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diff --git a/docs/html/darray__async_8c.html b/docs/html/darray__async_8c.html index 7fbbb65b59..e223887c31 100644 --- a/docs/html/darray__async_8c.html +++ b/docs/html/darray__async_8c.html @@ -93,10 +93,10 @@ - + - - + + @@ -485,7 +485,7 @@

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examples → src Relation

File in scorpio5/examplesIncludes file in scorpio5/src
c / darray_async.cclib / pio.h
c / darray_no_async.cclib / pio.h
c / example1.cclib / pio.h
c / example2.cclib / pio.h
c / examplePio.cclib / pio.h
c / netcdf4p.cclib / pio.h
c / put_var.cclib / pio.h
c / test_adios.cclib / pio.h
c / test_hdf5.cclib / pio.h
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c → src Relation

File in scorpio5/examples/cIncludes file in scorpio5/src
darray_async.cclib / pio.h
darray_no_async.cclib / pio.h
example1.cclib / pio.h
example2.cclib / pio.h
examplePio.cclib / pio.h
netcdf4p.cclib / pio.h
put_var.cclib / pio.h
test_adios.cclib / pio.h
test_hdf5.cclib / pio.h
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                        diff --git a/docs/html/namespacespio__inq__dim__cint.html b/docs/html/namespacespio__inq__dim__cint.html index 1c1e1c9798..ff7d65a48e 100644 --- a/docs/html/namespacespio__inq__dim__cint.html +++ b/docs/html/namespacespio__inq__dim__cint.html @@ -72,7 +72,7 @@
                        -Generated on Wed Apr 8 2026 15:34:17 for SCORPIO by doxygen 1.9.1 +Generated on Thu Apr 9 2026 10:56:45 for SCORPIO by doxygen 1.9.1
                        diff --git a/docs/html/namespacespio__inq__file.html b/docs/html/namespacespio__inq__file.html index 2c1bb8c8e7..89062f7abd 100644 --- a/docs/html/namespacespio__inq__file.html +++ b/docs/html/namespacespio__inq__file.html @@ -107,7 +107,7 @@
                        -Generated on Wed Apr 8 2026 15:34:17 for SCORPIO by doxygen 1.9.1 +Generated on Thu Apr 9 2026 10:56:45 for SCORPIO by doxygen 1.9.1
                        diff --git a/docs/html/namespacespio__inq__file__cint.html b/docs/html/namespacespio__inq__file__cint.html index 2e57f2e919..b90898cf35 100644 --- a/docs/html/namespacespio__inq__file__cint.html +++ b/docs/html/namespacespio__inq__file__cint.html @@ -72,7 +72,7 @@
                        -Generated on Wed Apr 8 2026 15:34:17 for SCORPIO by doxygen 1.9.1 +Generated on Thu Apr 9 2026 10:56:45 for SCORPIO by doxygen 1.9.1
                        diff --git a/docs/html/namespacespio__inq__var.html b/docs/html/namespacespio__inq__var.html index 24f18d1761..0d80ef30bb 100644 --- a/docs/html/namespacespio__inq__var.html +++ b/docs/html/namespacespio__inq__var.html @@ -158,7 +158,7 @@
                        -Generated on Wed Apr 8 2026 15:34:17 for SCORPIO by doxygen 1.9.1 +Generated on Thu Apr 9 2026 10:56:45 for SCORPIO by doxygen 1.9.1
                        diff --git a/docs/html/namespacespio__inq__var__cint.html b/docs/html/namespacespio__inq__var__cint.html index 4a871c4874..64e1560823 100644 --- a/docs/html/namespacespio__inq__var__cint.html +++ b/docs/html/namespacespio__inq__var__cint.html @@ -72,7 +72,7 @@
                        -Generated on Wed Apr 8 2026 15:34:17 for SCORPIO by doxygen 1.9.1 +Generated on Thu Apr 9 2026 10:56:45 for SCORPIO by doxygen 1.9.1
                        diff --git a/docs/html/namespacespio__misc__api.html b/docs/html/namespacespio__misc__api.html index bb12ccfb9a..f9ccde5db6 100644 --- a/docs/html/namespacespio__misc__api.html +++ b/docs/html/namespacespio__misc__api.html @@ -401,7 +401,7 @@

