein extraction" "S-0.2" "ITRAQ labeling" "Pool3" "iTRAQ reagent 117" "" "" "8763" "8763" "8763" "spectrum.mzdata" "" "" "norm3" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation3" "PRIDE_Exp_Complete_Ac_8763.xml" "" "" "" "" "l/hr" "" ""
+"P-0.2-aliquot11" "protein extraction" "P-0.2" "ITRAQ labeling" "Pool3" "iTRAQ reagent 114" "" "" "8763" "8763" "8763" "spectrum.mzdata" "" "" "norm3" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation3" "PRIDE_Exp_Complete_Ac_8763.xml" "" "" "" "" "l/hr" "" ""
+"S-0.2-aliquot11" "protein extraction" "S-0.2" "ITRAQ labeling" "Pool3" "iTRAQ reagent 114" "" "" "8763" "8763" "8763" "spectrum.mzdata" "" "" "norm3" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation3" "PRIDE_Exp_Complete_Ac_8763.xml" "" "" "" "" "l/hr" "" ""
diff --git a/src/test/resources/test-data/BII-I-1/a_transcriptome.txt b/src/test/resources/test-data/BII-I-1/a_transcriptome.txt
index 3618d9c5..4602ae12 100644
--- a/src/test/resources/test-data/BII-I-1/a_transcriptome.txt
+++ b/src/test/resources/test-data/BII-I-1/a_transcriptome.txt
@@ -1,49 +1,49 @@
-Sample Name Protocol REF Extract Name Protocol REF Labeled Extract Name Label Protocol REF Hybridization Assay Name Array Design REF Scan Name Array Data File Comment[Data Repository] Comment[Data Record Accession] Normalization Name Derived Array Data File Comment[Data Record Accession] Comment[Data Repository] Factor Value[limiting nutrient] Factor Value[rate] Unit
-C-0.07-aliquot1 mRNA extraction C-0.07-aliquot1 biotin labeling C-0.07-aliquot1 biotin EukGE-WS4 HYB:MEXP:3908 A-AFFY-27 SCAN:MEXP:3908 E-MEXP-115-raw-data-331217737.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental carbon 0.07 l/hr
-C-0.07-aliquot2 mRNA extraction C-0.07-aliquot2 biotin labeling C-0.07-aliquot2 biotin EukGE-WS4 HYB:MEXP:3909 A-AFFY-27 SCAN:MEXP:3909 E-MEXP-115-raw-data-331217860.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental carbon 0.07 l/hr
-C-0.07-aliquot3 mRNA extraction C-0.07-aliquot3 biotin labeling C-0.07-aliquot3 biotin EukGE-WS4 HYB:MEXP:3910 A-AFFY-27 SCAN:MEXP:3910 E-MEXP-115-raw-data-331217979.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental carbon 0.07 l/hr
-C-0.07-aliquot4 mRNA extraction C-0.07-aliquot4 biotin labeling C-0.07-aliquot4 biotin EukGE-WS4 HYB:MEXP:3907 A-AFFY-27 SCAN:MEXP:3907 E-MEXP-115-raw-data-331217580.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental carbon 0.07 l/hr
-C-0.1-aliquot1 mRNA extraction C-0.1-aliquot1 biotin labeling C-0.1-aliquot1 biotin EukGE-WS4 HYB:MEXP:3912 A-AFFY-27 SCAN:MEXP:3912 E-MEXP-115-raw-data-331218271.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental carbon 0.1 l/hr
-C-0.1-aliquot2 mRNA extraction C-0.1-aliquot2 biotin labeling C-0.1-aliquot2 biotin EukGE-WS4 HYB:MEXP:3913 A-AFFY-27 SCAN:MEXP:3913 E-MEXP-115-raw-data-331218449.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental carbon 0.1 l/hr
-C-0.1-aliquot3 mRNA extraction C-0.1-aliquot3 biotin labeling C-0.1-aliquot3 biotin EukGE-WS4 HYB:MEXP:3914 A-AFFY-27 SCAN:MEXP:3914 E-MEXP-115-raw-data-331218681.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental carbon 0.1 l/hr
-C-0.1-aliquot4 mRNA extraction C-0.1-aliquot4 biotin labeling C-0.1-aliquot4 biotin EukGE-WS4 HYB:MEXP:3911 A-AFFY-27 SCAN:MEXP:3911 E-MEXP-115-raw-data-331218116.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental carbon 0.1 l/hr
-C-0.2-aliquot1 mRNA extraction C-0.2-aliquot1 biotin labeling C-0.2-aliquot1 biotin EukGE-WS4 HYB:MEXP:3916 A-AFFY-27 SCAN:MEXP:3916 E-MEXP-115-raw-data-331219013.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental carbon 0.2 l/hr
-C-0.2-aliquot2 mRNA extraction C-0.2-aliquot2 biotin labeling C-0.2-aliquot2 biotin EukGE-WS4 HYB:MEXP:3915 A-AFFY-27 SCAN:MEXP:3915 E-MEXP-115-raw-data-331218842.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental carbon 0.2 l/hr
-C-0.2-aliquot3 mRNA extraction C-0.2-aliquot3 biotin labeling C-0.2-aliquot3 biotin EukGE-WS4 HYB:MEXP:3918 A-AFFY-27 SCAN:MEXP:3918 E-MEXP-115-raw-data-331219245.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental carbon 0.2 l/hr
-C-0.2-aliquot4 mRNA extraction C-0.2-aliquot4 biotin labeling C-0.2-aliquot4 biotin EukGE-WS4 HYB:MEXP:3917 A-AFFY-27 SCAN:MEXP:3917 E-MEXP-115-raw-data-331219131.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental carbon 0.2 l/hr
-N-0.07-aliquot1 mRNA extraction N-0.07-aliquot1 biotin labeling N-0.07-aliquot1 biotin EukGE-WS4 HYB:MEXP:3919 A-AFFY-27 SCAN:MEXP:3919 E-MEXP-115-raw-data-331219361.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental nitrogen 0.07 l/hr
-N-0.07-aliquot2 mRNA extraction N-0.07-aliquot2 biotin labeling N-0.07-aliquot2 biotin EukGE-WS4 HYB:MEXP:3921 A-AFFY-27 SCAN:MEXP:3921 E-MEXP-115-raw-data-331219634.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental nitrogen 0.07 l/hr
-N-0.07-aliquot3 mRNA extraction N-0.07-aliquot3 biotin labeling N-0.07-aliquot3 biotin EukGE-WS4 HYB:MEXP:3922 A-AFFY-27 SCAN:MEXP:3922 E-MEXP-115-raw-data-331219767.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental nitrogen 0.07 l/hr
-N-0.07-aliquot4 mRNA extraction N-0.07-aliquot4 biotin labeling N-0.07-aliquot4 biotin EukGE-WS4 HYB:MEXP:3920 A-AFFY-27 SCAN:MEXP:3920 E-MEXP-115-raw-data-331219490.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental nitrogen 0.07 l/hr
-N-0.1-aliquot1 mRNA extraction N-0.1-aliquot1 biotin labeling N-0.1-aliquot1 biotin EukGE-WS4 HYB:MEXP:3926 A-AFFY-27 SCAN:MEXP:3926 E-MEXP-115-raw-data-331220431.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental nitrogen 0.1 l/hr
-N-0.1-aliquot2 mRNA extraction N-0.1-aliquot2 biotin labeling N-0.1-aliquot2 biotin EukGE-WS4 HYB:MEXP:3923 A-AFFY-27 SCAN:MEXP:3923 E-MEXP-115-raw-data-331219914.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental nitrogen 0.1 l/hr
-N-0.1-aliquot3 mRNA extraction N-0.1-aliquot3 biotin labeling N-0.1-aliquot3 biotin EukGE-WS4 HYB:MEXP:3925 A-AFFY-27 SCAN:MEXP:3925 E-MEXP-115-raw-data-331220272.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental nitrogen 0.1 l/hr
-N-0.1-aliquot4 mRNA extraction N-0.1-aliquot4 biotin labeling N-0.1-aliquot4 biotin EukGE-WS4 HYB:MEXP:3924 A-AFFY-27 SCAN:MEXP:3924 E-MEXP-115-raw-data-331220090.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental nitrogen 0.1 l/hr
