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program_modules.py
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197 lines (181 loc) · 6.04 KB
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""" helpers for importing and managing program modules
"""
import importlib
from elstruct import par
from elstruct import pclass
# Functions to import and call the appropriate writer function
def call_module_function(prog, function, *args, **kwargs):
""" call the module implementation of a given function
:param prog: the program
:type prog: str
:param function_template: a function with the desired signature
:type function_template: function
"""
def _rename_prog(prog):
""" Rename a program if number does not match module name """
if prog in ('molpro2021', 'molpro2021_mppx'):
prog = 'molpro2015'
elif prog in ('gaussian03'):
prog = 'gaussian09'
elif prog.startswith('ase'):
prog = 'ase'
return prog
new_name = _rename_prog(prog)
assert new_name in pclass.values(par.Program), (
f"The program '{new_name}' is not in the supported list of programs; "
f"options are {pclass.values(par.Program)}")
assert new_name in program_modules_with_function(function), (
f"The function '{function}' is not in the supported list of functions"
f" for the program '{new_name}'; programs with this function are "
f"{program_modules_with_function(function)}")
name = f'_{_rename_prog(prog)}'
module = importlib.import_module(f'elstruct.reader.{name:s}')
reader = getattr(module, function)
return reader(*args, **kwargs)
def program_modules_with_function(function):
"""
:param function: a function with the desired signature
:type function: function
"""
progs = []
for prog in pclass.values(par.Program):
if function in READER_MODULE_DCT[prog]:
progs.append(prog)
return progs
# Information on what writers have been implemented
class Job():
""" Names of electronic structure jobs to ne written
"""
ENERGY = 'energy'
GRADIENT = 'gradient'
HESSIAN = 'hessian'
HARM_FREQS = 'harmonic_frequencies'
NORM_COORDS = 'normal_coordinates'
IRC_PTS = 'irc_points'
IRC_PATH = 'irc_path'
OPT_GEO = 'opt_geometry'
OPT_ZMA = 'opt_zmatrix'
OPT_ZMAS = 'opt_zmatrices'
INP_ZMA = 'inp_zmatrix'
VPT2 = 'vpt2'
DIP_MOM = 'dipole_moment'
POLAR = 'polarizability'
EXIT_MSG = 'has_normal_exit_message'
ERR_LST = 'error_list'
SUCCESS_LST = 'success_list'
ERR_MSG = 'has_error_message'
CONV_MSG = 'check_convergence_messages'
PROG_NAME = 'program_name'
PROG_VERS = 'program_version'
# Dictionaries that dictate what writer/reader functionality
READER_MODULE_DCT = {
par.Program.ASE: (
Job.ENERGY, Job.GRADIENT,
Job.OPT_GEO, Job.OPT_ZMA,
Job.EXIT_MSG, Job.ERR_LST, Job.SUCCESS_LST,
