DESCRIPTION

Package: ssvQC
Type: Package
Title: QC for enrichment based NGS
Version: 1.0.22
Authors@R: person("Joseph R", "Boyd", email = "jrboyd@uvm.edu",
                  role = c("aut", "cre"))
Description: Peak comparison augmented with signal.  Fraction of Reads in Peaks (FRIP). Strand Cross-Correlation (SCC).
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Suggests:
    BiocManager,
    BiocStyle,
    ChIPpeakAnno,
    covr,
    knitr,
    rmarkdown,
    testthat
Depends: R (>= 3.6), ggplot2, data.table, GenomicRanges
Imports:
    BiocFileCache,
    cowplot,
    digest,
    GenomeInfoDb,
    GenomicAlignments,
    ggplotify,
    grid,
    IRanges,
    methods,
    pbapply,
    pbmcapply,
    pheatmap,
    reshape2,
    png,
    RColorBrewer,
    Rsamtools,
    rtracklayer,
    scales,
    seqsetvis (>= 1.13.1),
    S4Vectors,
    stats
RoxygenNote: 7.3.1
biocViews: Software, ChIPSeq, MultipleComparison, Sequencing, Visualization