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config.js
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config.js
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var papaya = papaya || {};
papaya.data = papaya.data || {};
papaya.data.Atlas = papaya.data.Atlas || {};
let core_data = "core_data"
var params = [];
const drawColor2Surface = () => {
const surface = papayaContainers[0].viewer.surfaces[0]
const viewer = papayaContainers[0].viewer
// 这里1
const volume = papayaContainers[0].viewer.screenVolumes.at(-1).volume
console.log(surface, viewer,volume)
console.log(surface.parametricData)
const currFileName = volume.fileName
const params = volume.params
const surfaceDataUrl = params[currFileName]?.coloredSurface
// console.log(currFileName, params, surfaceDataUrl)
// const surfaceDataUrl = params['coloredSurface']
if(!surfaceDataUrl){
console.log(currFileName+' corresponding surface not found')
return
}
console.log("loading surface", surfaceDataUrl)
// const surfaceDataUrl = 'otherData//sub_all_5k_8k_gradient1_group.func.gii'
fetch(surfaceDataUrl, {
method: 'GET',
headers: {
'Content-Type': 'text/xml',
},
}).then(res=>res.text()).then(_data=>{
const data = gifti.parse(_data).getZScoresDataArray().getData()
surface.parametricData.push({
viewer: viewer,
volume: volume,
data: data,
})
viewer.drawViewer(!0)
console.log('done')
})
}
papaya.data.configureAtlas = async function (viewer) {
if (this.atlas === null) {
return;
}
drawColor2Surface()
return
// let boundaryData = viewer.atlas.boundaryData;
// let boundaryVolumes = [];
// for (let key in papaya.data.Atlases) {
// try {
// if (papaya.data.Atlases.hasOwnProperty(key)) {
// let volume = papaya.data.Atlases[key].atlas.boundaryData.volume;
// if (volume && volume !== boundaryData.volume) {
// boundaryVolumes.push(volume);
// }
// }
// } catch (err) {
// // Unable to get volume, cannot be open
// }
// }
// let loadVolume = (viewer.container.preferences.showVolumeBoundaries === "Yes");
// console.log("showvolume? ",viewer.container.preferences.showVolumeBoundaries)
// let ctr = 0;
// while (ctr < viewer.screenVolumes.length) {
// // Unload current boundary if desired
// if (viewer.screenVolumes[ctr].volume === boundaryData.volume) {
// if (!loadVolume) {
// viewer.closeOverlay(ctr);
// break;
// }
// loadVolume = false;
// }
// // Unloaded other boundary files
// for (let ctr2 = 0; ctr2 < boundaryVolumes.length; ctr2++) {
// if (viewer.screenVolumes[ctr].volume === boundaryVolumes[ctr2]) {
// viewer.closeOverlay(ctr);
// break;
// }
// }
// ctr++;
// }
// // Load the required image boundary
// if (loadVolume) {
// if (boundaryData.volume && viewer.loadingVolume === null) {
// viewer.loadingVolume = boundaryData.volume;
// viewer.initializeOverlay();
// } else {
// viewer.loadOverlay([viewer.container.findLoadableImage(boundaryData.boundaryimagefile, false).url],
// true, false, false);
// boundaryData.volume = viewer.loadingVolume;
// }
// }
// // Load surface boundary data if not loaded
// if (boundaryData && boundaryData.data == null) {
// let result = viewer.container.findLoadableImage(boundaryData.boundarysurfacefile, false);
// if (result.url) {
// let data = await loadatlas(result.url, boundaryData);
// let gii = gifti.parse(data);
// if (gii.getZScoresDataArray()) {
// boundaryData.data = gii.getZScoresDataArray().getData();
// boundaryData.range.min = Math.min(...boundaryData.data);
// boundaryData.range.max = Math.max(...boundaryData.data);
// }
// }
// }
// // Display the surface boundaries
// if (viewer.surfaces.length > 0) {
// let surface = viewer.surfaces[0];
// boundaryData = (boundaryData && viewer.container.preferences.showSurfaceBoundaries === "Yes") ? boundaryData : null;
// if (boundaryData !== surface.boundaryData) {
// surface.boundaryData = boundaryData;
// surface.generateColorData();
// viewer.drawViewer();
// }
// }
// drawColor2Surface()
}
function loadatlas(url, boundaryData) {
return new Promise(function (resolve, reject) {
let xhr = new XMLHttpRequest();
xhr.open('GET', url);
xhr.onload = function () {
if (this.status >= 200 && this.status < 300) {
resolve(xhr.response);
} else {
reject({
status: this.status,
statusText: xhr.statusText
});
}
};
xhr.onerror = function () {
reject({
status: this.status,
statusText: xhr.statusText
});
};
xhr.send();
});
}
PAPAYA_BUILD_NUM = "1594";
("use strict");
papaya.data.Atlas.boundaryData = papaya.data.Atlas.boundaryData || {}
var binaryMapper = binaryMapper || {}
papaya.data.Atlases = papaya.data.Atlases || {};
papaya.data.Atlases["vPaxinos"] = {
labels: {
atlas: {
data: {
label: [
{ index: 0, content: ": :background:" },
{ index: 1, content: ": :A1/A2 : areas 1 and 2 of cortex" },
{ index: 2, content: ": :A10 : area 10 of cortex" },
{ index: 3, content: ": :A11 : area 11 of cortex" },
{ index: 4, content: ": :A13L : area 13 of cortex lateral part" },
{ index: 5, content: ": :A13M : area 13 of cortex medial part" },
{ index: 6, content: ": :A13a : area 13a of cortex" },
{ index: 7, content: ": :A13b : area 13b of cortex" },
{ index: 8, content: ": :A14C : area 14 of cortex caudal part" },
{ index: 9, content: ": :A14R : area 14 of cortex rostral part" },
{
index: 10,
content: ": :A19DI : area 19 of cortex dorsointermediate part",
},
{ index: 11, content: ": :A19M : area 19 of cortex medial part" },
{ index: 12, content: ": :A23V : area 23 of cortex ventral part" },
{ index: 13, content: ": :A23a : area 23a of cortex" },
{ index: 14, content: ": :A23b : area 23b of cortex" },
{ index: 15, content: ": :A23c : area 23c of cortex" },
{ index: 16, content: ": :A24a : area 24a of cortex" },
{ index: 17, content: ": :A24b : area 24b of cortex" },
{ index: 18, content: ": :A24c : area 24c of cortex" },
{ index: 19, content: ": :A24d : area 24d of cortex" },
{ index: 20, content: ": :A25 : area 25 of cortex" },
{ index: 21, content: ": :A29a-c : area 29a-c of cortex" },
{ index: 22, content: ": :A29d : area 29d of cortex" },
{ index: 23, content: ": :A30 : area 30 of cortex" },
{ index: 24, content: ": :A31 : area 31 of cortex" },
{ index: 25, content: ": :A32 : area 32 of cortex" },
{ index: 26, content: ": :A32V : area 32 of cortex ventral part" },
{ index: 27, content: ": :A35 : area 35 of cortex" },
{ index: 28, content: ": :A36 : area 36 of cortex" },
{ index: 29, content: ": :A3a : area 3a of cortex (somatosensory)" },
{ index: 30, content: ": :A3b : area 3b of cortex (somatosensory)" },
{ index: 31, content: ": :A45 : area 45 of cortex" },
{ index: 32, content: ": :A46D : area 46 of cortex dorsal part" },
{ index: 33, content: ": :A46V : area 46 of cortex ventral part" },
{
index: 34,
content: ": :A47L : area 47 (old 12) of cortex lateral part",
},
{
index: 35,
content: ": :A47M : area 47 (old 12) of cortex medial part",
},
{
index: 36,
content: ": :A47O : area 47 (old 12) of cortex orbital part",
},
{
index: 37,
content: ": :A4ab : area 4 of cortex parts a and b (primary motor)",
},
{
index: 38,
content: ": :A4c : area 4 of cortex part c (primary motor)",
},
{ index: 39, content: ": :A6DC : area 6 of cortex dorsocaudal part" },
{ index: 40, content: ": :A6DR : area 6 of cortex dorsorostral part" },
{
index: 41,
content:
": :A6M : area 6 of cortex medial (supplementary motor) part",
},
{ index: 42, content: ": :A6Va : area 6 of cortex ventral part a" },
{ index: 43, content: ": :A6Vb : area 6 of cortex ventral part b" },
{ index: 44, content: ": :A8C : area 8 of cortex caudal part" },
{ index: 45, content: ": :A8aD : area 8a of cortex dorsal part" },
{ index: 46, content: ": :A8Av : area 8a of cortex ventral par" },
{ index: 47, content: ": :A8b : area 8b of cortex" },
{ index: 48, content: ": :A9 : area 9 of cortex" },
{ index: 49, content: ": :n.a. : dummy ROI" },
{ index: 50, content: ": :AI : agranular insular cortex" },
{
index: 51,
content: ": :AIP : anterior intraparietal area of cortex",
},
{ index: 52, content: ": :Apri : amygdalopiriform transition area" },
{ index: 53, content: ": :n.a. : dummy ROI" },
{ index: 54, content: ": :AuA1 : auditory cortex primary area" },
{ index: 55, content: ": :AuAL : auditory cortex anterolateral area" },
{ index: 56, content: ": :AuCL : auditory cortex caudolateral area" },
{ index: 57, content: ": :AuCM : auditory cortex caudomedial area" },
{
index: 58,
content: ": :AuCPB : auditory cortex caudal parabelt area",
},
{ index: 59, content: ": :AuML : auditory cortex middle lateral area" },
{ index: 60, content: ": :AuR : auditory cortex rostral area" },
{ index: 61, content: ": :AuRM : auditory cortex rostromedial area" },
{ index: 62, content: ": :AuRPB : auditory cortex rostral parabelt" },
{ index: 63, content: ": :AuRT : auditory cortex rostrotemporal" },
{
index: 64,
content: ": :AuRTL : auditory cortex rostrotemporal lateral area",
},
{
index: 65,
content: ": :AuRTM : auditory cortex rostrotemporal medial area",
},
{ index: 66, content: ": :n.a. : dummy ROI" },
{ index: 67, content: ": :DI : dysgranular insular cortex" },
{ index: 68, content: ": :n.a. : dummy ROI" },
{ index: 69, content: ": :n.a. : dummy ROI" },
{ index: 70, content: ": :Ent : entorhinal cortex" },
{
index: 71,
content: ": :FST : fundus of superior temporal sulcus area of cortex",
},
{ index: 72, content: ": :GI : granular insular cortex" },
{ index: 73, content: ": :Gu : gustatory cortex" },
{ index: 74, content: ": :n.a. : dummy ROI" },
{ index: 75, content: ": :Ipro : insular proisocortex" },
{ index: 76, content: ": :LIP : lateral intraparietal area of cortex" },
{ index: 77, content: ": :n.a. : dummy ROI" },
{ index: 78, content: ": :n.a. : dummy ROI" },
{ index: 79, content: ": :MIP : medial intraparietal area of cortex" },
{ index: 80, content: ": :n.a. : dummy ROI" },
{
index: 81,
content: ": :MST : medial superior temporal area of cortex",
},
{ index: 82, content: ": :n.a. : dummy ROI" },
{ index: 83, content: ": :OPAl : orbital periallocortex" },
{ index: 84, content: ": :OPro : orbital proisocortex" },
{
index: 85,
content: ": :OPt : occipito-parietal transitional area of cortex",
},
{ index: 86, content: ": :n.a. : dummy ROI" },
{ index: 87, content: ": :PE : parietal area PE" },
{ index: 88, content: ": :PEC : parietal area PE caudal part" },
{ index: 89, content: ": :PF : parietal area PF (cortex)" },
{ index: 90, content: ": :PFG : parietal area PFG (cortex)" },
{ index: 91, content: ": :PG : parietal area PG" },
{
index: 92,
content: ": :PGM : parietal area PG medial part (cortex)",
},
{
index: 93,
content:
": :IPa : parietal areas PGa and IPa (fundus of superior temporal ventral area) PGa -",
},
{ index: 94, content: ": :n.a. : dummy ROI" },
{ index: 95, content: ": :n.a. : dummy ROI" },
{ index: 96, content: ": :PaIL : parainsular cortex lateral part" },
{ index: 97, content: ": :PaIM : parainsular cortex medial part" },
{ index: 98, content: ": :n.a. : dummy ROI" },
{ index: 99, content: ": :n.a. : dummy ROI" },
{ index: 100, content: ": :Pir : piriform cortex" },
{ index: 101, content: ": :n.a. : dummy ROI" },
{ index: 102, content: ": :n.a. : dummy ROI" },
{
index: 103,
content:
": :ProM : proisocortical motor region (precentral opercular cortex)",
},
{ index: 104, content: ": :ProSt : prostriate area" },
{ index: 105, content: ": :ReI : retroinsular area (cortex)" },
{
index: 106,
content: ": :S2E : secondary somatosensory cortex external part",
},
{
index: 107,
content: ": :S2I : secondary somatosensory cortex internal part",
},
{
index: 108,
content:
": :S2PR : secondary somatosensory cortex parietal rostral area",
},
{
index: 109,
content:
": :S2PV : secondary somatosensory cortex parietal ventral area",
},
{ index: 110, content: ": :n.a. : dummy ROI" },
{
index: 111,
content: ": :STR : superior temporal rostral area (cortex)",
},
{
index: 112,
content: ": :TE1 : temporal area TE1 (inferior temporal cortex)",
},
{
index: 113,
content: ": :TE2 : temporal area TE2 (inferior temporal cortex)",
},
{
index: 114,
content: ": :TE3 : temporal area TE3 (inferior temporal cortex)",
},
{ index: 115, content: ": :TEO : temporal area TE occipital part" },
{ index: 116, content: ": :TF : temporal area TF" },
{ index: 117, content: ": :TFO : temporal area TF occipital part" },
{ index: 118, content: ": :TH : temporal area TH" },
{ index: 119, content: ": :TL : temporal area TL" },
{ index: 120, content: ": :TLO : temporal area TL occipital part" },
{
index: 121,
content:
": :TPO : temporo-parieto-occipital association area (superior temporal polysensory cortex)",
},
{ index: 122, content: ": :TPPro : temporopolar proisocortex" },
{ index: 123, content: ": :Tpro : temporal proisocortex" },
{ index: 124, content: ": :TPt : temporoparietal transitional area" },
{ index: 125, content: ": :n.a. : dummy ROI" },
{ index: 126, content: ": :V1 : primary visual cortex" },
{ index: 127, content: ": :V2 : visual area 2" },
{
index: 128,
content: ": :V3 : visual area 3 (ventrolateral posterior area)",
},
{ index: 129, content: ": :V3A : visual area 3A (dorsoanterior area)" },
{
index: 130,
content: ": :V4 : visual area 4 (ventrolatereral anterior area)",
},
{
index: 131,
content:
": :V4T : visual area 4 transitional part (middle temporal crescent)",
},
{ index: 132, content: ": :V5 : visual area 5 (middle temporal area)" },
{ index: 133, content: ": :V6 : visual area 6 (dorsomedial area)" },
{
index: 134,
content: ": :V6A : visual area 6A (posterior parietal medial area)",
},
{
index: 135,
content: ": :VIP : ventral intraparietal area of cortex",
},
{ index: 136, content: ": :n.a. : dummy ROI" },
{ index: 137, content: ": :n.a. : dummy ROI" },
{ index: 138, content: ": :n.a. : dummy ROI" },
{ index: 139, content: ": :n.a. : dummy ROI" },
{ index: 151, content: "HipF" },
{ index: 152, content: "Amy" },
{ index: 153, content: "Thal" },
{ index: 154, content: "ZI" },
{ index: 155, content: "Sth" },
{ index: 156, content: "MGN" },
{ index: 157, content: "LGN" },
{ index: 158, content: "Cd" },
{ index: 159, content: "Pu" },
{ index: 160, content: "Acb" },
{ index: 161, content: "Cl" },
{ index: 162, content: "Hypo" },
{ index: 163, content: "Sep" },
{ index: 164, content: "GP" },
{ index: 165, content: "IC" },
{ index: 166, content: "SC" },
{ index: 167, content: "SNR" },
{ index: 168, content: "PAG" },
{ index: 169, content: "HB" },
{ index: 170, content: "CeB" },
{ index: 151, content: ": :HipF : Hippocampalformation" },
{ index: 152, content: ": :Amy : Amygdala" },
{ index: 153, content: ": :Thal : Thalamus" },
{ index: 154, content: ": :ZI : Zonaincerta" },
{ index: 155, content: ": :Sth : Subthalamus" },
