diff --git a/panpipes/python_scripts/run_scanpyQC_rna.py b/panpipes/python_scripts/run_scanpyQC_rna.py index b1fca50d..04e8fe5b 100644 --- a/panpipes/python_scripts/run_scanpyQC_rna.py +++ b/panpipes/python_scripts/run_scanpyQC_rna.py @@ -57,7 +57,7 @@ default="mitochondrial,ribosomal", help="which list of genes to use to calc proportion of mapped reads over total,per cell?") parser.add_argument("--score_genes", - default="MarkersNeutro", + default=None, help="which list of genes to use to scanpy.tl.score_genes per cell?") args, opt = parser.parse_known_args()