                        -Generated on Wed Apr 8 2026 15:34:17 for SCORPIO by doxygen 1.9.1 +Generated on Thu Apr 9 2026 10:56:45 for SCORPIO by doxygen 1.9.1
                        diff --git a/docs/html/namespacespio__misc__api__cint.html b/docs/html/namespacespio__misc__api__cint.html index 9dc76056e9..460a762d36 100644 --- a/docs/html/namespacespio__misc__api__cint.html +++ b/docs/html/namespacespio__misc__api__cint.html @@ -72,7 +72,7 @@
                        -Generated on Wed Apr 8 2026 15:34:17 for SCORPIO by doxygen 1.9.1 +Generated on Thu Apr 9 2026 10:56:45 for SCORPIO by doxygen 1.9.1
                        diff --git a/docs/html/namespacespio__netcdf__types.html b/docs/html/namespacespio__netcdf__types.html index 4bd48ab9a8..57009be77a 100644 --- a/docs/html/namespacespio__netcdf__types.html +++ b/docs/html/namespacespio__netcdf__types.html @@ -125,7 +125,7 @@

                        -Generated on Wed Apr 8 2026 15:34:17 for SCORPIO by doxygen 1.9.1 +Generated on Thu Apr 9 2026 10:56:45 for SCORPIO by doxygen 1.9.1
                        diff --git a/docs/html/namespacespio__put__att.html b/docs/html/namespacespio__put__att.html index 43c868338e..2d6adac6c8 100644 --- a/docs/html/namespacespio__put__att.html +++ b/docs/html/namespacespio__put__att.html @@ -149,7 +149,7 @@
                        -Generated on Wed Apr 8 2026 15:34:17 for SCORPIO by doxygen 1.9.1 +Generated on Thu Apr 9 2026 10:56:45 for SCORPIO by doxygen 1.9.1
                        diff --git a/docs/html/namespacespio__put__att__cint.html b/docs/html/namespacespio__put__att__cint.html index 080931295c..5f496ed24f 100644 --- a/docs/html/namespacespio__put__att__cint.html +++ b/docs/html/namespacespio__put__att__cint.html @@ -72,7 +72,7 @@
                        -Generated on Wed Apr 8 2026 15:34:17 for SCORPIO by doxygen 1.9.1 +Generated on Thu Apr 9 2026 10:56:45 for SCORPIO by doxygen 1.9.1
                        diff --git a/docs/html/namespacespio__put__var.html b/docs/html/namespacespio__put__var.html index f805c1d61e..69cb3a3b3c 100644 --- a/docs/html/namespacespio__put__var.html +++ b/docs/html/namespacespio__put__var.html @@ -4934,7 +4934,7 @@

                        -Generated on Wed Apr 8 2026 15:34:17 for SCORPIO by doxygen 1.9.1 +Generated on Thu Apr 9 2026 10:56:45 for SCORPIO by doxygen 1.9.1
                        diff --git a/docs/html/namespacespio__put__var__cint.html b/docs/html/namespacespio__put__var__cint.html index 75f8f3dc9d..368b911275 100644 --- a/docs/html/namespacespio__put__var__cint.html +++ b/docs/html/namespacespio__put__var__cint.html @@ -72,7 +72,7 @@
                        -Generated on Wed Apr 8 2026 15:34:17 for SCORPIO by doxygen 1.9.1 +Generated on Thu Apr 9 2026 10:56:45 for SCORPIO by doxygen 1.9.1
                        diff --git a/docs/html/namespacespio__util.html b/docs/html/namespacespio__util.html index d0295b52e7..89a7970e3a 100644 --- a/docs/html/namespacespio__util.html +++ b/docs/html/namespacespio__util.html @@ -209,7 +209,7 @@

                        -Generated on Wed Apr 8 2026 15:34:17 for SCORPIO by doxygen 1.9.1 +Generated on Thu Apr 9 2026 10:56:45 for SCORPIO by doxygen 1.9.1
                        diff --git a/docs/html/namespacespio__util__cint.html b/docs/html/namespacespio__util__cint.html index 890f5684de..2c5dff91f8 100644 --- a/docs/html/namespacespio__util__cint.html +++ b/docs/html/namespacespio__util__cint.html @@ -72,7 +72,7 @@
                        -Generated on Wed Apr 8 2026 15:34:17 for SCORPIO by doxygen 1.9.1 +Generated on Thu Apr 9 2026 10:56:45 for SCORPIO by doxygen 1.9.1
                        diff --git a/docs/html/netcdf4p_8c.html b/docs/html/netcdf4p_8c.html index a4c74ea2d1..78ffaae4f0 100644 --- a/docs/html/netcdf4p_8c.html +++ b/docs/html/netcdf4p_8c.html @@ -101,7 +101,7 @@ - + @@ -230,7 +230,7 @@

                        -Generated on Wed Apr 8 2026 15:34:16 for SCORPIO by doxygen 1.9.1 +Generated on Thu Apr 9 2026 10:56:44 for SCORPIO by doxygen 1.9.1
                        diff --git a/docs/html/netcdf4p_8c__incl.map b/docs/html/netcdf4p_8c__incl.map index c5559acc3a..b6058410d7 100644 --- a/docs/html/netcdf4p_8c__incl.map +++ b/docs/html/netcdf4p_8c__incl.map @@ -9,7 +9,7 @@ - + diff --git a/docs/html/netcdf4p_8c__incl.png b/docs/html/netcdf4p_8c__incl.png index eef1bd6a55..5f01841b84 100644 Binary files a/docs/html/netcdf4p_8c__incl.png and b/docs/html/netcdf4p_8c__incl.png differ diff --git a/docs/html/pages.html b/docs/html/pages.html index 9512f924b5..e448675e3d 100644 --- a/docs/html/pages.html +++ b/docs/html/pages.html @@ -86,7 +86,7 @@
                        -Generated on Wed Apr 8 2026 15:34:17 for SCORPIO by doxygen 1.9.1 +Generated on Thu Apr 9 2026 10:56:45 for SCORPIO by doxygen 1.9.1
                        diff --git a/docs/html/pio_8_f90.html b/docs/html/pio_8_f90.html index 4c1c0571fb..fc3ecfad7e 100644 --- a/docs/html/pio_8_f90.html +++ b/docs/html/pio_8_f90.html @@ -87,7 +87,7 @@
                        -Generated on Wed Apr 8 2026 15:34:16 for SCORPIO by doxygen 1.9.1 +Generated on Thu Apr 9 2026 10:56:44 for SCORPIO by doxygen 1.9.1
                        diff --git a/docs/html/pio_8h.html b/docs/html/pio_8h.html index 11528b0192..076c40b116 100644 --- a/docs/html/pio_8h.html +++ b/docs/html/pio_8h.html @@ -97,8 +97,8 @@ - - + +
                        @@ -113,9 +113,9 @@ - - - + + +
                        @@ -281,7 +281,7 @@   PIO_IOTYPE_HDF5C = 9
                        } - These are the supported methods of reading/writing netCDF files. More...
                        + These are the supported methods of reading/writing input/output files. More...
                          enum  PIO_REARRANGERS { PIO_REARR_BOX = 1 , PIO_REARR_SUBSET = 2 @@ -941,26 +941,26 @@

                        -

                        These are the supported methods of reading/writing netCDF files.

                        -

                        (Not all methods can be used with all netCDF files.)

                        +

                        These are the supported methods of reading/writing input/output files.

                        +

                        The PnetCDF, NetCDF and HDF5 libraries output data in the NetCDF file format. The ADIOS library outputs data in the BP file format.

                        - - - - - - - - -
                        Enumerator
                        PIO_IOTYPE_PNETCDF 

                        Parallel Netcdf (parallel)

                        +
                        Enumerator
                        PIO_IOTYPE_PNETCDF 

                        Parallel NetCDF library (Parallel I/O, NetCDF3 classic file format)

                        PIO_IOTYPE_NETCDF 

                        Netcdf3 Classic format (serial)

                        +
                        PIO_IOTYPE_NETCDF 

                        NetCDF library (Serial I/O, NetCDF3 classic file format)

                        PIO_IOTYPE_NETCDF4C 

                        NetCDF4 (HDF5) compressed format (serial)

                        +
                        PIO_IOTYPE_NETCDF4C 

                        NetCDF library (Serial I/O, NetCDF4/HDF5 compressed file format)

                        PIO_IOTYPE_NETCDF4P 

                        NetCDF4 (HDF5) parallel.

                        +
                        PIO_IOTYPE_NETCDF4P 

                        NetCDF library (Parallel I/O, NetCDF4/HDF5 file format)

                        PIO_IOTYPE_NETCDF4P_NCZARR 

                        NetCDF4 (HDF5) parallel NCZarr.

                        +
                        PIO_IOTYPE_NETCDF4P_NCZARR 

                        NetCDF library (Parallel I/O, NCZarr file format)

                        PIO_IOTYPE_ADIOS 

                        ADIOS parallel.

                        +
                        PIO_IOTYPE_ADIOS 

                        ADIOS library (Parallel I/O, ADIOS BP file format)

                        PIO_IOTYPE_ADIOSC 

                        ADIOS parallel with compression.

                        +
                        PIO_IOTYPE_ADIOSC 

                        ADIOS library (Parallel I/O, ADIOS BP compressed file format)

                        PIO_IOTYPE_HDF5 

                        HDF5 parallel.

                        +
                        PIO_IOTYPE_HDF5 

                        HDF5 library (Parallel I/O, NetCDF4/HDF5 file format)

                        PIO_IOTYPE_HDF5C 

                        HDF5 parallel with compression.

                        +
                        PIO_IOTYPE_HDF5C 

                        HDF5 library (Parallel I/O, NetCDF4/HDF5 compressed file format)

