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README.md

cosmic-database

Access COSMIC cancer mutation database.

Setup

cd cosmic-database
python3 -m venv .venv && source .venv/bin/activate && pip install download_cosmic getpass gzip requests -q

Environment variables

  • COSMIC_EMAIL
  • COSMIC_PASSWORD

Usage

python3 scripts/query.py --help

Dependencies

  • download_cosmic
  • getpass
  • gzip
  • requests