-N-0.2-aliquot1 mRNA extraction N-0.2-aliquot1 biotin labeling N-0.2-aliquot1 biotin EukGE-WS4 HYB:MEXP:3930 A-AFFY-27 SCAN:MEXP:3930 E-MEXP-115-raw-data-331221148.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental nitrogen 0.2 l/hr
-N-0.2-aliquot2 mRNA extraction N-0.2-aliquot2 biotin labeling N-0.2-aliquot2 biotin EukGE-WS4 HYB:MEXP:3929 A-AFFY-27 SCAN:MEXP:3929 E-MEXP-115-raw-data-331220982.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental nitrogen 0.2 l/hr
-N-0.2-aliquot3 mRNA extraction N-0.2-aliquot3 biotin labeling N-0.2-aliquot3 biotin EukGE-WS4 HYB:MEXP:3928 A-AFFY-27 SCAN:MEXP:3928 E-MEXP-115-raw-data-331220784.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental nitrogen 0.2 l/hr
-N-0.2-aliquot4 mRNA extraction N-0.2-aliquot4 biotin labeling N-0.2-aliquot4 biotin EukGE-WS4 HYB:MEXP:3927 A-AFFY-27 SCAN:MEXP:3927 E-MEXP-115-raw-data-331220607.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental nitrogen 0.2 l/hr
-P-0.07-aliquot1 mRNA extraction P-0.07-aliquot1 biotin labeling P-0.07-aliquot1 biotin EukGE-WS4 HYB:MEXP:3932 A-AFFY-27 SCAN:MEXP:3932 E-MEXP-115-raw-data-331221518.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental phosphorus 0.07 l/hr
-P-0.07-aliquot2 mRNA extraction P-0.07-aliquot2 biotin labeling P-0.07-aliquot2 biotin EukGE-WS4 HYB:MEXP:3934 A-AFFY-27 SCAN:MEXP:3934 E-MEXP-115-raw-data-331221873.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental phosphorus 0.07 l/hr
-P-0.07-aliquot3 mRNA extraction P-0.07-aliquot3 biotin labeling P-0.07-aliquot3 biotin EukGE-WS4 HYB:MEXP:3931 A-AFFY-27 SCAN:MEXP:3931 E-MEXP-115-raw-data-331221345.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental phosphorus 0.07 l/hr
-P-0.07-aliquot4 mRNA extraction P-0.07-aliquot4 biotin labeling P-0.07-aliquot4 biotin EukGE-WS4 HYB:MEXP:3933 A-AFFY-27 SCAN:MEXP:3933 E-MEXP-115-raw-data-331221668.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental phosphorus 0.07 l/hr
-P-0.1-aliquot1 mRNA extraction P-0.1-aliquot1 biotin labeling P-0.1-aliquot1 biotin EukGE-WS4 HYB:MEXP:3938 A-AFFY-27 SCAN:MEXP:3938 E-MEXP-115-raw-data-331222534.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental phosphorus 0.1 l/hr
-P-0.1-aliquot2 mRNA extraction P-0.1-aliquot2 biotin labeling P-0.1-aliquot2 biotin EukGE-WS4 HYB:MEXP:3935 A-AFFY-27 SCAN:MEXP:3935 E-MEXP-115-raw-data-331222054.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental phosphorus 0.1 l/hr
-P-0.1-aliquot3 mRNA extraction P-0.1-aliquot3 biotin labeling P-0.1-aliquot3 biotin EukGE-WS4 HYB:MEXP:3937 A-AFFY-27 SCAN:MEXP:3937 E-MEXP-115-raw-data-331222380.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental phosphorus 0.1 l/hr
-P-0.1-aliquot4 mRNA extraction P-0.1-aliquot4 biotin labeling P-0.1-aliquot4 biotin EukGE-WS4 HYB:MEXP:3936 A-AFFY-27 SCAN:MEXP:3936 E-MEXP-115-raw-data-331222215.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental phosphorus 0.1 l/hr
-P-0.2-aliquot1 mRNA extraction P-0.2-aliquot1 biotin labeling P-0.2-aliquot1 biotin EukGE-WS4 HYB:MEXP:3940 A-AFFY-27 SCAN:MEXP:3940 E-MEXP-115-raw-data-331222917.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental phosphorus 0.2 l/hr
-P-0.2-aliquot2 mRNA extraction P-0.2-aliquot2 biotin labeling P-0.2-aliquot2 biotin EukGE-WS4 HYB:MEXP:3941 A-AFFY-27 SCAN:MEXP:3941 E-MEXP-115-raw-data-331223115.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental phosphorus 0.2 l/hr
-P-0.2-aliquot3 mRNA extraction P-0.2-aliquot3 biotin labeling P-0.2-aliquot3 biotin EukGE-WS4 HYB:MEXP:3942 A-AFFY-27 SCAN:MEXP:3942 E-MEXP-115-raw-data-331223321.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental phosphorus 0.2 l/hr
-P-0.2-aliquot4 mRNA extraction P-0.2-aliquot4 biotin labeling P-0.2-aliquot4 biotin EukGE-WS4 HYB:MEXP:3939 A-AFFY-27 SCAN:MEXP:3939 E-MEXP-115-raw-data-331222701.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental phosphorus 0.2 l/hr
-S-0.07-aliquot1 mRNA extraction S-0.07-aliquot1 biotin labeling S-0.07-aliquot1 biotin EukGE-WS4 HYB:MEXP:3944 A-AFFY-27 SCAN:MEXP:3944 E-MEXP-115-raw-data-331223667.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental sulfur 0.07 l/hr
-S-0.07-aliquot2 mRNA extraction S-0.07-aliquot2 biotin labeling S-0.07-aliquot2 biotin EukGE-WS4 HYB:MEXP:3945 A-AFFY-27 SCAN:MEXP:3945 E-MEXP-115-raw-data-331223835.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental sulfur 0.07 l/hr
-S-0.07-aliquot3 mRNA extraction S-0.07-aliquot3 biotin labeling S-0.07-aliquot3 biotin EukGE-WS4 HYB:MEXP:3946 A-AFFY-27 SCAN:MEXP:3946 E-MEXP-115-raw-data-331223977.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental sulfur 0.07 l/hr
-S-0.07-aliquot4 mRNA extraction S-0.07-aliquot4 biotin labeling S-0.07-aliquot4 biotin EukGE-WS4 HYB:MEXP:3943 A-AFFY-27 SCAN:MEXP:3943 E-MEXP-115-raw-data-331223501.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental sulfur 0.07 l/hr
-S-0.1-aliquot1 mRNA extraction S-0.1-aliquot1 biotin labeling S-0.1-aliquot1 biotin EukGE-WS4 HYB:MEXP:3948 A-AFFY-27 SCAN:MEXP:3948 E-MEXP-115-raw-data-331224301.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental sulfur 0.1 l/hr
-S-0.1-aliquot2 mRNA extraction S-0.1-aliquot2 biotin labeling S-0.1-aliquot2 biotin EukGE-WS4 HYB:MEXP:3947 A-AFFY-27 SCAN:MEXP:3947 E-MEXP-115-raw-data-331224145.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental sulfur 0.1 l/hr
-S-0.1-aliquot3 mRNA extraction S-0.1-aliquot3 biotin labeling S-0.1-aliquot3 biotin EukGE-WS4 HYB:MEXP:3950 A-AFFY-27 SCAN:MEXP:3950 E-MEXP-115-raw-data-331224703.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental sulfur 0.1 l/hr
-S-0.1-aliquot4 mRNA extraction S-0.1-aliquot4 biotin labeling S-0.1-aliquot4 biotin EukGE-WS4 HYB:MEXP:3949 A-AFFY-27 SCAN:MEXP:3949 E-MEXP-115-raw-data-331224480.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental sulfur 0.1 l/hr
-S-0.2-aliquot1 mRNA extraction S-0.2-aliquot1 biotin labeling S-0.2-aliquot1 biotin EukGE-WS4 HYB:MEXP:3951 A-AFFY-27 SCAN:MEXP:3951 E-MEXP-115-raw-data-331224884.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental sulfur 0.2 l/hr
-S-0.2-aliquot2 mRNA extraction S-0.2-aliquot2 biotin labeling S-0.2-aliquot2 biotin EukGE-WS4 HYB:MEXP:3954 A-AFFY-27 SCAN:MEXP:3954 E-MEXP-115-raw-data-331225401.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental sulfur 0.2 l/hr
