diff --git a/src/ontology/apollo_sv-edit.owl b/src/ontology/apollo_sv-edit.owl index 0c0f84f..7b503c4 100644 --- a/src/ontology/apollo_sv-edit.owl +++ b/src/ontology/apollo_sv-edit.owl @@ -1545,7 +1545,7 @@ AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000325 "URI creation date"@en) AnnotationAssertion(obo:IAO_0000111 obo:APOLLO_SV_00000329 "author list"@en) AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000329 "William R. Hogan"@en) -AnnotationAssertion(rdfs:comment obo:APOLLO_SV_00000329 "an annotation property for capturing the list of authors on the publication or other document to which the entity to which the annotation is attached refers. That is, this annotation should be attached only to individuals that represent information content entities, and its values must denote the people that authored the ICE."@en) +AnnotationAssertion(rdfs:comment obo:APOLLO_SV_00000329 "An annotation property for capturing the list of authors on the publication or other document to which the entity to which the annotation is attached refers. That is, this annotation should be attached only to individuals that represent information content entities, and its values must denote the people that authored the ICE."@en) AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000329 "author list "@en) # Annotation Property: obo:APOLLO_SV_00000488 (source code repository URL) @@ -1591,7 +1591,7 @@ AnnotationAssertion(rdfs:label obo:RO_0001900 "temporal interpretation"@en) # Annotation Property: obo:STATO_0000032 (STATO alternative term) -AnnotationAssertion(obo:IAO_0000115 obo:STATO_0000032 "an alternative term used for STATO statistical ontology and ISA team"@en) +AnnotationAssertion(obo:IAO_0000115 obo:STATO_0000032 "An alternative term used for STATO statistical ontology and ISA team"@en) AnnotationAssertion(obo:IAO_0000117 obo:STATO_0000032 "Alejandra Gonzalez-Beltran"@en) AnnotationAssertion(obo:IAO_0000117 obo:STATO_0000032 "Orlaith Burke") AnnotationAssertion(obo:IAO_0000117 obo:STATO_0000032 "Philippe Rocca-Serra"@en) @@ -2425,7 +2425,7 @@ SubClassOf(obo:APOLLO_SV_00000003 obo:APOLLO_SV_00000152) # Class: obo:APOLLO_SV_00000005 (simulating of process of type X) -AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000005 "a planned process that (1) has at least one process part that has as participants representations of participants (in place of those participants) of processes of type X, and where all such process parts substitute for parts of processes of type X, and (2) is carried out for the purpose of planning for processes of type X, learning more about processes of type X, or teaching about processes of type X."@en) +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000005 "A planned process that (1) has at least one process part that has as participants representations of participants (in place of those participants) of processes of type X, and where all such process parts substitute for parts of processes of type X, and (2) is carried out for the purpose of planning for processes of type X, learning more about processes of type X, or teaching about processes of type X."@en) AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000005 "A process that replaces the essential participants of another type of process with representations of those participants."@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:APOLLO_SV_00000005 "simulating of process of type X") AnnotationAssertion(rdfs:comment obo:APOLLO_SV_00000005 "For example, in a simulated volcano eruption, representations of lava, lava tubes, vents, etc. take the place of actual lava, lava tubes, vents, etc. @@ -2668,7 +2668,7 @@ AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000033 "counting"@en) # Class: obo:APOLLO_SV_00000034 (simulation of organism) -AnnotationAssertion(rdfs:comment obo:APOLLO_SV_00000034 "a simulation that is about an organism") +AnnotationAssertion(rdfs:comment obo:APOLLO_SV_00000034 "A simulation that is about an organism") AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000034 "simulation of organism"@en) EquivalentClasses(obo:APOLLO_SV_00000034 ObjectIntersectionOf(ObjectIntersectionOf(obo:APOLLO_SV_00000070 ObjectSomeValuesFrom(obo:APOLLO_SV_00000067 obo:OBI_0100026)) ObjectSomeValuesFrom(obo:RO_0000056 obo:APOLLO_SV_00000005))) @@ -2832,7 +2832,7 @@ SubClassOf(obo:APOLLO_SV_00000054 obo:IAO_0020000) AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000055 "A simulating of a disease epidemic or pandemic."@en) AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000055 "Mathias Brochhausen") -AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000055 "the process of simulating a disease epidemic or pandemic. This term is not currently used in Apollo-WS."@en) +AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000055 "A process of simulating a disease epidemic or pandemic. This term is not currently used in Apollo-WS."@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:APOLLO_SV_00000055 "epidemic simulation") AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000055 "epidemic simulating"@en) SubClassOf(obo:APOLLO_SV_00000055 obo:APOLLO_SV_00000005) @@ -2993,14 +2993,14 @@ SubClassOf(obo:APOLLO_SV_00000074 obo:APOLLO_SV_00000034) # Class: obo:APOLLO_SV_00000075 (infectious disease control objective specification) AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000075 "An objective specification that is realized by processes that are able or likely to stop the spread of a disease in a population."