                        @@ -1043,7 +1043,7 @@

                        -Generated on Wed Apr 8 2026 15:34:16 for SCORPIO by doxygen 1.9.1 +Generated on Thu Apr 9 2026 10:56:44 for SCORPIO by doxygen 1.9.1
                        diff --git a/docs/html/pio_8h__dep__incl.map b/docs/html/pio_8h__dep__incl.map index d9d3caf442..3b71e9fd69 100644 --- a/docs/html/pio_8h__dep__incl.map +++ b/docs/html/pio_8h__dep__incl.map @@ -6,7 +6,7 @@ - - - + + + diff --git a/docs/html/pio_8h__dep__incl.png b/docs/html/pio_8h__dep__incl.png index 5b71a0ef22..3878bb327c 100644 Binary files a/docs/html/pio_8h__dep__incl.png and b/docs/html/pio_8h__dep__incl.png differ diff --git a/docs/html/pio_8h__incl.map b/docs/html/pio_8h__incl.map index 2585b89606..5c661477d6 100644 --- a/docs/html/pio_8h__incl.map +++ b/docs/html/pio_8h__incl.map @@ -5,6 +5,6 @@ - - + + diff --git a/docs/html/pio_8h__incl.png b/docs/html/pio_8h__incl.png index 6fe883f706..d8f43e4761 100644 Binary files a/docs/html/pio_8h__incl.png and b/docs/html/pio_8h__incl.png differ diff --git a/docs/html/pio_8h_source.html b/docs/html/pio_8h_source.html index 952c39ba49..31caa57469 100644 --- a/docs/html/pio_8h_source.html +++ b/docs/html/pio_8h_source.html @@ -981,50 +981,50 @@
                        1198  bool is_reopened;
                        1199 } file_desc_t;
                        1200 
                        -
                        1205 enum PIO_IOTYPE
                        -
                        1206 {
                        -
                        1208  PIO_IOTYPE_PNETCDF = 1,
                        -
                        1209 
                        -
                        1211  PIO_IOTYPE_NETCDF = 2,
                        -
                        1212 
                        -
                        1214  PIO_IOTYPE_NETCDF4C = 3,
                        -
                        1215 
                        -
                        1217  PIO_IOTYPE_NETCDF4P = 4,
                        -
                        1218 
                        -
                        1220  PIO_IOTYPE_NETCDF4P_NCZARR = 5,
                        -
                        1221 
                        -
                        1223  PIO_IOTYPE_ADIOS = 6,
                        -
                        1224 
                        -
                        1226  PIO_IOTYPE_ADIOSC = 7,
                        -
                        1227 
                        -
                        1229  PIO_IOTYPE_HDF5 = 8,
                        -
                        1230 
                        -
                        1232  PIO_IOTYPE_HDF5C = 9
                        -
                        1233 };
                        -
                        1234 
                        -
                        1238 enum PIO_REARRANGERS
                        -
                        1239 {
                        -
                        1241  PIO_REARR_BOX = 1,
                        -
                        1242 
                        -
                        1244  PIO_REARR_SUBSET = 2,
                        -
                        1245 
                        -
                        1247  PIO_REARR_ANY = 3
                        -
                        1248 };
                        -
                        1249 
                        -
                        1253 enum PIO_ERROR_HANDLERS
                        -
                        1254 {
                        -
                        1256  PIO_INTERNAL_ERROR = (-51),
                        -
                        1257 
                        -
                        1260  PIO_BCAST_ERROR = (-52),
                        -
                        1261 
                        -
                        1263  PIO_REDUCE_ERROR = (-53),
                        -
                        1264 
                        -
                        1266  PIO_RETURN_ERROR = (-54)
                        -
                        1267 };
                        -
                        1268 
                        -
                        1269 #include "pio_api.h"
                        +
                        1207 enum PIO_IOTYPE
                        +
                        1208 {
                        +
                        1210  PIO_IOTYPE_PNETCDF = 1,
                        +
                        1211 
                        +
                        1213  PIO_IOTYPE_NETCDF = 2,
                        +
                        1214 
                        +
                        1216  PIO_IOTYPE_NETCDF4C = 3,
                        +
                        1217 
                        +
                        1219  PIO_IOTYPE_NETCDF4P = 4,
                        +
                        1220 
                        +
                        1222  PIO_IOTYPE_NETCDF4P_NCZARR = 5,
                        +
                        1223 
                        +
                        1225  PIO_IOTYPE_ADIOS = 6,
                        +
                        1226 
                        +
                        1228  PIO_IOTYPE_ADIOSC = 7,
                        +
                        1229 
                        +
                        1231  PIO_IOTYPE_HDF5 = 8,
                        +
                        1232 
                        +
                        1234  PIO_IOTYPE_HDF5C = 9
                        +
                        1235 };
                        +
                        1236 
                        +
                        1240 enum PIO_REARRANGERS
                        +
                        1241 {
                        +
                        1243  PIO_REARR_BOX = 1,
                        +
                        1244 
                        +
                        1246  PIO_REARR_SUBSET = 2,
                        +
                        1247 
                        +
                        1249  PIO_REARR_ANY = 3
                        +
                        1250 };
                        +
                        1251 
                        +
                        1255 enum PIO_ERROR_HANDLERS
                        +
                        1256 {
                        +
                        1258  PIO_INTERNAL_ERROR = (-51),
