Major architecture and tooling improvements

- Add Contracts abstraction for shared endpoint definitions
- Implement test coverage analysis infrastructure
- Add SkillDocs directory with comprehensive skill documentation
- Reorganize build scripts to BuildScripts directory
- Update Skills to be build output only (executable/ subdirs are source)
- Add .gitkeep to preserve Skills directory structure
- Update build process to copy SKILL.md from SkillDocs
- Add AgentTestProcedure for comprehensive testing
- Add HelpCommand to CLI
- Switch to framework-dependent deployment for cross-platform support
- Add CodeMarker, CoverageAnalyzer, CoverageParser, CoverageVisualizer, TestRunner
- Refactor workspace management and global server architecture

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>

Author: domesticateddata

.claude/claude-tools.json

@@ -1,8 +1,11 @@
 {
-  "solution": "CyberdyneDevelopment.RoslynTools.sln",
-  "globalServer": "http://localhost:5000",
-  "server": {
-    "port": 5002,
-    "autoStart": true
+  "Solution": "CyberdyneDevelopment.RoslynTools.sln",
+  "GlobalServer": "http://localhost:5000",
+  "Server": {
+    "Port": 5001,
+    "AutoStart": true
+  },
+  "Skills": {
+    "Enabled": []
   }
 }

.claude/settings.local.json

@@ -0,0 +1,13 @@
+{
+  "permissions": {
+    "allow": [
+      "Bash(git log:*)",
+      "Bash(git for-each-ref:*)",
+      "Bash(git push:*)",
+      "Bash(gh api:*)",
+      "Bash(git reset:*)"
+    ],
+    "deny": [],
+    "ask": []
+  }
+}

.gitignore

@@ -63,18 +63,15 @@ nupkg/
 .claude/skills/executables/**/bin/
 .claude/skills/executables/**/obj/
 
-# Skills directory - built artifacts only (keep source in executable/ subdirs)
-Skills/**/*.exe
-Skills/**/*.dll
-Skills/**/*.pdb
-Skills/**/*.xml
-
-# CLI embedded skills - built by create-skill-executables.ps1
-src/CyberdyneDevelopment.RoslynTools.CLI/skills/**/bin/
-src/CyberdyneDevelopment.RoslynTools.CLI/skills/**/obj/
-src/CyberdyneDevelopment.RoslynTools.CLI/skills/**/*.exe
-src/CyberdyneDevelopment.RoslynTools.CLI/skills/**/*.dll
-src/CyberdyneDevelopment.RoslynTools.CLI/skills/**/*.pdb
+# Skills directory - entire folder is build output (source is in SkillDocs/)
+Skills/*
+!Skills/.gitkeep
+
+# TestSolution directory - used for testing only
+TestSolution/
+
+# CLI embedded skills - entire directory is copied during build
+src/CyberdyneDevelopment.RoslynTools.CLI/skills/
 
 # Claude Tools
 .claude-tools/