@en) -AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000075 "an objective of achieving satisfactory control of epidemic spread through a population"@en) +AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000075 "An objective of achieving satisfactory control of epidemic spread through a population"@en) AnnotationAssertion(rdfs:comment obo:APOLLO_SV_00000075 "typically, the process endpoint is achievement of R0 < 1"@en) AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000075 "infectious disease control objective specification"@en) SubClassOf(obo:APOLLO_SV_00000075 obo:IAO_0000005) # Class: obo:APOLLO_SV_00000076 (obsolete μ) -AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000076 "the mean or expectation of a distribution"@en) +AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000076 "A mean or expectation of a distribution"@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:APOLLO_SV_00000076 "μ") AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000076 "obsolete μ"@en) AnnotationAssertion(owl:deprecated obo:APOLLO_SV_00000076 "true"^^xsd:boolean) @@ -3023,7 +3023,7 @@ SubClassOf(obo:APOLLO_SV_00000078 obo:APOLLO_SV_00000251) # Class: obo:APOLLO_SV_00000079 (obsolete log normal distribution) -AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000079 "a continuous probability distribution over variable X whose parameters denoted μ and σ are, respectively, the mean and standard deviation of the variable’s natural logarithm"@en) +AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000079 "A continuous probability distribution over variable X whose parameters denoted μ and σ are, respectively, the mean and standard deviation of the variable’s natural logarithm"@en) AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000079 "obsolete log normal distribution"@en) AnnotationAssertion(owl:deprecated obo:APOLLO_SV_00000079 "true"^^xsd:boolean) SubClassOf(obo:APOLLO_SV_00000079 oboInOwl:ObsoleteClass) @@ -3037,21 +3037,21 @@ SubClassOf(obo:APOLLO_SV_00000080 obo:APOLLO_SV_00000251) # Class: obo:APOLLO_SV_00000081 (triangular distribution) -AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000081 "a continuous probability distribution with lower limit a, upper limit b and mode c, where a < b and a <= c <= b."@en) +AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000081 "A continuous probability distribution with lower limit a, upper limit b and mode c, where a < b and a <= c <= b."@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:APOLLO_SV_00000081 "triangular distribution") AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000081 "triangular distribution"@en) SubClassOf(obo:APOLLO_SV_00000081 obo:APOLLO_SV_00000251) # Class: obo:APOLLO_SV_00000082 (Bayesian network) -AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000082 "a discrete probability distribution"@en) +AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000082 "A discrete probability distribution"@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:APOLLO_SV_00000082 "BayesianNetwork") AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000082 "Bayesian network"@en) SubClassOf(obo:APOLLO_SV_00000082 obo:APOLLO_SV_00000246) # Class: obo:APOLLO_SV_00000083 (temporal Bayesian network) -AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000083 "a discrete probability distribution that conditions on time"@en) +AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000083 "A discrete probability distribution that conditions on time"@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:APOLLO_SV_00000083 "temporal Bayesian network") AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000083 "temporal Bayesian network"@en) SubClassOf(obo:APOLLO_SV_00000083 obo:APOLLO_SV_00001008) @@ -3111,8 +3111,8 @@ SubClassOf(obo:APOLLO_SV_00000089 ObjectIntersectionOf(obo:IAO_0000109 ObjectSom # Class: obo:APOLLO_SV_00000090 (vaccination efficacy study design execution) -AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000090 "a study design execution that has as its specified output one or more measured vaccination efficacy data items"@en) -AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000090 "an experiment that measures vaccination efficacy from a sample of vaccinated and possibly unvaccinated individuals"@en) +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000090 "A study design execution that has as its specified output one or more measured vaccination efficacy data items"@en) +AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000090 "An experiment that measures vaccination efficacy from a sample of vaccinated and possibly unvaccinated individuals"@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:APOLLO_SV_00000090 "VaccinationEfficacyStudy") AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000090 "vaccination efficacy study design execution"@en) EquivalentClasses(obo:APOLLO_SV_00000090 ObjectIntersectionOf(obo:OBI_0000471 ObjectSomeValuesFrom(obo:BFO_0000051 obo:APOLLO_SV_00000142) ObjectSomeValuesFrom(obo:OBI_0000299 obo:APOLLO_SV_00000089))) @@ -3120,7 +3120,7 @@ SubClassOf(obo:APOLLO_SV_00000090 obo:OBI_0000471) # Class: obo:APOLLO_SV_00000091 (obsolete immune) -AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000091 "an organism that has the property of being immune to a specific disease agent"@en) +AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000091 "An organism that has the property of being immune to a specific