Until now, we had the issue that we could not activate a certain micromamba environment when executing a bash script. This environment had to be activated beforehand. This can be fixed by adding the following lines before the eval and micromamba activate lines, and adapting the eval line accordingly:
export MAMBA_EXE="/data/ucct/bi/pipelines/micromamba/bin/micromamba"
export MAMBA_ROOT_PREFIX="/data/ucct/bi/pipelines/micromamba"
eval "$($MAMBA_EXE shell hook --shell bash)"
Until now, we had the issue that we could not activate a certain micromamba environment when executing a bash script. This environment had to be activated beforehand. This can be fixed by adding the following lines before the eval and micromamba activate lines, and adapting the eval line accordingly: