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clm-base.owl
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<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/clm/clm-base.owl#"
xml:base="http://purl.obolibrary.org/obo/clm/clm-base.owl"
xmlns:dce="http://purl.org/dc/elements/1.1/"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:dcterms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/clm/clm-base.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/clm/releases/2024-07-31/clm-base.owl"/>
<dce:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
<dcterms:description>None</dcterms:description>
<dcterms:license rdf:resource="https://creativecommons.org/licenses/unspecified"/>
<dcterms:title>Cell Markers Ontology</dcterms:title>
<owl:versionInfo>2024-07-31</owl:versionInfo>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/RO_0002175 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002175"/>
<!-- http://purl.obolibrary.org/obo/STATO_0000663 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/STATO_0000663"/>
<!-- http://purl.org/dc/elements/1.1/type -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/type"/>
<!-- http://purl.org/dc/terms/description -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/description">
<rdfs:label>description</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/terms/license -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/license">
<rdfs:label>license</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/terms/title -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/title">
<rdfs:label>title</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasDbXref -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDbXref"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000051 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000051"/>
<!-- http://purl.obolibrary.org/obo/RO_0015004 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0015004">
<rdfs:label>has characterizing marker set</rdfs:label>
</owl:ObjectProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://identifiers.org/ensembl/ENSG00000038945 -->
<owl:Class rdf:about="http://identifiers.org/ensembl/ENSG00000038945"/>
<!-- http://identifiers.org/ensembl/ENSG00000050730 -->
<owl:Class rdf:about="http://identifiers.org/ensembl/ENSG00000050730"/>
<!-- http://identifiers.org/ensembl/ENSG00000100292 -->
<owl:Class rdf:about="http://identifiers.org/ensembl/ENSG00000100292"/>
<!-- http://identifiers.org/ensembl/ENSG00000131471 -->
<owl:Class rdf:about="http://identifiers.org/ensembl/ENSG00000131471"/>
<!-- http://identifiers.org/ensembl/ENSG00000139329 -->
<owl:Class rdf:about="http://identifiers.org/ensembl/ENSG00000139329"/>
<!-- http://identifiers.org/ensembl/ENSG00000163735 -->
<owl:Class rdf:about="http://identifiers.org/ensembl/ENSG00000163735"/>
<!-- http://identifiers.org/ensembl/ENSG00000164120 -->
<owl:Class rdf:about="http://identifiers.org/ensembl/ENSG00000164120"/>
<!-- http://identifiers.org/ensembl/ENSG00000168079 -->
<owl:Class rdf:about="http://identifiers.org/ensembl/ENSG00000168079"/>
<!-- http://identifiers.org/ensembl/ENSG00000170323 -->
<owl:Class rdf:about="http://identifiers.org/ensembl/ENSG00000170323"/>
<!-- http://identifiers.org/ensembl/ENSG00000174807 -->
<owl:Class rdf:about="http://identifiers.org/ensembl/ENSG00000174807"/>
<!-- http://purl.obolibrary.org/obo/CLM_0000000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CLM_0000000"/>
<!-- http://purl.obolibrary.org/obo/CL_0000583 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000583">
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0015004"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CL_4037003"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:RO_0002175 rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<rdfs:comment>A alveolar macrophage in the Human Lung has the gene markers MSR1, FABP4 with a NS-Forest FBeta value of 0.8.</rdfs:comment>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CL_0000583"/>
<owl:annotatedProperty rdf:resource="http://www.w3.org/2000/01/rdf-schema#comment"/>
<owl:annotatedTarget>A alveolar macrophage in the Human Lung has the gene markers MSR1, FABP4 with a NS-Forest FBeta value of 0.8.</owl:annotatedTarget>
<oboInOwl:hasDbXref>https://doi.org/10.5281/zenodo.11165918</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/CL_4028004 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_4028004">
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0015004"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CL_4037002"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:RO_0002175 rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<rdfs:comment>A alveolar type 1 fibroblast cell in the Human Lung has the gene markers AOC3, LUM with a NS-Forest FBeta value of 0.7.</rdfs:comment>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CL_4028004"/>
<owl:annotatedProperty rdf:resource="http://www.w3.org/2000/01/rdf-schema#comment"/>
<owl:annotatedTarget>A alveolar type 1 fibroblast cell in the Human Lung has the gene markers AOC3, LUM with a NS-Forest FBeta value of 0.7.</owl:annotatedTarget>
<oboInOwl:hasDbXref>https://doi.org/10.5281/zenodo.11165918</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/CL_4028006 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_4028006">