{ index: 156, content: ": :MGN : Medialgeniculatenucleus" },
{ index: 157, content: ": :LGN : Lateralgeniculatenucleus" },
{ index: 158, content: ": :Cd : Caudate" },
{ index: 159, content: ": :Pu : Putamen" },
{ index: 160, content: ": :Acb : Acumbens" },
{ index: 161, content: ": :Cl : Claustrumandendopirformclaustrum" },
{ index: 162, content: ": :Hypo : Hypothalamus" },
{ index: 163, content: ": :Sep : Septum" },
{ index: 164, content: ": :GP : Globuspallidus" },
{ index: 165, content: ": :IC : Inferiorcolliculus" },
{ index: 166, content: ": :SC : Superiorcolliculus" },
{ index: 167, content: ": :SNR : Substantianigra" },
{ index: 168, content: ": :PAG : Periaqueductalgray" },
{ index: 169, content: ": :HB : habenularnuclei" },
{ index: 170, content: ": :CeB : Cerebellum" },
],
},
header: {
images: {
summaryimagefile: "atlas_MBM_cortex_vPaxinos_both_same"
},
name: "Atlas V3 cortex Paxinos",
type: "Label",
// images: {
// summaryimagefile: "atlas_MBM_cortex_vPaxinos_and_subcortical",
// },
// display: "*.*",
// name: "Paxinos Atlas",
// type: "Label"
},
version: 2,
},
},
boundaryData: {
mapper: binaryMapper,
range: {
min: 0,
max: 0,
alpha: 0.3
},
boundarysurfacefile: 'Paxinos Surface Boundaries',
data: null,
}
};
const cerb_labels = {
lobe1_17: [
{index: 0,content:": :background:" },
{index: 1,content:": :I : Lingula I" },
{index: 2,content:": :II : Central lobule II" },
{index: 3,content:": :III : Culmen III" },
{index: 4,content:": :IV : Declive IV" },
{index: 5,content:": :V : lobule V" },
{index: 6,content:": :VI : Folium VI" },
{index: 7,content:": :VII : Tuber VII" },
{index: 8,content:": :VIII : LPyramid VIII" },
{index: 9,content:": :IX : Uvula IX" },
{index: 10,content:": :X : Nodulus X" },
{index: 11,content:": :FL : Flocculus" },
{index: 12,content:": :COP : Copula" },
{index: 13,content:": :PAR : Paramedian lobule" },
{index: 14,content:": :SIM : Simplex lobule" },
{index: 15,content:": :Crus I : Crus I" },
{index: 16,content:": :Crus II : Crus II" },
{index: 17,content:": :PFL : Paraflocculus" },
{index: 18,content:": :FN : fastigial nucleus " },
{index: 19,content:": :IN : interpositus nucleus" },
{index: 20,content:": :DN : dentate nucleus" }
],
lobe1_13: [
{index: 0,content:": :background:" },
{index: 1,content:": :I-IV : Lingula I and Central lobule II and Culmen III and Declive IV" },
{index: 5,content:": :V : lobule V" },
{index: 6,content:": :VI : Folium VI" },
{index: 7,content:": :VII : Tuber VII" },
{index: 8,content:": :VIII : LPyramid VIII" },
{index: 9,content:": :IX-X : Uvula IX and Nodulus X" },
{index: 11,content:": :FL : Flocculus" },
{index: 12,content:": :COP : Copula" },
{index: 13,content:": :PAR : Paramedian lobule" },
{index: 14,content:": :SIM : Simplex lobule" },
{index: 15,content:": :Crus I : Crus I" },
{index: 16,content:": :Crus II : Crus II" },
{index: 17,content:": :PFL : Paraflocculus" },
{index: 18,content:": :FN : fastigial nucleus " },
{index: 19,content:": :IN : interpositus nucleus" },
{index: 20,content:": :DN : dentate nucleus" }
]
}
papaya.data.Atlases["v4"] = {
labels: {
atlas: {
data: {
label: [
{ index: 0, content: ": :background :" }, { index: 1, content: ": :1-ACC : anterior cingulate cortex" }, { index: 2, content: ": :2-MedV1 : medial primary visual MT-MST" }, { index: 3, content: ": :3-HighVisC : high-level 3" }, { index: 4, content: ": :4-ACC : anterior cingulate cortex" }, { index: 5, content: ": :5-MedV1 : medial primary visual MT-MST" }, { index: 6, content: ": :6-LatV1 : lateral primary visual MT-MST" }, { index: 7, content: ": :7-MedV1 : medial primary visual MT-MST" },
{ index: 8, content: ": :8-MedV1 : medial primary visual MT-MST" }, { index: 9, content: ": :9-HighVisA : high-level 1" }, { index: 10, content: ": :10-DorSoma : dorsal somatomotor" }, { index: 11, content: ": :11-OFC : orbital frontal" }, { index: 12, content: ": :12-ACC : anterior cingulate cortex" }, { index: 13, content: ": :13-HighVisB : high-level 2" }, { index: 14, content: ": :14-MedV1 : medial primary visual MT-MST" }, { index: 15, content: ": :15-LatV1 : lateral primary visual MT-MST" }, { index: 16, content: ": :16-MedV1 : medial primary visual MT-MST" },
{ index: 17, content: ": :17-MedV1 : medial primary visual MT-MST" }, { index: 18, content: ": :18-FPN : frontoparietal-like network" }, { index: 19, content: ": :19-AudIns : auditory and insular cortex" }, { index: 20, content: ": :20-LatV1 : lateral primary visual MT-MST" }, { index: 21, content: ": :21-FPN : frontoparietal-like network" }, { index: 22, content: ": :22-ParapHipp : the parahippocampus/temporal pole" }, { index: 23, content: ": :23-ParapHipp : the parahippocampus/temporal pole" }, { index: 24, content: ": :24-ParapHipp : the parahippocampus/temporal pole" },
{ index: 25, content: ": :25-HighVisB : high-level 2" }, { index: 26, content: ": :26-HighVisC : high-level 3" }, { index: 27, content: ": :27-ForPole : frontal pole" }, { index: 28, content: ": :28-DorSoma : dorsal somatomotor" }, { index: 29, content: ": :29-DorSoma : dorsal somatomotor" }, { index: 30, content: ": :30-FPN : frontoparietal-like network" }, { index: 31, content: ": :31-ForPole : frontal pole" }, { index: 32, content: ": :32-OFC : orbital frontal" }, { index: 33, content: ": :33-AudIns : auditory and insular cortex" }, { index: 34, content: ": :34-Premotor : premotor" },
{ index: 35, content: ": :35-FPN : frontoparietal-like network" }, { index: 36, content: ": :36-ParapHipp : the parahippocampus/temporal pole" }, { index: 37, content: ": :37-VenSoma : ventral somatomotor" }, { index: 38, content: ": :38-ForPole : frontal pole" }, { index: 39, content: ": :39-DorSoma : dorsal somatomotor" }, { index: 40, content: ": :40-DMN : default-mode-like network" }, { index: 41, content: ": :41-ParapHipp : the parahippocampus/temporal pole" }, { index: 42, content: ": :42-FPN : frontoparietal-like network" }, { index: 43, content: ": :43-MedV1 : medial primary visual MT-MST" },
{ index: 44, content: ": :44-OFC : orbital frontal" }, { index: 45, content: ": :45-Premotor : premotor" }, { index: 46, content: ": :46-AudIns : auditory and insular cortex" }, { index: 47, content: ": :47-ForPole : frontal pole" }, { index: 48, content: ": :48-HighVisA : high-level 1" }, { index: 49, content: ": :49-HighVisB : high-level 2" }, { index: 50, content: ": :50-HighVisC : high-level 3" }, { index: 51, content: ": :51-HighVisC : high-level 3" }, { index: 52, content: ": :52-ParapHipp : the parahippocampus/temporal pole" }, { index: 53, content: ": :53-ParapHipp : the parahippocampus/temporal pole" },
{ index: 54, content: ": :54-ParapHipp : the parahippocampus/temporal pole" }, { index: 55, content: ": :55-HighVisB : high-level 2" }, { index: 56, content: ": :56-ParapHipp : the parahippocampus/temporal pole" }, { index: 57, content: ": :57-OFC : orbital frontal" }, { index: 58, content: ": :58-FPN : frontoparietal-like network" }, { index: 59, content: ": :59-AudIns : auditory and insular cortex" }, { index: 60, content: ": :60-OFC : orbital frontal" }, { index: 61, content: ": :61-VenSoma : ventral somatomotor" }, { index: 62, content: ": :62-DMN : default-mode-like network" },
{ index: 63, content: ": :63-AudIns : auditory and insular cortex" }, { index: 64, content: ": :64-VenSoma : ventral somatomotor" }, { index: 65, content: ": :65-MedV1 : medial primary visual MT-MST" }, { index: 66, content: ": :66-Premotor : premotor" }, { index: 67, content: ": :67-FPN : frontoparietal-like network" }, { index: 68, content: ": :68-ParapHipp : the parahippocampus/temporal pole" }, { index: 69, content: ": :69-DMN : default-mode-like network" }, { index: 70, content: ": :70-LatV1 : lateral primary visual MT-MST" }, {
index: 71,
content: ": :71-ACC : anterior cingulate cortex"
}, { index: 72, content: ": :72-Premotor : premotor" }, { index: 73, content: ": :73-FPN : frontoparietal-like network" }, { index: 74, content: ": :74-DMN : default-mode-like network" }, { index: 75, content: ": :75-DMN : default-mode-like network" }, { index: 76, content: ": :76-ACC : anterior cingulate cortex" }, { index: 77, content: ": :77-MedV1 : medial primary visual MT-MST" }, { index: 78, content: ": :78-ParapHipp : the parahippocampus/temporal pole" }, { index: 79, content: ": :79-AudIns : auditory and insular cortex" },
{ index: 80, content: ": :80-MedV1 : medial primary visual MT-MST" }, { index: 81, content: ": :81-HighVisC : high-level 3" }, { index: 82, content: ": :82-HighVisB : high-level 2" }, { index: 83, content: ": :83-AudIns : auditory and insular cortex" }, { index: 84, content: ": :84-MedV1 : medial primary visual MT-MST" }, { index: 85, content: ": :85-HighVisB : high-level 2" }, { index: 86, content: ": :86-HighVisA : high-level 1" }, { index: 87, content: ": :87-DMN : default-mode-like network" }, { index: 88, content: ": :88-ACC : anterior cingulate cortex" },
{ index: 89, content: ": :89-DMN : default-mode-like network" }, { index: 90, content: ": :90-HighVisA : high-level 1" }, { index: 91, content: ": :91-OFC : orbital frontal" }, { index: 92, content: ": :92-DorSoma : dorsal somatomotor" }, { index: 93, content: ": :93-OFC : orbital frontal" }, { index: 94, content: ": :94-OFC : orbital frontal" }, { index: 95, content: ": :95-HighVisC : high-level 3" }, { index: 96, content: ": :96-HighVisA : high-level 1" }, { index: 151, content: ": :HipF : Hippocampalformation" }, { index: 152, content: ": :Amy : Amygdala" },
{ index: 153, content: ": :Thal : Thalamus" }, { index: 154, content: ": :ZI : Zonaincerta" }, { index: 155, content: ": :Sth : Subthalamus" }, { index: 156, content: ": :MGN : Medialgeniculatenucleus" }, { index: 157, content: ": :LGN : Lateralgeniculatenucleus" }, { index: 158, content: ": :Cd : Caudate" }, { index: 159, content: ": :Pu : Putamen" }, { index: 160, content: ": :Acb : Acumbens" }, { index: 161, content: ": :Cl : Claustrumandendopirformclaustrum" }, { index: 162, content: ": :Hypo : Hypothalamus" }, { index: 163, content: ": :Sep : Septum" }, {
index: 164,
content: ": :GP : Globuspallidus"
}, { index: 165, content: ": :IC : Inferiorcolliculus" }, { index: 166, content: ": :SC : Superiorcolliculus" }, { index: 167, content: ": :SNR : Substantianigra" }, { index: 168, content: ": :PAG : Periaqueductalgray" }, { index: 169, content: ": :HB : habenularnuclei" }, { index: 170, content: ": :CeB : Cerebellum" },
{ index: 101, content: "VenSoma:ventral somatomotor" },
{ index: 102, content: "DorSoma:dorsal somatomotor" },
{ index: 103, content: "ForPole:frontal pole" },
{ index: 104, content: "ParapHipp:the parahippocampus/temporal pole" },
{ index: 105, content: "OFC:orbital frontal" },
{ index: 106, content: "AudIns:salience-related auditory and insular " },
{ index: 107, content: "FPN:frontoparietal-like network" },
{ index: 108, content: "DMN:default-mode-like network" },
{ index: 109, content: "MedV1: visual-related MedV1" },
{ index: 110, content: "LatV1: visual-related LatV1" },
{ index: 111, content: "HighVisA:visual-related high-level A" },
{ index: 112, content: "HighVisB:visual-related high-level B" },
{ index: 113, content: "HighVisC:visual-related high-level C" },
{ index: 114, content: "ACC:salience-related anterior cingulate cortex " },
{ index: 115, content: "Premotor:premotor" },
]
},
header: {
images: { summaryimagefile: "v4_atlas" },
name: "Atlas V4 cortex FC",
type: "Label"
},
version: 2
}
},
boundaryData: {
mapper: binaryMapper,
range: {
min: 0,
max: 96,
alpha: 0.3
},
boundarysurfacefile: 'v4_surface_boundaries',
data: null,
}
}
papaya.data.Atlases['vH'] = {
labels: {
atlas: {
data: {
label: [{ index: 0, content: ": :background :" }, { index: 1, content: ": :A10 : Area10" }, { index: 2, content: ": :A9 : Area9" }, { index: 3, content: ": :A46 : Area46" }, { index: 4, content: ": :8a : Area8a" }, { index: 5, content: ": :8b : Area8b" }, { index: 6, content: ": :A47L : Area47lateral" }, { index: 7, content: ": :A47M : Area47medial" }, { index: 8, content: ": :A45 : Area45" }, { index: 9, content: ": :ProM : Proisocorticalmotorregion(precentralopercularcortex)" }, { index: 10, content: ": :A32V : Area32ventral" },
{ index: 11, content: ": :A32D : Area32dorsal" }, { index: 12, content: ": :A14 : Area14" }, { index: 13, content: ": :A24a : Area24a" }, { index: 14, content: ": :A24b : Area24b" }, { index: 15, content: ": :A24cd : Area24cd" }, { index: 16, content: ": :A25 : Area25" }, { index: 17, content: ": :A11L : Area11lateral" }, { index: 18, content: ": :A11M : Area11medial" }, { index: 19, content: ": :A13L : Area13lateral" }, { index: 20, content: ": :A13M : Area13medial" }, { index: 21, content: ": :Gu : Gustatorycortex" }, { index: 22, content: ": :Opro : Orbitalproisocortex" },
{ index: 23, content: ": :OPAl : Orbitalpreiallocortex" }, { index: 24, content: ": :A6D : Area6dorsal" }, { index: 25, content: ": :A6M : Area6medial" }, { index: 26, content: ": :A6V : Areaventral" }, { index: 27, content: ": :A4M : Area4medal" }, { index: 28, content: ": :A4L : Area4lateral" }, { index: 29, content: ": :S1M : Primarysomatosensorymedial" }, { index: 30, content: ": :S1D : Primarysomatosensorydorsal" }, { index: 31, content: ": :S1V : Primarysomatosensoryventral" }, { index: 32, content: ": :S2a : Secondarysomatosensoryareaa" }, {
index: 33,
content: ": :S2b : Secondarysomatosensoryareab"
}, { index: 34, content: ": :Core : Auditorycorearea" }, { index: 35, content: ": :BeltM : Auditorybeltareamedial" }, { index: 36, content: ": :BeltL : Auditorybeltarealateral" }, { index: 37, content: ": :PBR : Auditoryparabeltarearostral" }, { index: 38, content: ": :PBC : Auditoryparabeltareacaudal" }, { index: 39, content: ": :STR : Superiortemporalrostralarea" }, { index: 40, content: ": :AI : Argranularinsularcortex" }, { index: 41, content: ": :DI : Dysgranularinsularcortex" }, { index: 42, content: ": :GI : Granularinsularcortex" },
{ index: 43, content: ": :ReI : Retroinsulararea" }, { index: 44, content: ": :PaIR : Parainsularcortexrostral" }, { index: 45, content: ": :PaIC : Parainsularcortexcaudal" }, { index: 46, content: ": :Tpt : Temporoparietaltransitionalarea" }, { index: 47, content: ": :TPOR : Temporo-parito-occipitalassociationarearostral" }, { index: 48, content: ": :TPOC : Temporo-parito-occipitalassociationareacaudal" }, { index: 49, content: ": :FSTR : Fundusofsuperiortemproalarearostral" }, { index: 50, content: ": :FSTC : Fundusofsuperiortemproalareacaudal" },
{ index: 51, content: ": :TEa : Interiortemporalareaa" }, { index: 52, content: ": :TEb : Interiortemporalareab" }, { index: 53, content: ": :TEc : Interiortemporalareac" }, { index: 54, content: ": :TEd : Interiortemporalaread" }, { index: 55, content: ": :TEe : Interiortemporalareae" }, { index: 56, content: ": :TEf : Interiortemporalareaf" }, { index: 57, content: ": :TPPro : Temporopolarproisocortex" }, { index: 58, content: ": :PrhR : Perihinalcortexrostral" }, { index: 59, content: ": :PrhC : Perihinalcortexcaudal" }, { index: 60, content: ": :Enta : Entorhinalcortexa" },
{ index: 61, content: ": :Entb : Entorhinalcortexb" }, { index: 62, content: ": :PHGa : Parahippocampalcomplexa" }, { index: 63, content: ": :PHGb : Parahippocampalcomplexb" }, { index: 64, content: ": :PHGc : Parahippocampalcomplexc" }, { index: 65, content: ": :Pri : Piriform" }, { index: 66, content: ": :SB : Subiculum" }, { index: 67, content: ": :PEa : ParietalareaPEa" }, { index: 68, content: ": :PEb : ParietalareaPEb" }, { index: 69, content: ": :PF/PFGa : ParietalareaPF/PFGa" }, { index: 70, content: ": :PF/PFGb : ParietalareaPF/PFGb" }, {
index: 71,
content: ": :PGa : ParietalareaPGa"
}, { index: 72, content: ": :PGb : ParietalareaPGa" }, { index: 73, content: ": :Opta : Occipito-parietaltranslationalareaa" }, { index: 74, content: ": :Optb : Occipito-parietaltranslationalareab" }, { index: 75, content: ": :IPa : Intraparietalareaa" }, { index: 76, content: ": :IPb : Intraparietalareab" }, { index: 77, content: ": :IPc : Intraparietalareac" }, { index: 78, content: ": :IPd : Intraparietalaread" }, { index: 79, content: ": :A23a : Area23a" }, { index: 80, content: ": :A23b : Area23b" }, { index: 81, content: ": :A23V : Area23ventral" },
{ index: 82, content: ": :A29M : Area29medial" }, { index: 83, content: ": :A30 : Area30" }, { index: 84, content: ": :A29V : Area29ventral" }, { index: 85, content: ": :A31 : Area31" }, { index: 86, content: ": :PGMa : Parietalareamediala" }, { index: 87, content: ": :PGMb : Parietalareamedialb" }, { index: 88, content: ": :ProSt : Prostriatearea" }, { index: 89, content: ": :V1a : VisualareaV1a" }, { index: 90, content: ": :V1b : VisualareaV1b" }, { index: 91, content: ": :V2M : VisualareaV2medial" }, { index: 92, content: ": :V2L : VisualareaV2lateral" }, {
index: 93,
content: ": :V2V : VisualareaV2ventral"
}, { index: 94, content: ": :V3D : VisualareaV3dorsal" }, { index: 95, content: ": :V3L : VisualareaV3lateral" }, { index: 96, content: ": :V3V : VisualareaV3ventral" }, { index: 97, content: ": :V4L : VisualareaV4lateral" }, { index: 98, content: ": :V4V : VisualareaV4ventral" }, { index: 99, content: ": :V5R : VisualareaV5rostral" }, { index: 100, content: ": :V5C : VisualareaV5caudal" }, { index: 101, content: ": :V6R : VisualareaV6rostral" }, { index: 102, content: ": :V6M : VisualareaV6medial" }, {
index: 103,
content: ": :V6D : VisualareaV6dorsal"
}, { index: 104, content: ": :A19DI : Area19dorsointermediatepart" }, { index: 105, content: ": :A19M : A19medialpart" }, { index: 106, content: ": :MST : Medialsuperiortemporalarea" }, { index: 151, content: ": :HipF : Hippocampalformation" }, { index: 152, content: ": :Amy : Amygdala" }, { index: 153, content: ": :Thal : Thalamus" }, { index: 154, content: ": :ZI : Zonaincerta" }, { index: 155, content: ": :Sth : Subthalamus" }, { index: 156, content: ": :MGN : Medialgeniculatenucleus" }, { index: 157, content: ": :LGN : Lateralgeniculatenucleus" },
{ index: 158, content: ": :Cd : Caudate" }, { index: 159, content: ": :Pu : Putamen" }, { index: 160, content: ": :Acb : Acumbens" }, { index: 161, content: ": :Cl : Claustrumandendopirformclaustrum" }, { index: 162, content: ": :Hypo : Hypothalamus" }, { index: 163, content: ": :Sep : Septum" }, { index: 164, content: ": :GP : Globuspallidus" }, { index: 165, content: ": :IC : Inferiorcolliculus" }, { index: 166, content: ": :SC : Superiorcolliculus" }, { index: 167, content: ": :SNR : Substantianigra" }, { index: 168, content: ": :PAG : Periaqueductalgray" },
{ index: 169, content: ": :HB : habenularnuclei" }, { index: 170, content: ": :CeB : Cerebellum" }]
},
header: {
images: { summaryimagefile: "vH_atlas" },
name: "Atlas V3 cortex vH",
type: "Label"
}, version: 2
}
},
boundaryData: {
mapper: function () { console.log(arguments) },
range: {
min: 0,
max: 0,
alpha: 0.3
},
boundarysurfacefile: 'vH_surface_boundaries',
data: null,
}
}
papaya.data.Atlases['vNetwork'] = {
labels: {
atlas: {
data: {
label: [
{ index: 1, content: "VenSoma:ventral somatomotor" },
{ index: 2, content: "DorSoma:dorsal somatomotor" },
{ index: 3, content: "ForPole:frontal pole" },
{ index: 4, content: "ParapHipp:the parahippocampus/temporal pole" },
{ index: 5, content: "OFC:orbital frontal" },
{ index: 6, content: "AudIns:salience-related auditory and insular " },
{ index: 7, content: "FPN:frontoparietal-like network" },
{ index: 8, content: "DMN:default-mode-like network" },
{ index: 9, content: "MedV1: visual-related MedV1" },
{ index: 10, content: "LatV1: visual-related LatV1" },
{ index: 11, content: "HighVisA:visual-related high-level A" },
{ index: 12, content: "HighVisB:visual-related high-level B" },
{ index: 13, content: "HighVisC:visual-related high-level C" },
{ index: 14, content: "ACC:salience-related anterior cingulate cortex " },
{ index: 15, content: "Premotor:premotor" },
]
},
header: {
images: { summaryimagefile: "v4_network" },
name: "Atlas V4 networks parcellation",
type: "Label"
}, version: 2
}
},
boundaryData: {
mapper: binaryMapper,
range: {
min: 0,
max: 0,
alpha: 0.3
},
// boundaryimagefile: 'Paxinos Boundaries',
boundarysurfacefile: 'vNetwork_surface_boundaries',
data: null,
}
}
papaya.data.Atlases['v2_H'] = {
labels: {
atlas: {
data: {
label: [{ index: 1, content: "cc[corpus_callosum]: : :" }, { index: 2, content: "fminor-p[forceps_minor]: : :" }, { index: 3, content: "fmajor-p[forceps_major]: : :" }, { index: 4, content: "tap-p[tapetum]: : :" }, { index: 5, content: "finfer[inferior_forceps]: : :" }, { index: 6, content: "ac[anterior_commissure]: : :" }, { index: 7, content: "pc[posterior_commissure]: : :" }, { index: 8, content: "csc[commissure_of_superior_colliculus]: : :" }, { index: 9, content: "cic[commissure_of_inferior_colliculus]: : :" },
{ index: 10, content: "hbc[habenular_commissure]: : :" }, { index: 11, content: "ica[anterior_limb_of_internal_capsule]: : :" }, { index: 12, content: "icp[posterior_limb_of_internal_capsule]: : :" }, { index: 13, content: "cp[cerebral_peduncle]: : :" }, { index: 14, content: "lfp[longitudinal_pontine_fasciculus]: : :" }, { index: 15, content: "py[pyramidal_tract]: : :" }, { index: 16, content: "ec[external_capsule]: : :" }, { index: 17, content: "ex[extreme_capsule]: : :" }, { index: 18, content: "ilf[inferior_longitudinal_fasciculus]: : :" }, {
index: 19,
content: "slf[superior_longitudinal_fasciculus]: : :"
}, { index: 20, content: "mdlf-stg[middle_longitudinal_fasciculus_in_STG]: : :" }, { index: 21, content: "mdlf-ext[middle_longitudinal_fasciculus_from_STG_to_parietal]: : :" }, { index: 22, content: "aum[fibers_connect_auditory_cortex_with_MGN]: : :" }, { index: 23, content: "f[body_of_fornix]: : :" }, { index: 24, content: "f[body_of_fornix]: : :" }, { index: 25, content: "fi[fimbra]: : :" }, { index: 26, content: "fi[fimbra]:finfer[inferior_forceps]: : :" }, { index: 27, content: "vhc[ventral_hippocampal_commissure]: : :" },
