Issues

• h5 files are not allowed in inference mode

  BIMSBbioinfo/flexynesis#151 · Filter by author borauyar opened on Aug 12, 2026

• Invalid Notebook — missing image attachments

  BIMSBbioinfo/flexynesis#149 · Filter by author asarigun opened on Jun 19, 2026
  2

  

• Add beeswarm plot

  BIMSBbioinfo/flexynesis#144 · Filter by author nilchia opened on Apr 14, 2026
  2

  

• doctest failures

  BIMSBbioinfo/flexynesis#93 · Filter by author rekado opened on Nov 20, 2024

• feature importance metrics for unsupervised models

  BIMSBbioinfo/flexynesis#90 · Filter by author borauyar opened on Aug 30, 2024

• add evaluation metrics for cross-modality networks and autoencoders

  BIMSBbioinfo/flexynesis#89 · Filter by author borauyar opened on Aug 22, 2024

• Implement intermediate fusion for GNNs

  enhancement
  BIMSBbioinfo/flexynesis#88 · Filter by author borauyar opened on Aug 12, 2024
  

• Handle NA values during HPO

  BIMSBbioinfo/flexynesis#84 · Filter by author borauyar opened on Jul 10, 2024

• print sample clustering by default

  BIMSBbioinfo/flexynesis#76 · Filter by author borauyar opened on May 6, 2024

• graph import fails if different omics data has differing gene name/id conventions

  BIMSBbioinfo/flexynesis#67 · Filter by author borauyar opened on Mar 15, 2024
  

• Check for mismatches between label categories in train/test

  BIMSBbioinfo/flexynesis#66 · Filter by author borauyar opened on Mar 14, 2024

• Feature Request: Prevent features/nodes with high degree but low laplacian score from being removed in GNN setup

  enhancement
  BIMSBbioinfo/flexynesis#63 · Filter by author tarasio-mirror opened on Mar 5, 2024

• Enable support for .tsv files

  enhancement
  BIMSBbioinfo/flexynesis#43 · Filter by author frenkiboy opened on Feb 6, 2024