-S-0.2-aliquot3 mRNA extraction S-0.2-aliquot3 biotin labeling S-0.2-aliquot3 biotin EukGE-WS4 HYB:MEXP:3952 A-AFFY-27 SCAN:MEXP:3952 E-MEXP-115-raw-data-331225097.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental sulfur 0.2 l/hr
-S-0.2-aliquot4 mRNA extraction S-0.2-aliquot4 biotin labeling S-0.2-aliquot4 biotin EukGE-WS4 HYB:MEXP:3953 A-AFFY-27 SCAN:MEXP:3953 E-MEXP-115-raw-data-331225235.txt GCRMA normalization E-MEXP-115-processed-data-1341986893.txt elemental sulfur 0.2 l/hr
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diff --git a/src/test/resources/test-data/BII-I-1/i_investigation.txt b/src/test/resources/test-data/BII-I-1/i_investigation.txt
index d897efd9..bcfddce3 100644
--- a/src/test/resources/test-data/BII-I-1/i_investigation.txt
+++ b/src/test/resources/test-data/BII-I-1/i_investigation.txt
@@ -1,8 +1,8 @@
ONTOLOGY SOURCE REFERENCE
-Term Source Name
-Term Source File
-Term Source Version
-Term Source Description
+Term Source Name "CHEBI" "CL" "OBI" "NCBITAXON" "OBI_BCGO" "PATO" "UO"
+Term Source File "http://data.bioontology.org/ontologies/CHEBI" "http://data.bioontology.org/ontologies/CL" "http://data.bioontology.org/ontologies/OBI" "http://data.bioontology.org/ontologies/NCBITAXON" "http://data.bioontology.org/ontologies/OBI_BCGO" "http://data.bioontology.org/ontologies/PATO" "http://data.bioontology.org/ontologies/UO"
+Term Source Version "78" "43" "21" "2" "8" "160" "42"
+Term Source Description "Chemical Entities of Biological Interest Ontology" "Cell Ontology" "Ontology for Biomedical Investigations" "National Center for Biotechnology Information (NCBI) Organismal Classification" "Beta Cell Genomics Ontology" "Phenotypic Quality Ontology" "Units of Measurement Ontology"
INVESTIGATION
Investigation Identifier "BII-I-1"
Investigation Title "Growth control of the eukaryote cell: a systems biology study in yeast"
@@ -72,14 +72,14 @@ Study Factor Type "chemical entity" "rate"
Study Factor Type Term Accession Number "http://purl.obolibrary.org/obo/CHEBI_24431" "http://purl.obolibrary.org/obo/PATO_0000161"
Study Factor Type Term Source REF "CHEBI" "PATO"
STUDY ASSAYS
-Study Assay File Name "a_metabolome.txt" "a_proteome.txt" "a_transcriptome.txt"
-Study Assay Measurement Type "metabolite profiling" "protein expression profiling" "transcription profiling"
-Study Assay Measurement Type Term Accession Number "http://purl.obolibrary.org/obo/OBI_0000366" "http://purl.obolibrary.org/obo/OBI_0000615" "http://purl.obolibrary.org/obo/OBI_0000424"
+Study Assay File Name "a_proteome.txt" "a_metabolome.txt" "a_transcriptome.txt"
+Study Assay Measurement Type "protein expression profiling" "metabolite profiling" "transcription profiling"
+Study Assay Measurement Type Term Accession Number "http://purl.obolibrary.org/obo/OBI_0000615" "http://purl.obolibrary.org/obo/OBI_0000366" "http://purl.obolibrary.org/obo/OBI_0000424"
Study Assay Measurement Type Term Source REF "OBI" "OBI" "OBI"
Study Assay Technology Type "mass spectrometry" "mass spectrometry" "DNA microarray"
Study Assay Technology Type Term Accession Number "http://purl.obolibrary.org/obo/OBI_0000470" "http://purl.obolibrary.org/obo/OBI_0000470" "http://purl.obolibrary.org/obo/OBI_0400148"
Study Assay Technology Type Term Source REF "OBI" "OBI" "OBI"
-Study Assay Technology Platform "LC-MS/MS" "iTRAQ" "Affymetrix"
+Study Assay Technology Platform "iTRAQ" "LC-MS/MS" "Affymetrix"
STUDY PROTOCOLS
Study Protocol Name "growth protocol" "mRNA extraction" "protein extraction" "biotin labeling" "ITRAQ labeling" "EukGE-WS4" "metabolite extraction"
Study Protocol Type "growth" "RNA extraction" "extraction" "addition of molecular label" "addition of molecular label" "nucleic acid hybridization" "extraction"
diff --git a/src/test/resources/test-data/BII-I-1/s_BII-S-1.txt b/src/test/resources/test-data/BII-I-1/s_BII-S-1.txt
index 94f768d5..f0b691c1 100644
--- a/src/test/resources/test-data/BII-I-1/s_BII-S-1.txt
+++ b/src/test/resources/test-data/BII-I-1/s_BII-S-1.txt
@@ -1,165 +1,165 @@
-Source Name Characteristics[organism] Characteristics[strain] Characteristics[genotype] Protocol REF Sample Name Factor Value[limiting nutrient] Factor Value[rate] Unit
-culture1 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.07-aliquot1 elemental carbon 0.07 l/hour
-culture1 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.07-aliquot2 elemental carbon 0.07 l/hour
-culture1 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.07-aliquot3 elemental carbon 0.07 l/hour
-culture1 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.07-aliquot4 elemental carbon 0.07 l/hour
-culture1 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.07-aliquot5 elemental carbon 0.07 l/hour
-culture1 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.07-aliquot6 elemental carbon 0.07 l/hour
-culture1 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.07-aliquot7 elemental carbon 0.07 l/hour
-culture1 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.07-aliquot8 elemental carbon 0.07 l/hour
-culture1 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.07-aliquot9 elemental carbon 0.07 l/hour
-culture1 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.07-aliquot10 elemental carbon 0.07 l/hour
-culture2 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.1-aliquot1 elemental carbon 0.1 l/hour
-culture2 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.1-aliquot2 elemental carbon 0.1 l/hour
-culture2 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.1-aliquot3 elemental carbon 0.1 l/hour
-culture2 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.1-aliquot4 elemental carbon 0.1 l/hour
-culture2 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.1-aliquot5 elemental carbon 0.1 l/hour
-culture2 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.1-aliquot6 elemental carbon 0.1 l/hour
-culture2 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.1-aliquot7 elemental carbon 0.1 l/hour
-culture2 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.1-aliquot8 elemental carbon 0.1 l/hour
-culture2 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.1-aliquot9 elemental carbon 0.1 l/hour
-culture2 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.1-aliquot10 elemental carbon 0.1 l/hour
-culture2 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.1-aliquot11 elemental carbon 0.1 l/hour