                        +
                        1259 
                        +
                        1262  PIO_BCAST_ERROR = (-52),
                        +
                        1263 
                        +
                        1265  PIO_REDUCE_ERROR = (-53),
                        +
                        1266 
                        +
                        1268  PIO_RETURN_ERROR = (-54)
                        +
                        1269 };
                        1270 
                        -
                        1271 #endif // _PIO_H_
                        +
                        1271 #include "pio_api.h"
                        +
                        1272 
                        +
                        1273 #endif // _PIO_H_
                        wmulti_buffer
                        struct wmulti_buffer wmulti_buffer
                        The multi buffer holds data from one or more variables.
                        PIO_Offset
                        PIO_OFFSET_C_TYPENAME PIO_Offset
                        Definition: pio.h:85
                        PIO_MAX_DIMS
                        #define PIO_MAX_DIMS
                        Definition: pio.h:106
                        @@ -1039,25 +1039,25 @@
                        PIO_REARR_COMM_FC_1D_IO2COMP
                        @ PIO_REARR_COMM_FC_1D_IO2COMP
                        IO procs to comp procs only.
                        Definition: pio.h:462
                        PIO_REARR_COMM_FC_1D_COMP2IO
                        @ PIO_REARR_COMM_FC_1D_COMP2IO
                        Comp procs to io procs only.
                        Definition: pio.h:459
                        PIO_REARR_COMM_FC_2D_ENABLE
                        @ PIO_REARR_COMM_FC_2D_ENABLE
                        Comp procs to io procs and vice versa.
                        Definition: pio.h:456
                        -
                        PIO_ERROR_HANDLERS
                        PIO_ERROR_HANDLERS
                        These are the supported error handlers.
                        Definition: pio.h:1254
                        -
                        PIO_INTERNAL_ERROR
                        @ PIO_INTERNAL_ERROR
                        Errors cause abort.
                        Definition: pio.h:1256
                        -
                        PIO_REDUCE_ERROR
                        @ PIO_REDUCE_ERROR
                        Error codes are reduced across all processes.
                        Definition: pio.h:1263
                        -
                        PIO_RETURN_ERROR
                        @ PIO_RETURN_ERROR
                        Errors are returned to caller with no internal action.
                        Definition: pio.h:1266
                        -
                        PIO_BCAST_ERROR
                        @ PIO_BCAST_ERROR
                        Error codes from io process with rank 0 is broadcasted to all processes.
                        Definition: pio.h:1260
                        -
                        PIO_IOTYPE
                        PIO_IOTYPE
                        These are the supported methods of reading/writing netCDF files.
                        Definition: pio.h:1206
                        -
                        PIO_IOTYPE_NETCDF4P_NCZARR
                        @ PIO_IOTYPE_NETCDF4P_NCZARR
                        NetCDF4 (HDF5) parallel NCZarr.
                        Definition: pio.h:1220
                        -
                        PIO_IOTYPE_NETCDF4P
                        @ PIO_IOTYPE_NETCDF4P
                        NetCDF4 (HDF5) parallel.
                        Definition: pio.h:1217
                        -
                        PIO_IOTYPE_HDF5
                        @ PIO_IOTYPE_HDF5
                        HDF5 parallel.
                        Definition: pio.h:1229
                        -
                        PIO_IOTYPE_NETCDF4C
                        @ PIO_IOTYPE_NETCDF4C
                        NetCDF4 (HDF5) compressed format (serial)
                        Definition: pio.h:1214
                        -
                        PIO_IOTYPE_HDF5C
                        @ PIO_IOTYPE_HDF5C
                        HDF5 parallel with compression.
                        Definition: pio.h:1232
                        -
                        PIO_IOTYPE_ADIOS
                        @ PIO_IOTYPE_ADIOS
                        ADIOS parallel.
                        Definition: pio.h:1223
                        -
                        PIO_IOTYPE_ADIOSC
                        @ PIO_IOTYPE_ADIOSC
                        ADIOS parallel with compression.
                        Definition: pio.h:1226
                        -
                        PIO_IOTYPE_NETCDF
                        @ PIO_IOTYPE_NETCDF
                        Netcdf3 Classic format (serial)
                        Definition: pio.h:1211
                        -
                        PIO_IOTYPE_PNETCDF
                        @ PIO_IOTYPE_PNETCDF
                        Parallel Netcdf (parallel)
                        Definition: pio.h:1208
                        -
                        PIO_REARRANGERS
                        PIO_REARRANGERS
                        These are the supported output data rearrangement methods.
                        Definition: pio.h:1239
                        -
                        PIO_REARR_BOX
                        @ PIO_REARR_BOX
                        Box rearranger.
                        Definition: pio.h:1241
                        -
                        PIO_REARR_SUBSET
                        @ PIO_REARR_SUBSET
                        Subset rearranger.
                        Definition: pio.h:1244
                        -
                        PIO_REARR_ANY
                        @ PIO_REARR_ANY
                        Let the library choose the rearranger.
                        Definition: pio.h:1247
                        +
                        PIO_ERROR_HANDLERS
                        PIO_ERROR_HANDLERS
                        These are the supported error handlers.
                        Definition: pio.h:1256
                        +
                        PIO_INTERNAL_ERROR
                        @ PIO_INTERNAL_ERROR
                        Errors cause abort.
                        Definition: pio.h:1258
                        +
                        PIO_REDUCE_ERROR
                        @ PIO_REDUCE_ERROR
                        Error codes are reduced across all processes.
                        Definition: pio.h:1265
                        +
                        PIO_RETURN_ERROR
                        @ PIO_RETURN_ERROR
                        Errors are returned to caller with no internal action.
                        Definition: pio.h:1268
                        +
                        PIO_BCAST_ERROR
                        @ PIO_BCAST_ERROR
                        Error codes from io process with rank 0 is broadcasted to all processes.
                        Definition: pio.h:1262
                        +
                        PIO_IOTYPE
                        PIO_IOTYPE
                        These are the supported methods of reading/writing input/output files.
                        Definition: pio.h:1208
                        +
                        PIO_IOTYPE_NETCDF4P_NCZARR
                        @ PIO_IOTYPE_NETCDF4P_NCZARR
                        NetCDF library (Parallel I/O, NCZarr file format)
                        Definition: pio.h:1222
                        +
                        PIO_IOTYPE_NETCDF4P
                        @ PIO_IOTYPE_NETCDF4P
                        NetCDF library (Parallel I/O, NetCDF4/HDF5 file format)
                        Definition: pio.h:1219
                        +
                        PIO_IOTYPE_HDF5
                        @ PIO_IOTYPE_HDF5
                        HDF5 library (Parallel I/O, NetCDF4/HDF5 file format)
                        Definition: pio.h:1231
                        +
                        PIO_IOTYPE_NETCDF4C
                        @ PIO_IOTYPE_NETCDF4C
                        NetCDF library (Serial I/O, NetCDF4/HDF5 compressed file format)
                        Definition: pio.h:1216
                        +
                        PIO_IOTYPE_HDF5C
                        @ PIO_IOTYPE_HDF5C
                        HDF5 library (Parallel I/O, NetCDF4/HDF5 compressed file format)
                        Definition: pio.h:1234
                        +
                        PIO_IOTYPE_ADIOS
                        @ PIO_IOTYPE_ADIOS
                        ADIOS library (Parallel I/O, ADIOS BP file format)
                        Definition: pio.h:1225
                        +
                        PIO_IOTYPE_ADIOSC
                        @ PIO_IOTYPE_ADIOSC
                        ADIOS library (Parallel I/O, ADIOS BP compressed file format)
                        Definition: pio.h:1228
                        +
                        PIO_IOTYPE_NETCDF
                        @ PIO_IOTYPE_NETCDF
                        NetCDF library (Serial I/O, NetCDF3 classic file format)
                        Definition: pio.h:1213
                        +
                        PIO_IOTYPE_PNETCDF
                        @ PIO_IOTYPE_PNETCDF
                        Parallel NetCDF library (Parallel I/O, NetCDF3 classic file format)
                        Definition: pio.h:1210
                        +
                        PIO_REARRANGERS
                        PIO_REARRANGERS
                        These are the supported output data rearrangement methods.
                        Definition: pio.h:1241
                        +
                        PIO_REARR_BOX
                        @ PIO_REARR_BOX
                        Box rearranger.
                        Definition: pio.h:1243
                        +
                        PIO_REARR_SUBSET
                        @ PIO_REARR_SUBSET
                        Subset rearranger.
                        Definition: pio.h:1246
                        +
                        PIO_REARR_ANY
                        @ PIO_REARR_ANY
                        Let the library choose the rearranger.
                        Definition: pio.h:1249
                        PIO_REARR_COMM_TYPE
                        PIO_REARR_COMM_TYPE
                        Rearranger comm type.
                        Definition: pio.h:441
                        PIO_REARR_COMM_COLL
                        @ PIO_REARR_COMM_COLL
                        Collective.
                        Definition: pio.h:446
                        PIO_REARR_COMM_P2P
                        @ PIO_REARR_COMM_P2P
                        Point to point.
                        Definition: pio.h:443
                        @@ -1199,7 +1199,7 @@
                        -Generated on Wed Apr 8 2026 15:34:16 for SCORPIO by doxygen 1.9.1 +Generated on Thu Apr 9 2026 10:56:44 for SCORPIO by doxygen 1.9.1
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                        -Generated on Wed Apr 8 2026 15:34:16 for SCORPIO by doxygen 1.9.1 +Generated on Thu Apr 9 2026 10:56:44 for SCORPIO by doxygen 1.9.1
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                        -Generated on Wed Apr 8 2026 15:34:16 for SCORPIO by doxygen 1.9.1 +Generated on Thu Apr 9 2026 10:56:44 for SCORPIO by doxygen 1.9.1
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                        -Generated on Wed Apr 8 2026 15:34:16 for SCORPIO by doxygen 1.9.1 +Generated on Thu Apr 9 2026 10:56:44 for SCORPIO by doxygen 1.9.1
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                        -Generated on Wed Apr 8 2026 15:34:16 for SCORPIO by doxygen 1.9.1 +Generated on Thu Apr 9 2026 10:56:44 for SCORPIO by doxygen 1.9.1
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                        -Generated on Wed Apr 8 2026 15:34:16 for SCORPIO by doxygen 1.9.1 +Generated on Thu Apr 9 2026 10:56:44 for SCORPIO by doxygen 1.9.1
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                        -Generated on Wed Apr 8 2026 15:34:16 for SCORPIO by doxygen 1.9.1 +Generated on Thu Apr 9 2026 10:56:44 for SCORPIO by doxygen 1.9.1
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                        diff --git a/docs/html/testpio_example.html b/docs/html/testpio_example.html index 9014915235..0277a6d039 100644 --- a/docs/html/testpio_example.html +++ b/docs/html/testpio_example.html @@ -294,7 +294,7 @@

