diff --git a/.github/workflows/ingestion-ci.yml b/.github/workflows/ingestion-ci.yml index 8c0dd311..b4d2301f 100644 --- a/.github/workflows/ingestion-ci.yml +++ b/.github/workflows/ingestion-ci.yml @@ -53,10 +53,11 @@ jobs: # Note: all three files are renamed during the download to trim the "subsample_" prefix - name: Preparing the data run: | - mkdir -p teaseq/ingest/data.dir - curl -o teaseq/ingest/data.dir/adt.h5ad https://figshare.com/ndownloader/files/41671551 - curl -o teaseq/ingest/data.dir/atac.h5ad https://figshare.com/ndownloader/files/41671554 - curl -o teaseq/ingest/data.dir/rna.h5ad https://figshare.com/ndownloader/files/41671557 + mkdir -p teaseq/ingest && cd teaseq/ingest + mkdir data.dir + curl -o data.dir/adt.h5ad https://figshare.com/ndownloader/files/41671551 + curl -o data.dir/atac.h5ad https://figshare.com/ndownloader/files/41671554 + curl -o data.dir/rna.h5ad https://figshare.com/ndownloader/files/41671557 # Note: we run the following to test that the commands works # However, the following task will replacing the file anyway