{ index: 28, content: "fa[anterior_pillars_of_the_fornix]: : :" }, { index: 29, content: "alv[alveus]: : :" }, { index: 30, content: "alv[alveus]:tap-p[tapetum]: : :" }, { index: 31, content: "alv[alveus]:finfer[inferior_forceps]: : :" }, { index: 32, content: "af[fibers_around_amygdala]: : :" }, { index: 33, content: "af[fibers_around_amygdala]:ac[anterior_commissure]: : :" }, { index: 34, content: "unc[uncinate_fasciculus]: : :" }, { index: 35, content: "unc[uncinate_fasciculus]:ec[external_capsule]: : :" }, { index: 36, content: "unc[uncinate_fasciculus]:ex[extreme_capsule]: : :" },
{ index: 37, content: "pcg[parahippocampal_cingulum]: : :" }, { index: 38, content: "pcg[parahippocampal_cingulum]:finfer[inferior_forceps]: : :" }, { index: 39, content: "scg[superior_cinglulum]: : :" }, { index: 40, content: "scg[superior_cinglulum]:cc[corpus_callosum]: : :" }, { index: 41, content: "scg[superior_cinglulum]:fminor-p[forceps_minor]: : :" }, { index: 42, content: "scg[superior_cinglulum]:fmajor-p[forceps_major]: : :" }, { index: 43, content: "scg[superior_cinglulum]:tap-p[tapetum]: : :" }, { index: 44, content: "stb-p[parts_of_striatal_bundle]: : :" },
{ index: 45, content: "stb-p[parts_of_striatal_bundle]:ec[external_capsule]: : :" }, { index: 46, content: "iml[internal_medullary_lamina_of_thalamus]: : :" }, { index: 47, content: "eml[external_medullary_lamina_of_thalamus]: : :" }, { index: 48, content: "eml[external_medullary_lamina_of_thalamus]:icp[posterior_limb_of_internal_capsule]: : :" }, { index: 49, content: "eml[external_medullary_lamina_of_thalamus]:aum[fibers_connect_auditory_cortex_with_MGN]: : :" }, { index: 50, content: "lml[lateral_medullary_lamina_of_globus_pallidum]: : :" },
{ index: 51, content: "lml[lateral_medullary_lamina_of_globus_pallidum]:ica[anterior_limb_of_internal_capsule]: : :" }, { index: 52, content: "lml[lateral_medullary_lamina_of_globus_pallidum]:icp[posterior_limb_of_internal_capsule]: : :" }, { index: 53, content: "mml[medial_medullary_lamina_of_globus_pallidum]: : :" }, { index: 54, content: "h1[H1_thalamic_fasciculus]: : :" }, { index: 55, content: "h2[H2_lenticular_fasciculus]: : :" }, { index: 56, content: "mtt[mammillothalamic_tract]: : :" }, { index: 57, content: "st[stria_terminalis]: : :" },
{ index: 58, content: "sm[stria_medullaris]: : :" }, { index: 59, content: "hi[habenulointerpeduncular_tract]: : :" }, { index: 60, content: "mb[muratoff_bundle]: : :" }, { index: 61, content: "mb[muratoff_bundle]:tap-p[tapetum]: : :" }, { index: 62, content: "tfp[transverse_fibers_of_pons]: : :" }, { index: 63, content: "mcp[middle_cerebellar_peduncle]: : :" }, { index: 64, content: "icp[inferior_cerebellar_peduncle]: : :" }, { index: 65, content: "sp5[spinal_trigeminal_tract]: : :" }, { index: 66, content: "oc[olivocerebellar_tract]: : :" }, {
index: 67,
content: "scp[superior_cerebellar_peduncle]: : :"
}, { index: 68, content: "vsc[ventral_spinocerebellar_tract]: : :" }, { index: 69, content: "tz[trapezoid_body]: : :" }, { index: 70, content: "xscp[decussation_of_superior_cerebellar_peduncle]: : :" }, { index: 71, content: "mlf[medial_longitudinal_fasciculus]: : :" }, { index: 72, content: "ml[medial_lemniscus]: : :" }, { index: 73, content: "ll[lateral_lemniscus]: : :" }, { index: 74, content: "8n: : :" }, { index: 75, content: "5n: : :" }, { index: 76, content: "6n: : :" }, { index: 77, content: "7n: : :" },
{ index: 78, content: "bsc[branchium_of_superior_colliculus]: : :" }, { index: 79, content: "bic[branchium_of_inferior_colliculus]: : :" }, { index: 80, content: "sn[striatonigral_fibers]: : :" }, { index: 81, content: "sn[striatonigral_fibers]:icp[posterior_limb_of_internal_capsule]: : :" }, { index: 82, content: "puf[putamen_fibers]: : :" }, { index: 83, content: "ffc[fibers_in_frontal_pole]: : :" }, { index: 84, content: "ffc[fibers_in_frontal_pole]:fminor-p[forceps_minor]: : :" }, { index: 85, content: "cr[corona_radiata]: : :" }, {
index: 86,
content: "cr[corona_radiata]:cc[corpus_callosum]: : :"
}, { index: 87, content: "cr[corona_radiata]:fminor-p[forceps_minor]: : :" }, { index: 88, content: "cr[corona_radiata]:tap-p[tapetum]: : :" }, { index: 89, content: "cr[corona_radiata]:ica[anterior_limb_of_internal_capsule]: : :" }, { index: 90, content: "cr[corona_radiata]:icp[posterior_limb_of_internal_capsule]: : :" }, { index: 91, content: "cr[corona_radiata]:slf[superior_longitudinal_fasciculus]: : :" }, { index: 92, content: "cr[corona_radiata]:fof[occipitofrontal_fasciculus]: : :" },
{ index: 93, content: "cr[corona_radiata]:mdlf-ext[middle_longitudinal_fasciculus_from_STG_to_parietal]: : :" }, { index: 94, content: "cbwm[white_matter_of_cerebellum]: : :" }, { index: 95, content: "mls[medial_longitudinal_striae]:mls[medial_longitudinal_striae]: : :" }, { index: 96, content: "mls[medial_longitudinal_striae]:mls[medial_longitudinal_striae]: : :" }, { index: 97, content: "lls[lateral_longitudinal_striae]: : :" }, { index: 98, content: "lls[lateral_longitudinal_striae]:cc[corpus_callosum]: : :" }, { index: 99, content: "lls[lateral_longitudinal_striae]:fmajor-p[forceps_major]: : :" },
{ index: 100, content: "opt[optic_tract]: : :" }, { index: 101, content: "opt[optic_tract]:icp[posterior_limb_of_internal_capsule]: : :" }, { index: 102, content: "opt[optic_tract]:alv[alveus]: : :" }, { index: 103, content: "lgnf[white_matter_circumvent_LGN]: : :" }, { index: 104, content: "lgnf[white_matter_circumvent_LGN]:aum[fibers_connect_auditory_cortex_with_MGN]: : :" }, { index: 105, content: "lgnf[white_matter_circumvent_LGN]:fi[fimbra]: : :" }, { index: 106, content: "lgnf[white_matter_circumvent_LGN]:eml[external_medullary_lamina_of_thalamus]: : :" },
{ index: 107, content: "lgnf[white_matter_circumvent_LGN]:aum[fibers_connect_auditory_cortex_with_MGN]:eml[external_medullary_lamina_of_thalamus]: : :" }, { index: 108, content: "lgnf[white_matter_circumvent_LGN]:st[stria_terminalis]: : :" }, { index: 109, content: "lgnf[white_matter_circumvent_LGN]:sn[striatonigral_fibers]: : :" }, { index: 110, content: "ss[sagittal_stratum]: : :" }, { index: 111, content: "ss[sagittal_stratum]:fmajor-p[forceps_major]: : :" }, { index: 112, content: "ss[sagittal_stratum]:tap-p[tapetum]: : :" }, {
index: 113,
content: "ss[sagittal_stratum]:finfer[inferior_forceps]: : :"
}, { index: 114, content: "ss[sagittal_stratum]:icp[posterior_limb_of_internal_capsule]: : :" }, { index: 115, content: "ss[sagittal_stratum]:slf[superior_longitudinal_fasciculus]: : :" }, { index: 116, content: "ss[sagittal_stratum]:mdlf-stg[middle_longitudinal_fasciculus_in_STG]: : :" }, { index: 117, content: "ss[sagittal_stratum]:mdlf-ext[middle_longitudinal_fasciculus_from_STG_to_parietal]: : :" }, { index: 118, content: "ss[sagittal_stratum]:aum[fibers_connect_auditory_cortex_with_MGN]: : :" },
{ index: 119, content: "ss[sagittal_stratum]:alv[alveus]: : :" }, { index: 120, content: "ss[sagittal_stratum]:stb-p[parts_of_striatal_bundle]: : :" }, { index: 121, content: "ss[sagittal_stratum]:eml[external_medullary_lamina_of_thalamus]: : :" }, { index: 122, content: "ss[sagittal_stratum]:sn[striatonigral_fibers]: : :" }, { index: 123, content: "ss[sagittal_stratum]:cr[corona_radiata]: : :" }, { index: 124, content: "ss[sagittal_stratum]:slf[superior_longitudinal_fasciculus]: : :" }, { index: 125, content: "strk[stratum_calcarinum]: : :" },
