_toc.yml

# Table of contents
# Learn more at https://jupyterbook.org/customize/toc.html

format: jb-book
root: intro
options:  # The options key will be applied to all chapters, but not sub-sections
  numbered: True
parts:

- caption: Biology of Aging
  numbered: true
  chapters:
  - file: bio/intro_aging_biology

- caption: Statistical analysis
  numbered: true
  chapters:
  - file: stat/differential_analysis_practice
  - file: meth/meth
  - url: https://colab.research.google.com/drive/1mCak-0KTZkISR7ptyBvIOBj1MpewOwDx?usp=sharing
    title: Practice - WGCNA for Methylomics

- caption: Biomarkers of Aging
  numbered: true
  chapters:
  - file: stat/survival_analysis
  - url: https://colab.research.google.com/drive/1Cfm2kqMho_AW9voehcP0F2RkvDOXTGFC?usp=sharing
    title: Practice - Survival analysis with ML
  - file: stat/survival_analysis_part2
    title: Advanced survival analysis
  - url: https://colab.research.google.com/drive/13QFIdNcTIYlApM1FdX2uPru34oZ17JLR?usp=sharing
    title: Practice - Deep survival analysis
  - file: ml/aging_clocks
  - url: https://colab.research.google.com/drive/1h1D35mKJ1-7YlBRW7tLAIO2mviHIAMuj?usp=sharing
    title: Practice - DIY Aging Clocks

- caption: Models of Aging
  numbered: true
  chapters:
  - file: dyn/complex_systems
  - file: dyn/system_resilience

- caption: Student projects 2023
  chapters:
  - file: projects/2023_1
    sections:
    - file: projects/2023/dosi/report
    - file: projects/2023/meta/report
    - file: projects/2023/parkinson/report
    - file: projects/2023/unsupervized/report
  
  - file: projects/2023_2
    sections:
    - file: projects/2023/drugdiscovery/report
    - file: projects/2023/gompertz/report
    - file: projects/2023/levine2013/report
    - file: projects/2023/autogpt/report
    # - file: projects/2023/stochclocks/report
    #