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singlecell/src/org/labkey/singlecell/pipeline/singlecell/ApplyKnownClonotypicData.java

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@@ -22,14 +22,12 @@ public Provider()
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super("ApplyKnownClonotypicData", "Append Known Clonotype/Antigen Data", "RDiscvr", "This will query the clone_responses table and append a column tagging each cell for matching antigens (based on clonotype)", List.of(
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SeuratToolParameter.create("antigenInclusionList", "Antigen(s) to Include", "Enter antigens, per line. Only stims using these antigens will be used", "sequenceanalysis-trimmingtextarea", new JSONObject()
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{{
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put("allowBlank", false);
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put("height", 150);
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put("delimiter", ",");
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put("stripCharsRe", "/['\"]/g");
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}}, null, null, true, true).delimiter(","),
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SeuratToolParameter.create("antigenExclusionList", "Antigen(s) to Exclude", "Enter antigens, per line. Stims using these antigens will be excluded", "sequenceanalysis-trimmingtextarea", new JSONObject()
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{{
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put("allowBlank", false);
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put("height", 150);
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put("delimiter", ",");
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put("stripCharsRe", "/['\"]/g");

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