Job.ERR_MSG, Job.CONV_MSG,
Job.PROG_NAME, Job.PROG_VERS
),
par.Program.ASE_PSI4: (
Job.ENERGY, Job.GRADIENT,
Job.OPT_GEO, Job.OPT_ZMA,
Job.EXIT_MSG, Job.ERR_LST, Job.SUCCESS_LST,
Job.ERR_MSG, Job.CONV_MSG,
Job.PROG_NAME, Job.PROG_VERS
),
par.Program.ASE_NWX: (
Job.ENERGY, Job.GRADIENT,
Job.OPT_GEO, Job.OPT_ZMA,
Job.EXIT_MSG, Job.ERR_LST, Job.SUCCESS_LST,
Job.ERR_MSG, Job.CONV_MSG,
Job.PROG_NAME, Job.PROG_VERS
),
par.Program.CFOUR2: (
Job.ENERGY, Job.GRADIENT,
Job.OPT_GEO, Job.OPT_ZMA,
Job.EXIT_MSG, Job.ERR_LST, Job.SUCCESS_LST,
Job.ERR_MSG, Job.CONV_MSG,
Job.PROG_NAME, Job.PROG_VERS
),
par.Program.GAUSSIAN09: (
Job.ENERGY, Job.GRADIENT,
Job.HESSIAN, Job.HARM_FREQS, Job.NORM_COORDS,
Job.IRC_PTS, Job.IRC_PATH,
Job.OPT_GEO, Job.OPT_ZMA, Job.OPT_ZMAS, Job.INP_ZMA,
Job.VPT2,
Job.DIP_MOM, Job.POLAR,
Job.EXIT_MSG, Job.ERR_LST, Job.SUCCESS_LST,
Job.ERR_MSG, Job.CONV_MSG,
Job.PROG_NAME, Job.PROG_VERS
),
par.Program.GAUSSIAN03: (
Job.ENERGY, Job.GRADIENT,
Job.HESSIAN, Job.HARM_FREQS, Job.NORM_COORDS,
Job.IRC_PTS, Job.IRC_PATH,
Job.OPT_GEO, Job.OPT_ZMA, Job.INP_ZMA,
Job.VPT2,
Job.DIP_MOM, Job.POLAR,
Job.EXIT_MSG, Job.ERR_LST, Job.SUCCESS_LST,
Job.ERR_MSG, Job.CONV_MSG,
Job.PROG_NAME, Job.PROG_VERS
),
par.Program.GAUSSIAN16: (
Job.ENERGY, Job.GRADIENT,
Job.HESSIAN, Job.HARM_FREQS, Job.NORM_COORDS,
Job.IRC_PTS, Job.IRC_PATH,
Job.OPT_GEO, Job.OPT_ZMA, Job.INP_ZMA,
Job.VPT2,
Job.DIP_MOM, Job.POLAR,
Job.EXIT_MSG, Job.ERR_LST, Job.SUCCESS_LST,
Job.ERR_MSG, Job.CONV_MSG,
Job.PROG_NAME, Job.PROG_VERS
),
par.Program.MOLPRO2015: (
Job.ENERGY, Job.GRADIENT,
Job.HESSIAN, Job.HARM_FREQS, Job.NORM_COORDS,
Job.OPT_GEO, Job.OPT_ZMA, Job.INP_ZMA,
Job.EXIT_MSG, Job.ERR_LST,
Job.ERR_MSG, Job.CONV_MSG,
Job.PROG_NAME, Job.PROG_VERS
),
par.Program.MOLPRO2021: (
Job.ENERGY, Job.GRADIENT,
Job.HESSIAN, Job.HARM_FREQS, Job.NORM_COORDS,
Job.OPT_GEO, Job.OPT_ZMA,
Job.EXIT_MSG, Job.ERR_LST,
Job.ERR_MSG, Job.CONV_MSG,
Job.PROG_NAME, Job.PROG_VERS
),
par.Program.MRCC2018: (
Job.ENERGY, Job.GRADIENT,
Job.DIP_MOM,
Job.EXIT_MSG, Job.ERR_LST,
Job.ERR_MSG, Job.CONV_MSG,
Job.PROG_NAME, Job.PROG_VERS
),
par.Program.NWCHEM6: (
Job.ENERGY, Job.GRADIENT,
Job.OPT_GEO,
Job.PROG_NAME, Job.PROG_VERS
),
par.Program.ORCA4: (
Job.ENERGY, Job.GRADIENT,
Job.HESSIAN,
Job.OPT_GEO,
Job.DIP_MOM,
Job.EXIT_MSG, Job.ERR_LST,
Job.ERR_MSG, Job.CONV_MSG,
Job.PROG_NAME, Job.PROG_VERS
),
par.Program.PSI4: (
Job.ENERGY, Job.GRADIENT,
Job.HESSIAN, Job.HARM_FREQS,
Job.IRC_PTS, Job.IRC_PATH,
Job.OPT_GEO, Job.OPT_ZMA, Job.INP_ZMA,
Job.DIP_MOM, Job.POLAR,
Job.EXIT_MSG, Job.ERR_LST,
Job.ERR_MSG, Job.CONV_MSG,
Job.PROG_NAME, Job.PROG_VERS
),
par.Program.QCHEM5: ()
}