EAMxx atmchange commands not being appended to CaseStatus or replay.sh

[rljacob]

In the $CASEDIR, the CaseStatus is supposed to be appended anytime an ./xmlchange command is made. ./atmchange commands should also be added.

xmlchanges that are spawned by atmchange seem to be there:

 ---------------------------------------------------
2025-02-24 08:45:57:   Timing files created for run 36192298.250224-084122
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2025-02-24 09:02:47: xmlchange success <command> ./xmlchange --append SCREAM_ATMCHANGE_BUFFER=mac_aero_mic::number_of_subcycles=6-ATMCHANGE_SEP-  </command>

But if an atmchange doesn't have a corresponding xmlchnage, there won't be a record of it.

Similarly, replay.sh should have the commands without the timestamps and dashed lines appended so it can be run to hopefully re-create the case.

./xmlchange --append SCREAM_ATMCHANGE_BUFFER=mac_aero_mic::number_of_subcycles=6-ATMCHANGE_SEP-

./case.submit

./pelayout

./xmlchange --append SCREAM_ATMCHANGE_BUFFER=output_yaml_files+=./my_new_output.yaml-ATMCHANGE_SEP-

./preview_namelists

./case.submit