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Copy pathmiura_max_curvature.asv
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miura_max_curvature.asv
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function veins = miura_max_curvature(img, fvr, sigma)
% Construct filter kernels
winsize = ceil(4*sigma);
[X,Y] = meshgrid(-winsize:winsize, -winsize:winsize);
h = (1/(2*pi*sigma^2)).*exp(-(X.^2 + Y.^2)/(2*sigma^2));
hx = (-X/(sigma^2)).*h;
hxx = ((X.^2 - sigma^2)/(sigma^4)).*h;
hy = hx';
hyy = hxx';
hxy = ((X.*Y)/(sigma^4)).*h;
% Do the actual filtering
fx = imfilter(img, hx, 'replicate', 'conv');
fxx = imfilter(img, hxx, 'replicate', 'conv');
fy = imfilter(img, hy, 'replicate', 'conv');
fyy = imfilter(img, hyy, 'replicate', 'conv');
fxy = imfilter(img, hxy, 'replicate', 'conv');
f1 = 0.5*sqrt(2)*(fx + fy); % \
f2 = 0.5*sqrt(2)*(fx - fy); % /
f11 = 0.5*fxx + fxy + 0.5*fyy; % \\
f22 = 0.5*fxx - fxy + 0.5*fyy; % //
[img_h, img_w] = size(img);
%% Calculate curvatures
k = zeros(img_h, img_w, 4);
k(:,:,1)= (fxx./((1 + fx.^2).^(3/2))).*fvr; % hor
k(:,:,2) = (fyy./((1 + fy.^2).^(3/2))).*fvr; % ver
k(:,:,3) = (f11./((1 + f1.^2).^(3/2))).*fvr; % \
k(:,:,4) = (f22./((1 + f2.^2).^(3/2))).*fvr; % /
%% Scores
%V = zeros(img_h, img_w, 4);
Vt = zeros(img_h, img_w, 4);
Wr = 0;
% Horizontal direction
bla = k(:,:,1) > 0;
for y=1:img_h
for x=1:img_w
if(bla(y,x))
Wr = Wr + 1;
end
if ( Wr > 0 && (x == img_w || ~bla(y,x)) )
if (x == img_w)
% Reached edge of image
pos_end = x;
else
pos_end = x - 1;
end
pos_start = pos_end - Wr + 1; % Start pos of concave
[~, I] = max(k(y, pos_start:pos_end,1));
pos_max = pos_start + I - 1;
Scr = k(y,pos_max,1)*Wr;
%V(y,pos_max,1) = V(y,pos_max,1) + Scr;
Vt(y,pos_max) = Vt(y,pos_max) + Scr;
Wr = 0;
end
end
end
% Vertical direction
bla = k(:,:,2) > 0;
for x=1:img_w
for y=1:img_h
if(bla(y,x))
Wr = Wr + 1;
end
if ( Wr > 0 && (y == img_h || ~bla(y,x)) )
if (x == img_h)
% Reached edge of image
pos_end = y;
else
pos_end = y - 1;
end
pos_start = pos_end - Wr + 1; % Start pos of concave
[~, I] = max(k(pos_start:pos_end,x,2));
pos_max = pos_start + I - 1;
Scr = k(pos_max,x,2)*Wr;
%V(pos_max,x,2) = V(pos_max,x,2) + Scr;
Vt(pos_max,x) = Vt(pos_max,x) + Scr;
Wr = 0;
end
end
end
% Direction: \
bla = k(:,:,3) > 0;
for start=1:(img_w+img_h-1)
% Initial values
if (start <= img_w)
x = start;
y = 1;
else
x = 1;
y = start - img_w + 1;
end
done = false;
while ~done
if(bla(y,x))
Wr = Wr + 1;
end
if ( Wr > 0 && (y == img_h || x == img_w || ~bla(y,x)) )
if (y == img_h || x == img_w)
% Reached edge of image
pos_x_end = x;
pos_y_end = y;
else
pos_x_end = x - 1;
pos_y_end = y - 1;
end
pos_x_start = pos_x_end - Wr + 1;
pos_y_start = pos_y_end - Wr + 1;
%d = diag(k(pos_y_start:pos_y_end, pos_x_start:pos_x_end, 3));
% More efficient implementation than diag(..)
