Ibex/NAMESPACE at main · BorchLab/Ibex · GitHub

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# Generated by roxygen2: do not edit by hand

export(CoNGAfy)
export(Ibex_matrix)
export(combineExpandedBCR)
export(runIbex)
import(basilisk)
importFrom(Matrix,colSums)
importFrom(Matrix,sparse.model.matrix)
importFrom(SeuratObject,CreateAssayObject)
importFrom(SeuratObject,CreateDimReducObject)
importFrom(SeuratObject,CreateSeuratObject)
importFrom(SeuratObject,GetAssayData)
importFrom(SingleCellExperiment,"altExp<-")
importFrom(SingleCellExperiment,"reducedDim<-")
importFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(SingleCellExperiment,altExp)
importFrom(SingleCellExperiment,colData)
importFrom(SingleCellExperiment,reducedDim)
importFrom(SummarizedExperiment,"assay<-")
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,colData)
importFrom(basilisk,basiliskRun)
importFrom(immApex,geometricEncoder)
importFrom(immApex,getIR)
importFrom(immApex,onehotEncoder)
importFrom(immApex,propertyEncoder)
importFrom(methods,is)
importFrom(methods,slot)
importFrom(rlang,"%||%")
importFrom(scRepertoire,combineBCR)
importFrom(stats,as.formula)
importFrom(stats,dist)
importFrom(stats,na.omit)
importFrom(tensorflow,tf)
importFrom(tools,R_user_dir)
importFrom(utils,download.file)
importFrom(utils,read.csv)