OmicsKit/NAMESPACE at main · BigMindLab/OmicsKit · GitHub

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# Generated by roxygen2: do not edit by hand

S3method(print,circos_genome)
S3method(print,get_glm_result)
export(add_annotations)
export(addgenesPA)
export(concordanceDE)
export(crossLayerCorr)
export(detect_filter)
export(do_clust)
export(geneset_similarity)
export(get_annotations)
export(get_cox)
export(get_glm)
export(get_network_communities)
export(get_stars)
export(get_superterm)
export(getgenesPA)
export(heatmap_PA)
export(heatmap_path_PA)
export(is_circos_genome)
export(list_ensembl_species)
export(list_ensembl_versions)
export(list_gmts)
export(merge_PA)
export(multiplot_PA)
export(network_clust)
export(network_clust_gg)
export(nice_ConcordanceScatter)
export(nice_GenomeTrack)
export(nice_KM)
export(nice_PCA)
export(nice_ROC)
export(nice_UMAP)
export(nice_VSB)
export(nice_VSB_DEseq2)
export(nice_Volcano)
export(nice_circos)
export(nice_forest)
export(nice_tSNE)
export(power_analysis)
export(resolve_genome)
export(save_results)
export(split_cases)
export(splot_PA)
export(tpm)
export(trend_filter)
import(ggplot2)
importFrom(S4Vectors,"mcols<-")
importFrom(S4Vectors,mcols)
importFrom(broom,tidy)
importFrom(dplyr,bind_rows)
importFrom(dplyr,case_when)
importFrom(dplyr,filter)
importFrom(dplyr,mutate)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(ggplot2,aes)
importFrom(ggplot2,annotate)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_abline)
importFrom(ggplot2,geom_errorbar)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_x_log10)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,theme_minimal)
importFrom(grDevices,adjustcolor)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grid,gpar)
importFrom(magrittr,"%>%")
importFrom(pROC,auc)
importFrom(pROC,ci.auc)
importFrom(pROC,roc)
importFrom(pROC,roc.test)
importFrom(pROC,smooth)
importFrom(patchwork,plot_layout)
importFrom(rlang,.data)
importFrom(stats,AIC)
importFrom(stats,as.formula)
importFrom(stats,complete.cases)
importFrom(stats,glm)
importFrom(stats,na.omit)
importFrom(stats,nobs)
importFrom(stats,p.adjust)
importFrom(stats,predict)
importFrom(stats,relevel)
importFrom(stats,setNames)
importFrom(survival,Surv)
importFrom(survival,coxph)
importFrom(tibble,tibble)
importFrom(tools,file_ext)
importFrom(utils,modifyList)