{ index: 126, content: "strk[stratum_calcarinum]:fmajor-p[forceps_major]: : :" }, { index: 127, content: "strk[stratum_calcarinum]:tap-p[tapetum]: : :" }, { index: 128, content: "strk[stratum_calcarinum]:finfer[inferior_forceps]: : :" }, { index: 129, content: "strk[stratum_calcarinum]:pcg[parahippocampal_cingulum]: : :" }, { index: 130, content: "strk[stratum_calcarinum]:scg[superior_cinglulum]: : :" }, { index: 131, content: "ovf[occipital_vertical_fasciculus]: : :" }, { index: 132, content: "ovf[occipital_vertical_fasciculus]:ilf[inferior_longitudinal_fasciculus]: : :" },
{ index: 133, content: "ovf[occipital_vertical_fasciculus]:slf[superior_longitudinal_fasciculus]: : :" }, { index: 134, content: "ovf[occipital_vertical_fasciculus]:mdlf-stg[middle_longitudinal_fasciculus_in_STG]: : :" }, { index: 135, content: "ovf[occipital_vertical_fasciculus]:mdlf-ext[middle_longitudinal_fasciculus_from_STG_to_parietal]: : :" }, { index: 136, content: "ovf[occipital_vertical_fasciculus]:pcg[parahippocampal_cingulum]: : :" }, { index: 137, content: "ovf[occipital_vertical_fasciculus]:stb-p[parts_of_striatal_bundle]: : :" },
{ index: 138, content: "ovf[occipital_vertical_fasciculus]:cr[corona_radiata]: : :" }, { index: 139, content: "ovf[occipital_vertical_fasciculus]:slf[superior_longitudinal_fasciculus]: : :" }, { index: 140, content: "opv[occipital_pole_local_fibers_ventral]: : :" }, { index: 141, content: "opv[occipital_pole_local_fibers_ventral]:ilf[inferior_longitudinal_fasciculus]: : :" }, { index: 142, content: "opd[occipital_pole_local_fibers_dorsal]: : :" }, { index: 143, content: "scm[local_fibers_of_the_callosomarginal_sulcus]: : :" }, {
index: 144,
content: "scm[local_fibers_of_the_callosomarginal_sulcus]:fmajor-p[forceps_major]: : :"
}, { index: 145, content: "scm[local_fibers_of_the_callosomarginal_sulcus]:scg[superior_cinglulum]: : :" }, { index: 146, content: "sod[supraoptic_decussation]: : :" }, { index: 147, content: "cr[corona_radiata]: : :" }, { index: 148, content: "cr[corona_radiata]:cc[corpus_callosum]: : :" }, { index: 149, content: "cr[corona_radiata]:fminor-p[forceps_minor]: : :" }, { index: 150, content: "cr[corona_radiata]:scg[superior_cinglulum]: : :" }, {
index: 151,
content: "cr[corona_radiata]:cc[corpus_callosum]:scg[superior_cinglulum]: : :"
}, { index: 152, content: "cr[corona_radiata]:mb[muratoff_bundle]: : :" }, { index: 153, content: "cr[corona_radiata]: : :" }, { index: 154, content: "cr[corona_radiata]:cc[corpus_callosum]: : :" }, { index: 155, content: "cr[corona_radiata]:fminor-p[forceps_minor]: : :" }, { index: 156, content: "cr[corona_radiata]:slf[superior_longitudinal_fasciculus]: : :" }, { index: 157, content: "cr[corona_radiata]:fof[occipitofrontal_fasciculus]: : :" }, { index: 158, content: "cr[corona_radiata]: : :" },
{ index: 159, content: "cr[corona_radiata]:ica[anterior_limb_of_internal_capsule]: : :" }, { index: 160, content: "cr[corona_radiata]:icp[posterior_limb_of_internal_capsule]: : :" }, { index: 161, content: "cr[corona_radiata]: : :" }, { index: 162, content: "cr[corona_radiata]:ica[anterior_limb_of_internal_capsule]: : :" }, { index: 163, content: "cr[corona_radiata]:icp[posterior_limb_of_internal_capsule]: : :" }, { index: 164, content: "cr[corona_radiata]:slf[superior_longitudinal_fasciculus]: : :" }, { index: 165, content: "cr[corona_radiata]:fof[occipitofrontal_fasciculus]: : :" },
{ index: 166, content: "cr[corona_radiata]: : :" }, { index: 167, content: "cr[corona_radiata]:slf[superior_longitudinal_fasciculus]: : :" }, { index: 168, content: "cr[corona_radiata]:slf[superior_longitudinal_fasciculus]:scg[superior_cinglulum]: : :" }, { index: 169, content: "cr[corona_radiata]:slf[superior_longitudinal_fasciculus]:ffc[fibers_in_frontal_pole]: : :" }, { index: 170, content: "cr[corona_radiata]: : :" }, { index: 171, content: "cr[corona_radiata]:slf[superior_longitudinal_fasciculus]: : :" }, { index: 172, content: "cr[corona_radiata]:mdlf-ext[middle_longitudinal_fasciculus_from_STG_to_parietal]: : :" },
{ index: 173, content: "cr[corona_radiata]: : :" }, { index: 174, content: "cr[corona_radiata]: : :" }, { index: 175, content: "cr[corona_radiata]:slf[superior_longitudinal_fasciculus]: : :" }, { index: 176, content: "HipF[Hippocampal_formation]: : :" }, { index: 177, content: "Amy[Amygdala]: : :" }, { index: 178, content: "Thal[Thalamus]: : :" }, { index: 179, content: "ZI[Zona_incerta]: : :" }, { index: 180, content: "Sth[Subthalamus]: : :" }, { index: 181, content: "MGN[Medial_geniculate_nucleus]: : :" }, { index: 182, content: "LGN[Lateral_geniculate_nucleus]: : :" },
{ index: 183, content: "Cd[Caudate]: : :" }, { index: 184, content: "Pu[Putamen]: : :" }, { index: 185, content: "Acb[Acumbens]: : :" }, { index: 186, content: "Cl[Claustrum_and_endopirform_claustrum]: : :" }, { index: 187, content: "Hypo[Hypothalamus]: : :" }, { index: 188, content: "Sep[Septum]: : :" }, { index: 189, content: "GP[Globus_pallidus]: : :" }, { index: 190, content: "IC[Inferior_colliculus]: : :" }, { index: 191, content: "SC[Superior_colliculus]: : :" }, { index: 192, content: "SNR[Substantia_nigra]: : :" }, { index: 193, content: "PAG[Periaqueductal_gray]: : :" },
{ index: 194, content: "HB[habenular_nuclei]: : :" }, { index: 195, content: "CeB[Cerebellum]: : :" }, { index: 196, content: "A10(vH): : :" }, { index: 197, content: "A9(vH): : :" }, { index: 198, content: "A46(vH): : :" }, { index: 199, content: "8a(vH): : :" }, { index: 200, content: "8b(vH): : :" }, { index: 201, content: "A47L(vH): : :" }, { index: 202, content: "A47M(vH): : :" }, { index: 203, content: "A45(vH): : :" }, { index: 204, content: "ProM(vH): : :" }, { index: 205, content: "A32V(vH): : :" }, { index: 206, content: "A32D(vH): : :" }, { index: 207, content: "A14(vH): : :" },
{ index: 208, content: "A24a(vH): : :" }, { index: 209, content: "A24b(vH): : :" }, { index: 210, content: "A24cd(vH): : :" }, { index: 211, content: "A25(vH): : :" }, { index: 212, content: "A11L(vH): : :" }, { index: 213, content: "A11M(vH): : :" }, { index: 214, content: "A13L(vH): : :" }, { index: 215, content: "A13M(vH): : :" }, { index: 216, content: "Gu(vH): : :" }, { index: 217, content: "Opro(vH): : :" }, { index: 218, content: "OPAI(vH): : :" }, { index: 219, content: "A6D(vH): : :" }, { index: 220, content: "A6M(vH): : :" }, { index: 221, content: "A6V(vH): : :" }, {
index: 222,
content: "A4M(vH): : :"
}, { index: 223, content: "A4L(vH): : :" }, { index: 224, content: "S1M(vH): : :" }, { index: 225, content: "S1D(vH): : :" }, { index: 226, content: "S1V(vH): : :" }, { index: 227, content: "S2a(vH): : :" }, { index: 228, content: "S2b(vH): : :" }, { index: 229, content: "Core(vH): : :" }, { index: 230, content: "BeltM(vH): : :" }, { index: 231, content: "BeltL(vH): : :" }, { index: 232, content: "PBR(vH): : :" }, { index: 233, content: "PBC(vH): : :" }, { index: 234, content: "STR(vH): : :" }, { index: 235, content: "AI(vH): : :" }, { index: 236, content: "DI(vH): : :" },