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0015004"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CL_4037001"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:RO_0002175 rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<rdfs:comment>A alveolar adventitial fibroblast in the Human Lung has the gene markers SCARA5, CD248 with a NS-Forest FBeta value of 0.85.</rdfs:comment>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CL_4028006"/>
<owl:annotatedProperty rdf:resource="http://www.w3.org/2000/01/rdf-schema#comment"/>
<owl:annotatedTarget>A alveolar adventitial fibroblast in the Human Lung has the gene markers SCARA5, CD248 with a NS-Forest FBeta value of 0.85.</owl:annotatedTarget>
<oboInOwl:hasDbXref>https://doi.org/10.5281/zenodo.11165918</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/CL_4033041 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_4033041">
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0015004"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CL_4037004"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:RO_0002175 rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<rdfs:comment>A CCL3-positive alveolar macrophage in the Human Lung has the gene markers TNIP3, CXCL5 with a NS-Forest FBeta value of 0.67.</rdfs:comment>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CL_4033041"/>
<owl:annotatedProperty rdf:resource="http://www.w3.org/2000/01/rdf-schema#comment"/>
<owl:annotatedTarget>A CCL3-positive alveolar macrophage in the Human Lung has the gene markers TNIP3, CXCL5 with a NS-Forest FBeta value of 0.67.</owl:annotatedTarget>
<oboInOwl:hasDbXref>https://doi.org/10.5281/zenodo.11165918</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/CL_4033042 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_4033042">
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0015004"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CL_4037005"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:RO_0002175 rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<rdfs:comment>A metallothionein-positive alveolar macrophage in the Human Lung has the gene markers HMOX1, HPGD with a NS-Forest FBeta value of 0.41.</rdfs:comment>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CL_4033042"/>
<owl:annotatedProperty rdf:resource="http://www.w3.org/2000/01/rdf-schema#comment"/>
<owl:annotatedTarget>A metallothionein-positive alveolar macrophage in the Human Lung has the gene markers HMOX1, HPGD with a NS-Forest FBeta value of 0.41.</owl:annotatedTarget>
<oboInOwl:hasDbXref>https://doi.org/10.5281/zenodo.11165918</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/CL_4037001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_4037001">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/SO_0001260"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://identifiers.org/ensembl/ENSG00000168079"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://identifiers.org/ensembl/ENSG00000174807"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<obo:STATO_0000663>0.85</obo:STATO_0000663>
<rdfs:label>NS forest marker set of alveolar adventitial fibroblast (Human Lung).</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CL_4037002 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_4037002">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/SO_0001260"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://identifiers.org/ensembl/ENSG00000131471"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://identifiers.org/ensembl/ENSG00000139329"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<obo:STATO_0000663>0.7</obo:STATO_0000663>
<rdfs:label>NS forest marker set of alveolar type 1 fibroblast cell (Human Lung).</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CL_4037003 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_4037003">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/SO_0001260"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://identifiers.org/ensembl/ENSG00000038945"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://identifiers.org/ensembl/ENSG00000170323"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<obo:STATO_0000663>0.8</obo:STATO_0000663>
<rdfs:label>NS forest marker set of alveolar macrophage (Human Lung).</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CL_4037004 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_4037004">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/SO_0001260"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://identifiers.org/ensembl/ENSG00000050730"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://identifiers.org/ensembl/ENSG00000163735"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<obo:STATO_0000663>0.67</obo:STATO_0000663>
<rdfs:label>NS forest marker set of CCL3-positive alveolar macrophage (Human Lung).</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CL_4037005 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_4037005">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/SO_0001260"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://identifiers.org/ensembl/ENSG00000100292"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://identifiers.org/ensembl/ENSG00000164120"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<obo:STATO_0000663>0.41</obo:STATO_0000663>
<rdfs:label>NS forest marker set of metallothionein-positive alveolar macrophage (Human Lung).</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/SO_0001260 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/SO_0001260"/>
</rdf:RDF>
<!-- Generated by the OWL API (version 4.5.29) https://github.com/owlcs/owlapi -->