                        -Generated on Wed Apr 8 2026 15:34:16 for SCORPIO by doxygen 1.9.1 +Generated on Thu Apr 9 2026 10:56:44 for SCORPIO by doxygen 1.9.1
                        diff --git a/src/clib/pio.h b/src/clib/pio.h index 7376373334..af0d35cc1c 100644 --- a/src/clib/pio.h +++ b/src/clib/pio.h @@ -1199,36 +1199,38 @@ typedef struct file_desc_t } file_desc_t; /** - * These are the supported methods of reading/writing netCDF - * files. (Not all methods can be used with all netCDF files.) + * These are the supported methods of reading/writing input/output + * files. The PnetCDF, NetCDF and HDF5 libraries output data in the + * NetCDF file format. The ADIOS library outputs data in the BP file + * format. */ enum PIO_IOTYPE { - /** Parallel Netcdf (parallel) */ + /** Parallel NetCDF library (Parallel I/O, NetCDF3 classic file format) */ PIO_IOTYPE_PNETCDF = 1, - /** Netcdf3 Classic format (serial) */ + /** NetCDF library (Serial I/O, NetCDF3 classic file format) */ PIO_IOTYPE_NETCDF = 2, - /** NetCDF4 (HDF5) compressed format (serial) */ + /** NetCDF library (Serial I/O, NetCDF4/HDF5 compressed file format) */ PIO_IOTYPE_NETCDF4C = 3, - /** NetCDF4 (HDF5) parallel */ + /** NetCDF library (Parallel I/O, NetCDF4/HDF5 file format) */ PIO_IOTYPE_NETCDF4P = 4, - /** NetCDF4 (HDF5) parallel NCZarr */ + /** NetCDF library (Parallel I/O, NCZarr file format) */ PIO_IOTYPE_NETCDF4P_NCZARR = 5, - /** ADIOS parallel */ + /** ADIOS library (Parallel I/O, ADIOS BP file format) */ PIO_IOTYPE_ADIOS = 6, - /** ADIOS parallel with compression */ + /** ADIOS library (Parallel I/O, ADIOS BP compressed file format) */ PIO_IOTYPE_ADIOSC = 7, - /** HDF5 parallel */ + /** HDF5 library (Parallel I/O, NetCDF4/HDF5 file format) */ PIO_IOTYPE_HDF5 = 8, - /** HDF5 parallel with compression */ + /** HDF5 library (Parallel I/O, NetCDF4/HDF5 compressed file format) */ PIO_IOTYPE_HDF5C = 9 };