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Failure to execute tutorials #499

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pmehta08 opened this issue Feb 19, 2025 · 1 comment
Open

Failure to execute tutorials #499

pmehta08 opened this issue Feb 19, 2025 · 1 comment

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@pmehta08
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I tried running all the example files listed at these two links with gssa, ee and gsl(default)

https://moose.ncbs.res.in/readthedocs/user/py/tutorials/ChemicalOscillators.html and
https://moose.ncbs.res.in/readthedocs/user/py/tutorials/ChemicalBistables.html

Failure to run following examples:

  1. With gsl -
    mapkfb.py was not executed, the error message is :
    Error: VoxelPools::advance: GSL integration error at time 60
    Error info: -1, failure

  2. With ee -
    KholodenskoOSc, repressillator, relaxationOsc, strongBis failed to produce the expected graphical o/p. See attached

  3. With gssa -
    KholodenskoOSc failed to produce the expected graphical o/p. See attached

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@subhacom
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subhacom commented Feb 27, 2025

For future issues: Please make one report for a single issue. Please do not merge multiple issues in a single issue report.

  1. Cannot reproduce the issue. Works as expected on my system.
  2. Confirmed. @upibhalla has the ee solver been removed for chemical kinetics models? Then we should remove ee as an option for loadModel..
  3. The tutorial text already says "The model does not really play nicely with the GSSA solver, since it involves some really tiny amounts of the MAPKKK." Update the code to raise an exception with this message.

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