d = k(((pos_x_start-1)*img_h + pos_y_start + 2*img_w*img_h):(img_h + 1):((pos_x_end-1)*img_h + pos_y_end + 2*img_w*img_h));
[~, I] = max(d);
pos_x_max = pos_x_start + I - 1;
pos_y_max = pos_y_start + I - 1;
Scr = k(pos_y_max,pos_x_max,3)*Wr;
%V(pos_y_max,pos_x_max,3) = V(pos_y_max,pos_x_max,3) + Scr;
Vt(pos_y_max,pos_x_max) = Vt(pos_y_max,pos_x_max) + Scr;
Wr = 0;
end
if((x == img_w) || (y == img_h))
done = true;
else
x = x + 1;
y = y + 1;
end
end
end
% Direction: /
bla = k(:,:,4) > 0;
for start=1:(img_w+img_h-1)
% Initial values
if (start <= img_w)
x = start;
y = img_h;
else
x = 1;
y = img_w+img_h-start;
end
done = false;
while ~done
if(bla(y,x))
Wr = Wr + 1;
end
if ( Wr > 0 && (y == 1 || x == img_w || ~bla(y,x)) )
if (y == 1 || x == img_w)
% Reached edge of image
pos_x_end = x;
pos_y_end = y;
else
pos_x_end = x - 1;
pos_y_end = y + 1;
end
pos_x_start = pos_x_end - Wr + 1;
pos_y_start = pos_y_end + Wr - 1;
%d = diag(flipud(k(pos_y_end:pos_y_start, pos_x_start:pos_x_end, 4)));
% More efficient implementation than diag(flipud(..))
d = k(((pos_x_start-1)*img_h + pos_y_start + 3*img_w*img_h):(img_h - 1):((pos_x_end-1)*img_h + pos_y_end + 3*img_w*img_h));
[~, I] = max(d);
pos_x_max = pos_x_start + I - 1;
pos_y_max = pos_y_start - I + 1;
Scr = k(pos_y_max,pos_x_max,4)*Wr;
%V(pos_y_max,pos_x_max,4) = V(pos_y_max,pos_x_max,4) + Scr;
Vt(pos_y_max,pos_x_max) = Vt(pos_y_max,pos_x_max) + Scr;
Wr = 0;
end
if((x == img_w) || (y == 1))
done = true;
else
x = x + 1;
y = y - 1;
end
end
end
%Vt = V(:,:,1) + V(:,:,2) + V(:,:,3) + V(:,:,4);
%% Connection of vein centres
Cd = zeros(img_h, img_w, 4);
for x=3:img_w-3
for y=3:img_h-3
Cd(y,x,1) = min(max(Vt(y,x+1), Vt(y,x+2)) ,...
max(Vt(y,x-1), Vt(y,x-2))); % Hor
Cd(y,x,2) = min(max(Vt(y+1,x), Vt(y+2,x)) ,...
max(Vt(y-1,x), Vt(y-2,x))); % Vert
Cd(y,x,3) = min(max(Vt(y-1,x-1),Vt(y-2,x-2)),...
max(Vt(y+1,x+1),Vt(y+2,x+2))); % \
Cd(y,x,4) = min(max(Vt(y+1,x-1),Vt(y+2,x-2)),...
max(Vt(y-1,x+1),Vt(y-2,x+2))); % /
end
end
veins = max(Cd,[],3);
% %% Plot results
% figure('Name', 'Second order derivatives');
% subplot(2,2,1);
% imshow(fxx, []);
% title('Horizontal');
% subplot(2,2,2);
% imshow(fyy, []);
% title('Vertical');
% subplot(2,2,3);
% imshow(f11, []);
% title('\');
% subplot(2,2,4);
% imshow(f22, []);
% title('/');
%
% figure('Name', 'Curvatures');
% subplot(2,2,1);
% %imshow(log(k(:,:,1) + 1), []);
% imshow(k(:,:,1) > 0, []);
% title('Horizontal');
% subplot(2,2,2);
% %imshow(log(k(:,:,2) + 1), []);
% imshow(k(:,:,2) > 0, []);
% title('Vertical');
% subplot(2,2,3);
% %imshow(log(k(:,:,3) + 1), []);
% imshow(k(:,:,3) > 0, []);
% title('\');
% subplot(2,2,4);
% %imshow(log(k(:,:,4) + 1), []);
% imshow(k(:,:,4) > 0, []);
% title('/');
%
% figure('Name', 'Scores');
% subplot(2,2,1);
% imshow(V(:,:,1));
% title('Horizontal');
% subplot(2,2,2);
% imshow(V(:,:,2));
% title('Vertical');
% subplot(2,2,3);
% imshow(V(:,:,3));
% title('\');
% subplot(2,2,4);
% imshow(V(:,:,3));
% title('/');