-culture3 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.2-aliquot1 elemental carbon 0.2 l/hour
-culture3 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.2-aliquot2 elemental carbon 0.2 l/hour
-culture3 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.2-aliquot3 elemental carbon 0.2 l/hour
-culture3 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.2-aliquot4 elemental carbon 0.2 l/hour
-culture3 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.2-aliquot5 elemental carbon 0.2 l/hour
-culture3 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.2-aliquot6 elemental carbon 0.2 l/hour
-culture3 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.2-aliquot7 elemental carbon 0.2 l/hour
-culture3 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.2-aliquot8 elemental carbon 0.2 l/hour
-culture3 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.2-aliquot9 elemental carbon 0.2 l/hour
-culture3 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.2-aliquot10 elemental carbon 0.2 l/hour
-culture3 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol C-0.2-aliquot11 elemental carbon 0.2 l/hour
-culture4 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.07-aliquot1 elemental nitrogen 0.07 l/hour
-culture4 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.07-aliquot2 elemental nitrogen 0.07 l/hour
-culture4 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.07-aliquot3 elemental nitrogen 0.07 l/hour
-culture4 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.07-aliquot4 elemental nitrogen 0.07 l/hour
-culture4 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.07-aliquot5 elemental nitrogen 0.07 l/hour
-culture4 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.07-aliquot6 elemental nitrogen 0.07 l/hour
-culture4 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.07-aliquot7 elemental nitrogen 0.07 l/hour
-culture4 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.07-aliquot8 elemental nitrogen 0.07 l/hour
-culture4 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.07-aliquot9 elemental nitrogen 0.07 l/hour
-culture4 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.07-aliquot10 elemental nitrogen 0.07 l/hour
-culture5 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.1-aliquot1 elemental nitrogen 0.1 l/hour
-culture5 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.1-aliquot2 elemental nitrogen 0.1 l/hour
-culture5 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.1-aliquot3 elemental nitrogen 0.1 l/hour
-culture5 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.1-aliquot4 elemental nitrogen 0.1 l/hour
-culture5 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.1-aliquot5 elemental nitrogen 0.1 l/hour
-culture5 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.1-aliquot6 elemental nitrogen 0.1 l/hour
-culture5 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.1-aliquot7 elemental nitrogen 0.1 l/hour
-culture5 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.1-aliquot8 elemental nitrogen 0.1 l/hour
-culture5 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.1-aliquot9 elemental nitrogen 0.1 l/hour
-culture5 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.1-aliquot10 elemental nitrogen 0.1 l/hour
-culture5 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.1-aliquot11 elemental nitrogen 0.1 l/hour
-culture6 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.2-aliquot1 elemental nitrogen 0.2 l/hour
-culture6 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.2-aliquot2 elemental nitrogen 0.2 l/hour
-culture6 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.2-aliquot3 elemental nitrogen 0.2 l/hour
-culture6 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.2-aliquot4 elemental nitrogen 0.2 l/hour
-culture6 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.2-aliquot5 elemental nitrogen 0.2 l/hour
-culture6 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.2-aliquot6 elemental nitrogen 0.2 l/hour
-culture6 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.2-aliquot7 elemental nitrogen 0.2 l/hour
-culture6 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.2-aliquot8 elemental nitrogen 0.2 l/hour
-culture6 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.2-aliquot9 elemental nitrogen 0.2 l/hour
-culture6 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.2-aliquot10 elemental nitrogen 0.2 l/hour
-culture6 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol N-0.2-aliquot11 elemental nitrogen 0.2 l/hour
-culture7 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.07-aliquot1 elemental phosphorus 0.07 l/hour
-culture7 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.07-aliquot2 elemental phosphorus 0.07 l/hour
-culture7 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.07-aliquot3 elemental phosphorus 0.07 l/hour
-culture7 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.07-aliquot4 elemental phosphorus 0.07 l/hour
-culture7 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.07-aliquot5 elemental phosphorus 0.07 l/hour
-culture7 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.07-aliquot6 elemental phosphorus 0.07 l/hour
-culture7 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.07-aliquot7 elemental phosphorus 0.07 l/hour
-culture7 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.07-aliquot8 elemental phosphorus 0.07 l/hour
-culture7 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.07-aliquot9 elemental phosphorus 0.07 l/hour
-culture7 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.07-aliquot10 elemental phosphorus 0.07 l/hour
-culture8 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.1-aliquot1 elemental phosphorus 0.1 l/hour
-culture8 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.1-aliquot2 elemental phosphorus 0.1 l/hour
-culture8 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.1-aliquot3 elemental phosphorus 0.1 l/hour
-culture8 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.1-aliquot4 elemental phosphorus 0.1 l/hour
-culture8 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.1-aliquot5 elemental phosphorus 0.1 l/hour
-culture8 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.1-aliquot6 elemental phosphorus 0.1 l/hour
-culture8 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.1-aliquot7 elemental phosphorus 0.1 l/hour
