From 5dda110ce7ce16f3412411bde64a63fe7ccd46f3 Mon Sep 17 00:00:00 2001 From: Wojciech Lason <40389067+wlason@users.noreply.github.com> Date: Wed, 16 Oct 2024 09:22:18 +0100 Subject: [PATCH] fix typo in run_preprocess_prot.py --- panpipes/python_scripts/run_preprocess_prot.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/panpipes/python_scripts/run_preprocess_prot.py b/panpipes/python_scripts/run_preprocess_prot.py index 19b5e7f1..793bac7b 100644 --- a/panpipes/python_scripts/run_preprocess_prot.py +++ b/panpipes/python_scripts/run_preprocess_prot.py @@ -110,7 +110,7 @@ sys.exit("The MuData you specified does not contain rna modality. Cannot run dsb") # the RNA and PROT must intersect - they won't if experimental design included some cells without PROT data - L.info("Checking that only cells with PROT signal present are in the bacground object") + L.info("Checking that only cells with PROT signal present are in the background object") if all_mdata_bg['rna'].shape[0] != all_mdata_bg['prot'].shape[0]: mu.pp.intersect_obs(mdata_bg) all_mdata_bg.update()