Describe the bug
The StringDB annotator used to be able to work with non-human data, but since recently it only returns the error 'UserWarning: There is no interaction between your input list based on StringDB.', even when using data that used to work before.
To Reproduce
These are the identifiers I used to test the annotator.
ENSMUSG00000067274 - (rplp0)
ENSMUSG00000003429 - (rps11)
ENSMUSG00000000740 - (rpl13)
ENSMUSG00000017548 - (rpl19)
Then regularly call the function:
ppi_df, ppi_metadata = stringdb.get_ppi(bridgedb_df=bridgedb_df, species="Mouse")
This will produce the error mentioned above, even though when viewed in the online String database, there should be ppi's here.
Describe the bug
The StringDB annotator used to be able to work with non-human data, but since recently it only returns the error 'UserWarning: There is no interaction between your input list based on StringDB.', even when using data that used to work before.
To Reproduce
These are the identifiers I used to test the annotator.
ENSMUSG00000067274 - (rplp0)
ENSMUSG00000003429 - (rps11)
ENSMUSG00000000740 - (rpl13)
ENSMUSG00000017548 - (rpl19)
Then regularly call the function:
ppi_df, ppi_metadata = stringdb.get_ppi(bridgedb_df=bridgedb_df, species="Mouse")
This will produce the error mentioned above, even though when viewed in the online String database, there should be ppi's here.