disease agent"@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:APOLLO_SV_00000091 "immune") AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000091 "obsolete immune") AnnotationAssertion(owl:deprecated obo:APOLLO_SV_00000091 "true"^^xsd:boolean) @@ -3128,14 +3128,14 @@ SubClassOf(obo:APOLLO_SV_00000091 oboInOwl:ObsoleteClass) # Class: obo:APOLLO_SV_00000092 (95% confidence interval) -AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000092 "a type of interval estimate of a population parameter used to indicate the reliability of an estimate. How frequently the observed interval contains the parameter is determined by the confidence level or confidence coefficient, in this type the confidence level is 95%"@en) +AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000092 "A type of interval estimate of a population parameter used to indicate the reliability of an estimate. How frequently the observed interval contains the parameter is determined by the confidence level or confidence coefficient, in this type the confidence level is 95%"@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:APOLLO_SV_00000092 "95% confidence interval") AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000092 "95% confidence interval") SubClassOf(obo:APOLLO_SV_00000092 obo:APOLLO_SV_00001008) # Class: obo:APOLLO_SV_00000093 (Bayesian credible interval) -AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000093 "a type of interval estimate of a population parameter that has the property that the true value of the estimated populatin parameter has a (specified) particular probability of being in the confidence interval given the data on which the estimate is derived."@en) +AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000093 "A type of interval estimate of a population parameter that has the property that the true value of the estimated populatin parameter has a (specified) particular probability of being in the confidence interval given the data on which the estimate is derived."@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:APOLLO_SV_00000093 "Baysesian credible interval") AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000093 "Bayesian credible interval") SubClassOf(obo:APOLLO_SV_00000093 obo:APOLLO_SV_00001008) @@ -3152,7 +3152,7 @@ SubClassOf(obo:APOLLO_SV_00000094 ObjectIntersectionOf(obo:BFO_0000027 ObjectSom # Class: obo:APOLLO_SV_00000095 (obsolete discrete probability distribution) -AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000095 "a probability distribution over a discrete random variable"@en) +AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000095 "A probability distribution over a discrete random variable"@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:APOLLO_SV_00000095 "discrete probability distribution") AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000095 "obsolete discrete probability distribution") AnnotationAssertion(owl:deprecated obo:APOLLO_SV_00000095 "true"^^xsd:boolean) @@ -3244,8 +3244,8 @@ SubClassOf(obo:APOLLO_SV_00000106 obo:IAO_0020000) # Class: obo:APOLLO_SV_00000107 (atmosphere) -AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000107 "a fiat object part that is in gaseous phase and that is the outer layer of an object in space and is held to the object by gravitational force"@en) -AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000107 "a fiat object part that is in gaseous phase and that is the outer layer of an object in space and is held to the object by gravitational force"@en) +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000107 "A fiat object part that is in gaseous phase and that is the outer layer of an object in space and is held to the object by gravitational force"@en) +AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000107 "A fiat object part that is in gaseous phase and that is the outer layer of an object in space and is held to the object by gravitational force"@en) AnnotationAssertion(dc:creator obo:APOLLO_SV_00000107 "William R. Hogan"@en) AnnotationAssertion(rdfs:comment obo:APOLLO_SV_00000107 "atmosphere of Earth, Earth's moon, Saturn, Titan, etc."@en) AnnotationAssertion(rdfs:comment obo:APOLLO_SV_00000107 "outer, gaseous layers of exoplanets are called extraterrestrial atmosphere."@en) @@ -3342,7 +3342,7 @@ SubClassOf(obo:APOLLO_SV_00000118 obo:BFO_0000015) # Class: obo:APOLLO_SV_00000119 (vaccination identifier) -AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000119 "a unique identifier that refers to a protocol for vaccinating one person") +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000119 "A unique identifier that refers to a protocol for vaccinating one person") AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000119 "A unique identifier for a vaccination protocol (the process of vaccinating one person)"@en) AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000119 "vaccination identifier"@en) SubClassOf(obo:APOLLO_SV_00000119 obo:IAO_0020000) @@ -3350,20 +3350,20 @@ SubClassOf(obo:APOLLO_SV_00000119 ObjectSomeValuesFrom(obo:IAO_0000219 obo:IAO_0 # Class: obo:APOLLO_SV_00000120 (vaccination course) -AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000120 "the number of doses of vaccine that are recommended to achieve immunity"@en) +AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000120 "A number of doses of vaccine that are recommended to achieve immunity"@en) AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000120 "vaccination