-culture8 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.1-aliquot8 elemental phosphorus 0.1 l/hour
-culture8 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.1-aliquot9 elemental phosphorus 0.1 l/hour
-culture8 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.1-aliquot10 elemental phosphorus 0.1 l/hour
-culture8 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.1-aliquot11 elemental phosphorus 0.1 l/hour
-culture9 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.2-aliquot1 elemental phosphorus 0.2 l/hour
-culture9 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.2-aliquot2 elemental phosphorus 0.2 l/hour
-culture9 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.2-aliquot3 elemental phosphorus 0.2 l/hour
-culture9 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.2-aliquot4 elemental phosphorus 0.2 l/hour
-culture9 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.2-aliquot5 elemental phosphorus 0.2 l/hour
-culture9 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.2-aliquot6 elemental phosphorus 0.2 l/hour
-culture9 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.2-aliquot7 elemental phosphorus 0.2 l/hour
-culture9 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.2-aliquot8 elemental phosphorus 0.2 l/hour
-culture9 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.2-aliquot9 elemental phosphorus 0.2 l/hour
-culture9 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.2-aliquot10 elemental phosphorus 0.2 l/hour
-culture9 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol P-0.2-aliquot11 elemental phosphorus 0.2 l/hour
-culture10 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.07-aliquot1 elemental sulfur 0.07 l/hour
-culture10 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.07-aliquot2 elemental sulfur 0.07 l/hour
-culture10 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.07-aliquot3 elemental sulfur 0.07 l/hour
-culture10 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.07-aliquot4 elemental sulfur 0.07 l/hour
-culture10 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.07-aliquot5 elemental sulfur 0.07 l/hour
-culture10 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.07-aliquot6 elemental sulfur 0.07 l/hour
-culture10 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.07-aliquot7 elemental sulfur 0.07 l/hour
-culture10 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.07-aliquot8 elemental sulfur 0.07 l/hour
-culture10 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.07-aliquot9 elemental sulfur 0.07 l/hour
-culture10 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.07-aliquot10 elemental sulfur 0.07 l/hour
-culture11 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.1-aliquot1 elemental sulfur 0.1 l/hour
-culture11 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.1-aliquot2 elemental sulfur 0.1 l/hour
-culture11 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.1-aliquot3 elemental sulfur 0.1 l/hour
-culture11 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.1-aliquot4 elemental sulfur 0.1 l/hour
-culture11 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.1-aliquot5 elemental sulfur 0.1 l/hour
-culture11 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.1-aliquot6 elemental sulfur 0.1 l/hour
-culture11 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.1-aliquot7 elemental sulfur 0.1 l/hour
-culture11 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.1-aliquot8 elemental sulfur 0.1 l/hour
-culture11 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.1-aliquot9 elemental sulfur 0.1 l/hour
-culture11 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.1-aliquot10 elemental sulfur 0.1 l/hour
-culture11 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.1-aliquot11 elemental sulfur 0.1 l/hour
-culture12 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.2-aliquot1 elemental sulfur 0.2 l/hour
-culture12 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.2-aliquot2 elemental sulfur 0.2 l/hour
-culture12 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.2-aliquot3 elemental sulfur 0.2 l/hour
-culture12 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.2-aliquot4 elemental sulfur 0.2 l/hour
-culture12 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.2-aliquot5 elemental sulfur 0.2 l/hour
-culture12 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.2-aliquot6 elemental sulfur 0.2 l/hour
-culture12 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.2-aliquot7 elemental sulfur 0.2 l/hour
-culture12 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.2-aliquot8 elemental sulfur 0.2 l/hour
-culture12 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.2-aliquot9 elemental sulfur 0.2 l/hour
-culture12 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.2-aliquot10 elemental sulfur 0.2 l/hour
-culture12 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol S-0.2-aliquot11 elemental sulfur 0.2 l/hour
-culture13 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol E-0.07-aliquot1 ethanol 0.07 l/hour
-culture13 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol E-0.07-aliquot2 ethanol 0.07 l/hour
-culture13 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol E-0.07-aliquot3 ethanol 0.07 l/hour
-culture13 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol E-0.07-aliquot4 ethanol 0.07 l/hour
-culture13 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol E-0.07-aliquot5 ethanol 0.07 l/hour
-culture13 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol E-0.07-aliquot6 ethanol 0.07 l/hour
-culture14 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol E-0.1-aliquot1 ethanol 0.1 l/hour
-culture14 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol E-0.1-aliquot2 ethanol 0.1 l/hour
-culture14 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol E-0.1-aliquot3 ethanol 0.1 l/hour
-culture14 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol E-0.1-aliquot4 ethanol 0.1 l/hour
-culture14 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol E-0.1-aliquot5 ethanol 0.1 l/hour
-culture14 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol E-0.1-aliquot6 ethanol 0.1 l/hour
-culture15 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol E-0.2-aliquot1 ethanol 0.2 l/hour
