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NAMESPACE
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34 lines (33 loc) · 876 Bytes
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# Generated by roxygen2: do not edit by hand
export(convertToTcrdist)
export(extractTCRdata)
export(generateOLGA)
export(huggingModel)
export(proteinEmbeddings)
export(runClustTCR)
export(runEmbeddings)
export(runHLAassociation)
export(runMetaclonotypist)
export(runOLGA)
export(runSoNNia)
export(runTCRdist)
export(summarizeTCRrepertoire)
export(tokenizeSequences)
export(validateTCRdata)
exportClasses(TCR_summary)
exportMethods(show)
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,colData)
importFrom(immApex,getIR)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,setClass)
importFrom(methods,setMethod)
importFrom(methods,show)
importFrom(reticulate,array_reshape)
importFrom(reticulate,import)
importFrom(reticulate,py_to_r)
importFrom(stats,median)
importFrom(stats,sd)
importFrom(utils,head)
importFrom(utils,write.csv)