upversion semantics

Author: gkennos

CHANGELOG.md

@@ -33,4 +33,7 @@
 - created initial episode views for disease eps
 
 ## 0.2.3
-- added eps as module
+- added eps as module
+
+## 0.2.4 
+- upversion semantics

pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "omop-constructs"
-version = "0.2.3"
+version = "0.2.4"
 description = "For building complex constructs on top of the omop-alchemy library."
 readme = "README.md"
 authors = [
@@ -9,7 +9,7 @@ authors = [
 requires-python = ">=3.12"
 dependencies = [
     "omop-alchemy>=0.5.12",
-    "omop-semantics>=0.1.8",
+    "omop-semantics>=0.1.10",
     "psycopg2-binary>=2.9.11",
     "sqlalchemy>=2.0.45",
     "urllib3>=2.6.3",

src/omop_constructs/alchemy/conditions/__init__.py

@@ -0,0 +1,7 @@
+from .condition_joins import condition_window
+from .condition_mappers import Condition_Window
+
+__all__ = [
+    "condition_window",
+    "Condition_Window"
+]

src/omop_constructs/alchemy/episodes/episode_factories.py

@@ -76,18 +76,18 @@ def get_episode_hierarchy_query(
 
     return (
         sa.select(
-            parent_episode_subq.c.episode_id.label("parent_episode_id"),
+            parent_episode_subq.c.episode_id.label("disease_episode_id"),
             parent_episode_subq.c.person_id.label("person_id"),
-            parent_episode_subq.c.episode_concept_id.label("parent_episode_concept_id"),
-            parent_episode_subq.c.episode_label.label("parent_episode_label"),
-            parent_episode_subq.c.episode_start_date.label("parent_start_date"),
-            parent_episode_subq.c.episode_end_date.label("parent_end_date"),
+            parent_episode_subq.c.episode_concept_id.label("disease_episode_concept_id"),
+            parent_episode_subq.c.episode_label.label("disease_episode_label"),
+            parent_episode_subq.c.episode_start_date.label("disease_episode_start_date"),
+            parent_episode_subq.c.episode_end_date.label("disease_episode_end_date"),
 
-            child_episode_subq.c.episode_id.label("child_episode_id"),
-            child_episode_subq.c.episode_concept_id.label("child_episode_concept_id"),
-            child_episode_subq.c.episode_label.label("child_episode_label"),
-            child_episode_subq.c.episode_start_date.label("child_start_date"),
-            child_episode_subq.c.episode_end_date.label("child_end_date"),
+            child_episode_subq.c.episode_id.label("extent_episode_id"),
+            child_episode_subq.c.episode_concept_id.label("extent_episode_concept_id"),
+            child_episode_subq.c.episode_label.label("extent_episode_label"),
+            child_episode_subq.c.episode_start_date.label("extent_start_date"),
+            child_episode_subq.c.episode_end_date.label("extent_end_date"),
         )
         .join(
             child_episode_subq,

src/omop_constructs/alchemy/episodes/episode_joins.py

@@ -3,14 +3,14 @@
 
 episode_of_care_select = require_condition_anchor(
     get_episode_query(
-        [runtime.episodes.disease_episode_types.episode_of_care],  # type: ignore
+        [runtime.types.disease_episode_types.episode_of_care],  # type: ignore
         name="episode_of_care"
     )
 )
 
 disease_extent_select = require_condition_anchor(
     get_episode_query(
-        [runtime.episodes.disease_episode_types.metastatic, runtime.episodes.disease_episode_types.disease_progression],  # type: ignore
+        [runtime.types.disease_episode_types.disease_progression, runtime.types.disease_episode_types.metastatic],  # type: ignore
         name="disease_extent"
     )
 )