-culture15 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol E-0.2-aliquot2 ethanol 0.2 l/hour
-culture15 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol E-0.2-aliquot3 ethanol 0.2 l/hour
-culture15 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol E-0.2-aliquot4 ethanol 0.2 l/hour
-culture15 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol E-0.2-aliquot5 ethanol 0.2 l/hour
-culture15 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol E-0.2-aliquot6 ethanol 0.2 l/hour
-culture16 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol G-0.07-aliquot1 glucose 0.07 l/hour
-culture16 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol G-0.07-aliquot2 glucose 0.07 l/hour
-culture16 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol G-0.07-aliquot3 glucose 0.07 l/hour
-culture16 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol G-0.07-aliquot4 glucose 0.07 l/hour
-culture16 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol G-0.07-aliquot5 glucose 0.07 l/hour
-culture16 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol G-0.07-aliquot6 glucose 0.07 l/hour
-culture17 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol G-0.1-aliquot1 glucose 0.1 l/hour
-culture17 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol G-0.1-aliquot2 glucose 0.1 l/hour
-culture17 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol G-0.1-aliquot3 glucose 0.1 l/hour
-culture17 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol G-0.1-aliquot4 glucose 0.1 l/hour
-culture17 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol G-0.1-aliquot5 glucose 0.1 l/hour
-culture17 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol G-0.1-aliquot6 glucose 0.1 l/hour
-culture18 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol G-0.2-aliquot1 glucose 0.2 l/hour
-culture18 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol G-0.2-aliquot2 glucose 0.2 l/hour
-culture18 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol G-0.2-aliquot3 glucose 0.2 l/hour
-culture18 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol G-0.2-aliquot4 glucose 0.2 l/hour
-culture18 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol G-0.2-aliquot5 glucose 0.2 l/hour
-culture18 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD growth protocol G-0.2-aliquot6 glucose 0.2 l/hour
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+"culture11" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "S-0.1-aliquot11" "elemental sulfur" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33403" "0.1" "l/hour" "" ""
+"culture12" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "S-0.2-aliquot1" "elemental sulfur" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33403" "0.2" "l/hour" "" ""
+"culture12" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "S-0.2-aliquot2" "elemental sulfur" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33403" "0.2" "l/hour" "" ""
+"culture12" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "S-0.2-aliquot3" "elemental sulfur" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33403" "0.2" "l/hour" "" ""
+"culture12" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "S-0.2-aliquot4" "elemental sulfur" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33403" "0.2" "l/hour" "" ""
+"culture12" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "S-0.2-aliquot5" "elemental sulfur" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33403" "0.2" "l/hour" "" ""
+"culture12" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "S-0.2-aliquot6" "elemental sulfur" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33403" "0.2" "l/hour" "" ""
+"culture12" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "S-0.2-aliquot7" "elemental sulfur" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33403" "0.2" "l/hour" "" ""
+"culture12" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "S-0.2-aliquot8" "elemental sulfur" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33403" "0.2" "l/hour" "" ""
+"culture12" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "S-0.2-aliquot9" "elemental sulfur" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33403" "0.2" "l/hour" "" ""
+"culture12" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "S-0.2-aliquot10" "elemental sulfur" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33403" "0.2" "l/hour" "" ""
+"culture12" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "S-0.2-aliquot11" "elemental sulfur" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33403" "0.2" "l/hour" "" ""
+"culture13" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.07-aliquot1" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.07" "l/hour" "" ""
+"culture13" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.07-aliquot2" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.07" "l/hour" "" ""
+"culture13" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.07-aliquot3" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.07" "l/hour" "" ""
+"culture13" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.07-aliquot4" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.07" "l/hour" "" ""
+"culture13" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.07-aliquot5" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.07" "l/hour" "" ""
+"culture13" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.07-aliquot6" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.07" "l/hour" "" ""
+"culture14" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.1-aliquot1" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.1" "l/hour" "" ""
+"culture14" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.1-aliquot2" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.1" "l/hour" "" ""
+"culture14" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.1-aliquot3" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.1" "l/hour" "" ""
+"culture14" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.1-aliquot4" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.1" "l/hour" "" ""
+"culture14" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.1-aliquot5" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.1" "l/hour" "" ""
+"culture14" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.1-aliquot6" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.1" "l/hour" "" ""
