omop-constructs/.github/workflows/tests.yml at main · AustralianCancerDataNetwork/omop-constructs · GitHub

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name: Tests

on:
  pull_request:
  workflow_call:

jobs:
  pytest:
    name: Pytest
    runs-on: ubuntu-latest

    steps:
      - uses: actions/checkout@v4

      - uses: actions/setup-python@v5
        with:
          python-version: "3.12"

      - uses: astral-sh/setup-uv@v4

      - name: Install dependencies
        run: uv sync --extra dev --frozen

      - name: Run non-Postgres tests
        run: uv run pytest -m "not postgres" -v

  pytest-postgres:
    name: Pytest Postgres
    runs-on: ubuntu-latest

    services:
      postgres:
        image: postgres:16
        env:
          POSTGRES_DB: omop_constructs_ci
          POSTGRES_USER: omop_constructs
          POSTGRES_PASSWORD: omop_constructs
        ports:
          - 5432:5432
        options: >-
          --health-cmd "pg_isready -U omop_constructs -d omop_constructs_ci"
          --health-interval 10s
          --health-timeout 5s
          --health-retries 5

    env:
      ENGINE_CDM: postgresql+psycopg://omop_constructs:omop_constructs@127.0.0.1:5432/omop_constructs_ci
      ENGINE: postgresql+psycopg://omop_constructs:omop_constructs@127.0.0.1:5432/omop_constructs_ci

    steps:
      - uses: actions/checkout@v4

      - uses: actions/setup-python@v5
        with:
          python-version: "3.12"

      - uses: astral-sh/setup-uv@v4

      - name: Install dependencies
        run: uv sync --extra dev --frozen

      - name: Run Postgres tests
        run: uv run pytest -m postgres -v