Use case and database selection

[jmillanacosta]

We decided to use interesting* use cases based on SSSOM availability.

Interesting: annotators that took

• Very little work to write
• Medium amount of work to write
• Large amount of work to write

[DominikMartinat]

Some resources providing SSSOM mappings.

• SSSOM repo examples
• Biomappings - "Biomappings is a repository of community curated and predicted equivalences and related mappings between named biological entities that are not available from primary sources."
• OLS mapping extracted from described ontologies

[jmillanacosta]

Resources chosen:

• PDB
• UP
• Bgee
• Uberon
  Identify rdfconfig links between these resources.
  Identify live SPARQL endpoints.
  Come up with
  a) Simple biological question (2 dbs)
  b) Complicated biological question (>2dbs)