+"culture15" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.2-aliquot1" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.2" "l/hour" "" ""
+"culture15" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.2-aliquot2" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.2" "l/hour" "" ""
+"culture15" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.2-aliquot3" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.2" "l/hour" "" ""
+"culture15" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.2-aliquot4" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.2" "l/hour" "" ""
+"culture15" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.2-aliquot5" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.2" "l/hour" "" ""
+"culture15" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.2-aliquot6" "ethanol" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_16236" "0.2" "l/hour" "" ""
+"culture16" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.07-aliquot1" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.07" "l/hour" "" ""
+"culture16" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.07-aliquot2" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.07" "l/hour" "" ""
+"culture16" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.07-aliquot3" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.07" "l/hour" "" ""
+"culture16" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.07-aliquot4" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.07" "l/hour" "" ""
+"culture16" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.07-aliquot5" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.07" "l/hour" "" ""
+"culture16" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.07-aliquot6" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.07" "l/hour" "" ""
+"culture17" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.1-aliquot1" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.1" "l/hour" "" ""
+"culture17" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.1-aliquot2" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.1" "l/hour" "" ""
+"culture17" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.1-aliquot3" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.1" "l/hour" "" ""
+"culture17" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.1-aliquot4" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.1" "l/hour" "" ""
+"culture17" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.1-aliquot5" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.1" "l/hour" "" ""
+"culture17" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.1-aliquot6" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.1" "l/hour" "" ""
+"culture18" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.2-aliquot1" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.2" "l/hour" "" ""
+"culture18" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.2-aliquot2" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.2" "l/hour" "" ""
+"culture18" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.2-aliquot3" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.2" "l/hour" "" ""
+"culture18" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.2-aliquot4" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.2" "l/hour" "" ""
+"culture18" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.2-aliquot5" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.2" "l/hour" "" ""
+"culture18" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.2-aliquot6" "glucose" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_17234" "0.2" "l/hour" "" ""
diff --git a/src/test/resources/test-data/BII-I-1/s_BII-S-2.txt b/src/test/resources/test-data/BII-I-1/s_BII-S-2.txt
index 36b3b3ef..9c366671 100644
--- a/src/test/resources/test-data/BII-I-1/s_BII-S-2.txt
+++ b/src/test/resources/test-data/BII-I-1/s_BII-S-2.txt
@@ -1,15 +1,15 @@
-Source Name Characteristics[organism] Characteristics[strain] Characteristics[genotype] Characteristics[mating type] Protocol REF Sample Name Factor Value[dose] Unit Factor Value[exposure time] Unit Factor Value[compound]
-NZ_0hrs_Grow_1 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD alpha mating type (yeast) NZ_0hrs_Grow1_Sample_1 0 nanogram per milliliter 0 hour
-NZ_0hrs_Grow_1 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD alpha mating type (yeast) NZ_1hrs_Grow1_Drug_Sample_1 200 nanogram per milliliter 1 hour sirolimus
-NZ_0hrs_Grow_1 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD alpha mating type (yeast) NZ_2hrs_Grow1_Drug_Sample_1 200 nanogram per milliliter 2 hour sirolimus
-NZ_0hrs_Grow_1 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD alpha mating type (yeast) NZ_4hrs_Grow1_Drug_Sample_1 200 nanogram per milliliter 4 hour sirolimus
-NZ_0hrs_Grow_1 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD alpha mating type (yeast) NZ_2hrs_Grow1_Vehicle_Sample_1 0 nanogram per milliliter 2 hour drug vehicle (90% ethanol/10% tween-20)
-NZ_0hrs_Grow_1 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD alpha mating type (yeast) NZ_4hrs_Grow1_Vehicle_Sample_1 0 nanogram per milliliter 4 hour drug vehicle (90% ethanol/10% tween-20)
-NZ_0hrs_Grow_1 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD alpha mating type (yeast) NZ_1hrs_Grow1_Vehicle_Sample_1 0 nanogram per milliliter 1 hour drug vehicle (90% ethanol/10% tween-20)
-NZ_0hrs_Grow_2 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD alpha mating type (yeast) NZ_0hrs_Grow2_Sample_2 0 nanogram per milliliter 0 hour
-NZ_0hrs_Grow_2 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD alpha mating type (yeast) NZ_1hrs_Grow2_Drug_Sample_2 200 nanogram per milliliter 1 hour sirolimus
-NZ_0hrs_Grow_2 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD alpha mating type (yeast) NZ_4hrs_Grow2_Drug_Sample_2 200 nanogram per milliliter 4 hour sirolimus
-NZ_0hrs_Grow_2 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD alpha mating type (yeast) NZ_2hrs_Grow2_Drug_Sample_2 200 nanogram per milliliter 2 hour sirolimus
-NZ_0hrs_Grow_2 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD alpha mating type (yeast) NZ_1hrs_Grow2_Vehicle_Sample_2 0 nanogram per milliliter 1 hour drug vehicle (90% ethanol/10% tween-20)