{ index: 237, content: "GI(vH): : :" }, { index: 238, content: "Rel(vH): : :" }, { index: 239, content: "PalR(vH): : :" }, { index: 240, content: "PalC(vH): : :" }, { index: 241, content: "Tpt(vH): : :" }, { index: 242, content: "TPOR(vH): : :" }, { index: 243, content: "TPOC(vH): : :" }, { index: 244, content: "FSTR(vH): : :" }, { index: 245, content: "FSTC(vH): : :" }, { index: 246, content: "TEa(vH): : :" }, { index: 247, content: "TEb(vH): : :" }, { index: 248, content: "TEc(vH): : :" }, { index: 249, content: "TEd(vH): : :" }, { index: 250, content: "TEe(vH): : :" }, {
index: 251,
content: "TEf(vH): : :"
}, { index: 252, content: "TPPro(vH): : :" }, { index: 253, content: "PrhR(vH): : :" }, { index: 254, content: "PrhC(vH): : :" }, { index: 255, content: "Enta(vH): : :" }, { index: 256, content: "Entb(vH): : :" }, { index: 257, content: "PHGa(vH): : :" }, { index: 258, content: "PHGb(vH): : :" }, { index: 259, content: "PHGc(vH): : :" }, { index: 260, content: "Pri(vH): : :" }, { index: 261, content: "SB(vH): : :" }, { index: 262, content: "PEa(vH): : :" }, { index: 263, content: "PEb(vH): : :" }, { index: 264, content: "PF/PFGa(vH): : :" }, {
index: 265,
content: "PF/PFGb(vH): : :"
}, { index: 266, content: "PGa(vH): : :" }, { index: 267, content: "PGb(vH): : :" }, { index: 268, content: "Opta(vH): : :" }, { index: 269, content: "Optb(vH): : :" }, { index: 270, content: "IPa(vH): : :" }, { index: 271, content: "IPb(vH): : :" }, { index: 272, content: "IPc(vH): : :" }, { index: 273, content: "IPd(vH): : :" }, { index: 274, content: "A23a(vH): : :" }, { index: 275, content: "A23b(vH): : :" }, { index: 276, content: "A23V(vH): : :" }, { index: 277, content: "A29M(vH): : :" }, { index: 278, content: "A30(vH): : :" }, { index: 279, content: "A29V(vH): : :" },
{ index: 280, content: "A31(vH): : :" }, { index: 281, content: "PGMa(vH): : :" }, { index: 282, content: "PGMb(vH): : :" }, { index: 283, content: "ProSt(vH): : :" }, { index: 284, content: "V1a(vH): : :" }, { index: 285, content: "V1b(vH): : :" }, { index: 286, content: "V2M(vH): : :" }, { index: 287, content: "V2L(vH): : :" }, { index: 288, content: "V2V(vH): : :" }, { index: 289, content: "V3D(vH): : :" }, { index: 290, content: "V3L(vH): : :" }, { index: 291, content: "V3V(vH): : :" }, { index: 292, content: "V4L(vH): : :" }, { index: 293, content: "V4V(vH): : :" }, {
index: 294,
content: "V5R(vH): : :"
}, { index: 295, content: "V5C(vH): : :" }, { index: 296, content: "V6R(vH): : :" }, { index: 297, content: "V6M(vH): : :" }, { index: 298, content: "V6D(vH): : :" }, { index: 299, content: "A19DI(vH): : :" }, { index: 300, content: "A19M(vH): : :" }, { index: 301, content: "MST(vH): : :" }]
},
header: {
images: { summaryimagefile: "NIH_combined_wm_sub_cortexH_reindex" },
name: "n.a.",
type: "Combined all white matter, subcortical, and cortex (vH) ROIs reindex"
}, version: 2
}
},
}
papaya.data.Atlases['v2_P'] = {
labels: {
atlas: {
data: {
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content: "cr[corona_radiata]:cc[corpus_callosum]:scg[superior_cinglulum]: : :"
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header: {
images: {
summaryimagefile: "NIH_combined_wm_sub_cortexP_reindex"
},
name: "n.a.",
type: "Combined all white matter, subcortical, and cortex (vPaxinos) ROIs reindex"
},
version: 2
}
},
}
papaya.data.Atlases['CERB_17lobe'] = {
labels: {
atlas: {
data: {
label: cerb_labels.lobe1_17
},
header: {
images: {
summaryimagefile: "CERB_17lobe"
},
name: "CERB_17lobe 全名",
type: "Label"
},
version: 2
}
},
}
papaya.data.Atlases['CERB_13lobe'] = {
labels: {
atlas: {
data: {
label: cerb_labels.lobe1_13
},
header: {
images: {
summaryimagefile: "CERB_13lobe"
},
name: "CERB_13lobe 全名",
type: "Label"
},
version: 2
}
},
}
papaya.data.Atlases['sub_all_gradient'] = papaya.data.Atlases['CERB_17lobe']
papaya.data.Atlases['sub_all_5k_8k_gradient'] = papaya.data.Atlases['CERB_17lobe']
papaya.data.Atlases['MBMv5_gradients'] = papaya.data.Atlases['CERB_17lobe']
var papayaLoadableImages = [
{ //0
// name: "atlas_MBM_cortex_vPaxinos_both_same",
// nicename: "Atlas",
// url: "data/atlas_MBM_cortex_vPaxinos_both_same.nii.gz",
hide: true
},
{ //1
name: "atlas_MBM_cortex_vPaxinos_both_same",
nicename: "atlas_MBM_cortex_vPaxinos_both_same",
url: "data/atlas_MBM_cortex_vPaxinos_both_same.nii.gz",
hide: true
},
{ //2
name: "template_myelinmap_brain",
nicename: "template_myelinmap",
url: "data/template_myelinmap_brain.nii.gz",
hide: true
},
{//3
name: "template_T1w_brain",
nicename: "template_T1w",
url: "data/template_T1w_brain.nii.gz",
hide: true
},
{ //4
name: "template_T2w_brain",
nicename: "template_T2w",
url: "data/template_T2w_brain.nii.gz",
hide: true
},
{ //5
name: 'graymid',
nicename: "Gray Mid Right",
url: "data" + "/surfFS.rh.graymid.surf.gii",
surface: true,
hide: true
},
{ //6
name: "Paxinos Surface Boundaries",
nicename: "Paxinos Surface Boundaries",
url: "data" + '/atlas_MBM_cortex_vPaxinos_and_subcortical_borders.R.func.gii',
surface: true,
hide: true
},
{ //7
name: 'Paxinos Boundaries',
nicename: "Paxinos Atlas Boundaries",
url: "data" + '/atlas_MBM_cortex_vPaxinos_and_subcortical_borders.nii.gz',
hide: true
},
{ //8
name: 'v4_atlas',
nicename: "v4_atlas",
url: "data" + '/atlas_MBMv4_cortex_with_networks.nii.gz',
hide: true
},
{ //9
name: 'vH_atlas',
nicename: "vH_atlas",
url: "data" + '/atlas_MBM_cortex_vH_both_same.nii.gz',
hide: true
},
{ //10
name: 'Network_primary',
nicename: "parcellation_primary",
url: "data" + '/atlas_MBMv4_networks_parcellation_primary.nii.gz',
hide: true
},
{ //11
name: 'Network_secondary',
nicename: "parcellation_secondary",
url: "data" + '/atlas_MBMv4_networks_parcellation_secondary.nii.gz',
hide: true
},
{ //12
name: 'v4 surface label',
nicename: "v4 surface label",
url: "data" + '/surfFS.rh.MBMv4_cortex_parcellation.label.gii',
surface: true,
hide: true
},
{ //13
name: 'v4 surface shape',
nicename: "v4 surface shape",
url: "data" + '/surfFS.rh.MBMv4_cortex_parcellation.R.func.gii',
surface: true,
hide: true
},
{ //14 network
name: 'v4_network',
nicename: "v4 network",
url: "data" + '/atlas_MBMv4_networks_parcellation.nii.gz',
hide: true
},
{ // 15
name: 'vH_surface',
nicename: 'vH surface',
url: 'data' + '/surfFS.rh.MBM_cortex_vH_boundary.shape.gii',
surface: true,
hide: true
},
// -----------------------------
{ // 16
name: 'v4_surface_boundaries',
// nicename: 'vH surface',
url: 'data' + '/GZipBase64Binary_surfFS3.rh.MBMv4_cortex_parcellation.boundary.func.gii',
hide: true
},
{ // 17
name: 'vH_surface_boundaries',
// nicename: 'vH surface',
url: 'data' + '/GZipBase64Binary_surfFS.rh.MBM_cortex_vH_boundary.func.gii',
hide: true
},
{ // 18
name: 'vNetwork_surface_boundaries',
// nicename: 'vH surface',
url: 'data' + '/GZipBase64Binary_surfFS.rh.MBMv4_networks_parcellation_primary_boundary.func.gii',
hide: true
},
// ------------
// v2 template
{ //19
name: "Template_sym_FA_80um_char",
nicename: "Template_sym_FA_80um_char",
url: "data/Template_sym_FA_80um_char.nii.gz",
hide: true
},
// v2_P
{ //20
hide: !0,
name: "NIH_combined_wm_sub_cortexP_reindex",
nicename: "Atlas",
url: "data/NIH_combined_wm_sub_cortexP_reindex.nii.gz",
hide: true
},
// v2_H
{ //21
name: "NIH_combined_wm_sub_cortexH_reindex",
nicename: "Atlas",
url: "data/NIH_combined_wm_sub_cortexH_reindex.nii.gz",
hide: true