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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(ChIPtSNE)
export(ChIPtSNE.runTSNE)
export(ClusteredSignal_TSNE.null)
export(ConfigFeatures)
export(ConfigFeatures.GRanges)
export(ConfigFeatures.files)
export(ConfigFeatures.parse)
export(ConfigFeatures.save_config)
export(ConfigSignal)
export(ConfigSignal.files)
export(ctClusterPoints)
export(ctPlotBinAggregates)
export(ctPlotPoints)
export(ctPlotPointsAnnotation)
export(ctPlotSummaryProfiles)
export(prep_images)
export(prep_summary)
export(runExample)
export(run_umap)
export(sampleCap)
exportClasses(ClusteredSignal_TSNE)
import(Rtsne)
import(data.table, except = c(shift, first, second, last, melt, dcast))
import(ggimage)
import(reshape2)
import(umap)
importClassesFrom(ssvQC,ssvQC.complete)
importFrom(BiocFileCache,BiocFileCache)
importFrom(GGally,glyphs)
importFrom(GenomicRanges,width)
importFrom(Matrix,Matrix)
importFrom(RANN,nn2)
importFrom(concaveman,concaveman)
importFrom(digest,digest)
importFrom(ggplot2,Geom)
importFrom(ggplot2,aes)
importFrom(ggplot2,draw_key_blank)
importFrom(ggplot2,ggproto)
importFrom(ggplot2,layer)
importFrom(ggrepel,geom_label_repel)
importFrom(ggrepel,geom_text_repel)
importFrom(grDevices,chull)
importFrom(grDevices,col2rgb)
importFrom(grDevices,rgb)
importFrom(grid,gList)
importFrom(grid,gTree)
importFrom(grid,gpar)
importFrom(grid,grobName)
importFrom(grid,rasterGrob)
importFrom(grid,viewport)
importFrom(igraph,cluster_walktrap)
importFrom(igraph,graph.adjacency)
importFrom(igraph,simplify)
importFrom(magick,image_info)
importFrom(magick,image_read)
importFrom(magick,image_read_pdf)
importFrom(magick,image_read_svg)
importFrom(magick,image_rotate)
importFrom(magick,image_transparent)
importFrom(methods,is)
importFrom(scales,rescale)
importFrom(seqsetvis,applySpline)
importFrom(seqsetvis,safeBrew)
importFrom(seqsetvis,ssvFetchBam)
importFrom(seqsetvis,ssvFetchBigwig)
importFrom(shiny,runApp)
importFrom(stats,quantile)
importFrom(stats,spline)
importFrom(tools,file_ext)
importMethodsFrom(ssvQC,ssvQC.plotSignal)
importMethodsFrom(ssvQC,ssvQC.prepSignal)
importMethodsFrom(ssvQC,ssvQC.runAll)