-NZ_0hrs_Grow_2 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD alpha mating type (yeast) NZ_2hrs_Grow2_Vehicle_Sample_2 0 nanogram per milliliter 2 hour drug vehicle (90% ethanol/10% tween-20)
-NZ_0hrs_Grow_2 Saccharomyces cerevisiae FY1679 KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD alpha mating type (yeast) NZ_4hrs_Grow2_Vehicle_Sample_2 0 nanogram per milliliter 4 hour drug vehicle (90% ethanol/10% tween-20)
+"Source Name" "Characteristics[organism]" "Term Source REF" "Term Accession Number" "Characteristics[strain]" "Term Source REF" "Term Accession Number" "Characteristics[genotype]" "Term Source REF" "Term Accession Number" "Characteristics[mating type]" "Term Source REF" "Term Accession Number" "Protocol REF" "Sample Name" "Factor Value[dose]" "Unit" "Term Source REF" "Term Accession Number" "Factor Value[exposure time]" "Unit" "Term Source REF" "Term Accession Number" "Factor Value[compound]" "Term Source REF" "Term Accession Number"
+"NZ_0hrs_Grow_1" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "alpha mating type (yeast)" "OBI" "http://purl.obolibrary.org/obo/PATO_0001344" "" "NZ_0hrs_Grow1_Sample_1" "0" "nanogram per milliliter" "UO" "http://purl.obolibrary.org/obo/UO_0000275" "0" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032" "" "" ""
+"NZ_0hrs_Grow_1" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "alpha mating type (yeast)" "OBI" "http://purl.obolibrary.org/obo/PATO_0001344" "" "NZ_1hrs_Grow1_Drug_Sample_1" "200" "nanogram per milliliter" "UO" "http://purl.obolibrary.org/obo/UO_0000275" "1" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032" "sirolimus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_9168"
+"NZ_0hrs_Grow_1" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "alpha mating type (yeast)" "OBI" "http://purl.obolibrary.org/obo/PATO_0001344" "" "NZ_2hrs_Grow1_Drug_Sample_1" "200" "nanogram per milliliter" "UO" "http://purl.obolibrary.org/obo/UO_0000275" "2" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032" "sirolimus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_9168"
+"NZ_0hrs_Grow_1" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "alpha mating type (yeast)" "OBI" "http://purl.obolibrary.org/obo/PATO_0001344" "" "NZ_4hrs_Grow1_Drug_Sample_1" "200" "nanogram per milliliter" "UO" "http://purl.obolibrary.org/obo/UO_0000275" "4" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032" "sirolimus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_9168"
+"NZ_0hrs_Grow_1" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "alpha mating type (yeast)" "OBI" "http://purl.obolibrary.org/obo/PATO_0001344" "" "NZ_2hrs_Grow1_Vehicle_Sample_1" "0" "nanogram per milliliter" "UO" "http://purl.obolibrary.org/obo/UO_0000275" "2" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032" "drug vehicle (90% ethanol/10% tween-20)" "" ""
+"NZ_0hrs_Grow_1" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "alpha mating type (yeast)" "OBI" "http://purl.obolibrary.org/obo/PATO_0001344" "" "NZ_4hrs_Grow1_Vehicle_Sample_1" "0" "nanogram per milliliter" "UO" "http://purl.obolibrary.org/obo/UO_0000275" "4" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032" "drug vehicle (90% ethanol/10% tween-20)" "" ""
+"NZ_0hrs_Grow_1" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "alpha mating type (yeast)" "OBI" "http://purl.obolibrary.org/obo/PATO_0001344" "" "NZ_1hrs_Grow1_Vehicle_Sample_1" "0" "nanogram per milliliter" "UO" "http://purl.obolibrary.org/obo/UO_0000275" "1" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032" "drug vehicle (90% ethanol/10% tween-20)" "" ""
+"NZ_0hrs_Grow_2" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "alpha mating type (yeast)" "OBI" "http://purl.obolibrary.org/obo/PATO_0001344" "" "NZ_0hrs_Grow2_Sample_2" "0" "nanogram per milliliter" "UO" "http://purl.obolibrary.org/obo/UO_0000275" "0" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032" "" "" ""
+"NZ_0hrs_Grow_2" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "alpha mating type (yeast)" "OBI" "http://purl.obolibrary.org/obo/PATO_0001344" "" "NZ_1hrs_Grow2_Drug_Sample_2" "200" "nanogram per milliliter" "UO" "http://purl.obolibrary.org/obo/UO_0000275" "1" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032" "sirolimus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_9168"
+"NZ_0hrs_Grow_2" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "alpha mating type (yeast)" "OBI" "http://purl.obolibrary.org/obo/PATO_0001344" "" "NZ_4hrs_Grow2_Drug_Sample_2" "200" "nanogram per milliliter" "UO" "http://purl.obolibrary.org/obo/UO_0000275" "4" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032" "sirolimus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_9168"
+"NZ_0hrs_Grow_2" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "alpha mating type (yeast)" "OBI" "http://purl.obolibrary.org/obo/PATO_0001344" "" "NZ_2hrs_Grow2_Drug_Sample_2" "200" "nanogram per milliliter" "UO" "http://purl.obolibrary.org/obo/UO_0000275" "2" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032" "sirolimus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_9168"
+"NZ_0hrs_Grow_2" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "alpha mating type (yeast)" "OBI" "http://purl.obolibrary.org/obo/PATO_0001344" "" "NZ_1hrs_Grow2_Vehicle_Sample_2" "0" "nanogram per milliliter" "UO" "http://purl.obolibrary.org/obo/UO_0000275" "1" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032" "drug vehicle (90% ethanol/10% tween-20)" "" ""
+"NZ_0hrs_Grow_2" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "alpha mating type (yeast)" "OBI" "http://purl.obolibrary.org/obo/PATO_0001344" "" "NZ_2hrs_Grow2_Vehicle_Sample_2" "0" "nanogram per milliliter" "UO" "http://purl.obolibrary.org/obo/UO_0000275" "2" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032" "drug vehicle (90% ethanol/10% tween-20)" "" ""
+"NZ_0hrs_Grow_2" "Saccharomyces cerevisiae" "NCBITAXON" "http://purl.obolibrary.org/obo/NCBITaxon_4932" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "alpha mating type (yeast)" "OBI" "http://purl.obolibrary.org/obo/PATO_0001344" "" "NZ_4hrs_Grow2_Vehicle_Sample_2" "0" "nanogram per milliliter" "UO" "http://purl.obolibrary.org/obo/UO_0000275" "4" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032" "drug vehicle (90% ethanol/10% tween-20)" "" ""