course"@en) SubClassOf(obo:APOLLO_SV_00000120 obo:APOLLO_SV_00000795) # Class: obo:APOLLO_SV_00000121 (species) -AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000121 "an interbreeding population"@en) +AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000121 "An interbreeding population"@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:APOLLO_SV_00000121 "species") AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000121 "species"@en) SubClassOf(obo:APOLLO_SV_00000121 obo:APOLLO_SV_00001008) # Class: obo:APOLLO_SV_00000122 (antiviral identifier) -AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000122 "a unique identifier that refers to an antiviral drug product") +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000122 "A unique identifier that refers to an antiviral drug product") AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000122 "A unique identifier for an antiviral drug"@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:APOLLO_SV_00000122 "antiviralId") AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000122 "antiviral identifier"@en) @@ -3408,14 +3408,14 @@ SubClassOf(obo:APOLLO_SV_00000127 obo:APOLLO_SV_00001008) # Class: obo:APOLLO_SV_00000128 (control strategy target population fraction) AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000128 "Fraction of organisms in a target population that a control strategy program seeks to enroll or prioritize"@en) -AnnotationAssertion(rdfs:comment obo:APOLLO_SV_00000128 "a specification of a population that a control strategy applies to. It is intended to apply to a real population, so I don’t know whether you would consider it a simulated thing. I don’t.") +AnnotationAssertion(rdfs:comment obo:APOLLO_SV_00000128 "A specification of a population that a control strategy applies to. It is intended to apply to a real population, so I don’t know whether you would consider it a simulated thing. I don’t.") AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000128 "control strategy target population fraction"@en) SubClassOf(obo:APOLLO_SV_00000128 obo:APOLLO_SV_00000075) # Class: obo:APOLLO_SV_00000129 (obsolete Reactive control measure) -AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000129 "an epidemic control measure plan specification that has a conditional specification as part"@en) -AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000129 "a control measure (program) that is initiated or modified by an epidemic-related event (or if you prefer, an event occurring within/during the simulation)"@en) +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000129 "An epidemic control measure plan specification that has a conditional specification as part"@en) +AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000129 "A control measure (program) that is initiated or modified by an epidemic-related event (or if you prefer, an event occurring within/during the simulation)"@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:APOLLO_SV_00000129 "Reactive control measure") AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000129 "obsolete Reactive control measure"@en) AnnotationAssertion(owl:deprecated obo:APOLLO_SV_00000129 "true"^^xsd:boolean) @@ -3496,8 +3496,8 @@ SubClassOf(obo:APOLLO_SV_00000138 obo:APOLLO_SV_00000795) AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000139 "A measurement datum about the fraction of individuals in a population that elect to participate in a control strategy when offered."@en) AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000139 "A fraction of eligible individuals in a population who receive an intervention or participate in a control strategy."@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:APOLLO_SV_00000139 "compliance") -AnnotationAssertion(rdfs:comment obo:APOLLO_SV_00000139 "the class restriction can be made more precise AH"@en) -AnnotationAssertion(rdfs:comment obo:APOLLO_SV_00000139 "the fraction of some population that is targeted for a control strategy that accepts it. It can obviously also be interpreted as a probability that the average individual in the targeted population accepts/complies with the control strategy. It is not simulated"@en) +AnnotationAssertion(rdfs:comment obo:APOLLO_SV_00000139 "A class restriction can be made more precise AH"@en) +AnnotationAssertion(rdfs:comment obo:APOLLO_SV_00000139 "A fraction of some population that is targeted for a control strategy that accepts it. It can obviously also be interpreted as a probability that the average individual in the targeted population accepts/complies with the control strategy. It is not simulated"@en) AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000139 "control strategy compliance"@en) SubClassOf(obo:APOLLO_SV_00000139 ObjectIntersectionOf(obo:IAO_0000109 ObjectSomeValuesFrom(obo:IAO_0000136 ObjectIntersectionOf(obo:PCO_0000001 ObjectSomeValuesFrom(obo:RO_0000056 obo:APOLLO_SV_00000029))))) @@ -3582,7 +3582,7 @@ SubClassOf(obo:APOLLO_SV_00000149 ObjectSomeValuesFrom(obo:IAO_0000136 obo:APOLL # Class: obo:APOLLO_SV_00000150 (vaccination reactive end point fraction) -AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000150 "a fraction of the target population, that once vaccinated, results in stopping further vaccination in the population"@en) +AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000150 "A fraction of the target population, that once vaccinated, results in stopping further vaccination in the population"@en) AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000150 "vaccination reactive end point fraction"@en) SubClassOf(obo:APOLLO_SV_00000150 obo:APOLLO_SV_00000103) @@ -3900,7 +3900,7 @@ AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000186 "The process of exist AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000186 "William R. Hogan"@en) AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000186 "The process of existence without reproduction of a pathogen of a particular biological taxon in or on some material entity or the process of reproduction of a pathogen in or on a material entity that is not an organism."