MolMeDB RDF query update for new schema (#267)

Co-authored-by: DominikMartinat <darth@darth.localdomain>
Co-authored-by: Yojana Gadiya <45199062+YojanaGadiya@users.noreply.github.com>

Author: 3 people

src/pyBiodatafuse/annotators/queries/molmedb-transporters-inhibited-by-molecule.rq

@@ -20,7 +20,8 @@ VALUES ?inhibitorInChIKey { $inhibitor_list }
     								sio:SIO_000008 [ sio:SIO_000300 ?uniprot_trembl_id];
                                      rdfs:label ?hgcn_id;
 									];
-                    bao:BAO_0000208 [rdf:type mmdbvoc:InhibitionAssay;
-                                     sio:SIO_000300 repr:PositiveResult].
+                    bao:BAO_0000208 [^bao:BAO_0095000 [rdf:type mmdbvoc:InhibitionAssay;
+                                                       sio:SIO_000300 repr:PositiveResult]].
   ?ref bibo:pmid ?source_pmid
+  OPTIONAL {?ref bibo:doi ?source_doi}
 }

src/pyBiodatafuse/annotators/queries/molmedb-transporters-inhibitors.rq

@@ -20,16 +20,17 @@ WHERE {
                     bao:BAO_0090012 ?transporter ;
                     bao:BAO_0000426 [dcterms:references	?ref] ;
                     bao:BAO_0090012 ?inhibitor ;
-                    bao:BAO_0000208 [rdf:type mmdbvoc:InhibitionAssay;
-                                     sio:SIO_000300 repr:PositiveResult].
+                    bao:BAO_0000208 [^bao:BAO_0095000 [rdf:type mmdbvoc:InhibitionAssay;
+                                                       sio:SIO_000300 repr:PositiveResult]].
   ?inhibitor rdf:type bao:BAO_0000076;
              rdfs:label ?label;
              sio:SIO_000008 [rdf:type sio:CHEMINF_000059;
                              sio:SIO_000300 ?InChIKey];
              sio:SIO_000008 [rdf:type sio:CHEMINF_000018;
                              sio:SIO_000300 ?SMILES].             
   ?ref bibo:pmid ?source_pmid
-  OPTIONAL {?inhibitor sio:SIO_000008 [rdf:type sio:CHEMINF_000421;
+  OPTIONAL {?ref bibo:doi ?source_doi}
+  OPTIONAL {?inhibitor sio:SIO_000008 [rdf:type sio:CHEMINF_000412;
                              sio:SIO_000300 ?chembl_id]}
   OPTIONAL {?inhibitor sio:SIO_000008 [rdf:type sio:CHEMINF_000407;
                              sio:SIO_000300 ?chebi_id]}