@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:APOLLO_SV_00000186 "Contamination") -AnnotationAssertion(rdfs:comment obo:APOLLO_SV_00000186 "the preferred term is biological contamination to distinguish from things like radiological contamination, contamination of the Gulf of Mexico with oil, the contamination of air with pollution, etc."@en) +AnnotationAssertion(rdfs:comment obo:APOLLO_SV_00000186 "The preferred term is biological contamination to distinguish from things like radiological contamination, contamination of the Gulf of Mexico with oil, the contamination of air with pollution, etc."@en) AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000186 "contamination"@en) EquivalentClasses(obo:APOLLO_SV_00000186 ObjectUnionOf(ObjectIntersectionOf(obo:APOLLO_SV_00000651 ObjectSomeValuesFrom(obo:RO_0000057 obo:APOLLO_SV_00000237) ObjectSomeValuesFrom(obo:RO_0000057 ObjectIntersectionOf(obo:BFO_0000040 ObjectComplementOf(obo:OBI_0100026)))) ObjectIntersectionOf(obo:GO_0008150 ObjectSomeValuesFrom(obo:RO_0000057 obo:APOLLO_SV_00000237) ObjectSomeValuesFrom(obo:RO_0000057 obo:BFO_0000040)))) SubClassOf(obo:APOLLO_SV_00000186 obo:GO_0008150) @@ -4068,7 +4068,7 @@ SubClassOf(obo:APOLLO_SV_00000206 obo:OBI_0100026) # Class: obo:APOLLO_SV_00000207 (resistant organism) -AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000207 "an organism that is the bearer of resistance to infection"@en) +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000207 "An organism that is the bearer of resistance to infection"@en) AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000207 "William R. Hogan"@en) AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000207 "An organism of a particular species that is unable to undergo infection with a particular pathogen."@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:APOLLO_SV_00000207 "resistant") @@ -4151,8 +4151,8 @@ SubClassOf(obo:APOLLO_SV_00000215 obo:IAO_0000030) # Class: obo:APOLLO_SV_00000216 (discrete probability distribution) -AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000216 "a probability distribution over a discrete random variable"@en) -AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000216 "a probability distribution over a discrete random variable"@en) +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000216 "A probability distribution over a discrete random variable"@en) +AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000216 "A probability distribution over a discrete random variable"@en) AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000216 "discrete probability distribution"@en) SubClassOf(obo:APOLLO_SV_00000216 obo:APOLLO_SV_00000215) @@ -4275,7 +4275,7 @@ SubClassOf(obo:APOLLO_SV_00000228 obo:APOLLO_SV_00000486) # Class: obo:APOLLO_SV_00000229 (place closure control strategy) -AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000229 "an infectious disease control strategy that has an action specification that is realized in closing facilities where organisms congregate during times when the facilities normally would be open."@en) +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000229 "An infectious disease control strategy that has an action specification that is realized in closing facilities where organisms congregate during times when the facilities normally would be open."@en) AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000229 "William R. Hogan") AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000229 "An infectious disease control strategy that attempts to prevent infection of susceptible host organisms in a population by preventing potentially infectious contacts (for a particular pathogen) among the organisms in the population."@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:APOLLO_SV_00000229 "PlaceClosureControlMeasure") @@ -4284,7 +4284,7 @@ SubClassOf(obo:APOLLO_SV_00000229 obo:APOLLO_SV_00000086) # Class: obo:APOLLO_SV_00000230 (case isolation control strategy) -AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000230 "an infectious disease control strategy that has an action specification that is realized in isolating organsims who are infectious."@en) +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000230 "An infectious disease control strategy that has an action specification that is realized in isolating organsims who are infectious."@en) AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000230 "William R. Hogan"@en) AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000230 "An infectious disease control strategy that isolates infected and/or infectious individuals in a population from most or all potentially infectious contacts with susceptible individuals."@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:APOLLO_SV_00000230 "CaseQuarantineControlMeasure") @@ -4406,7 +4406,7 @@ SubClassOf(obo:APOLLO_SV_00000243 ObjectSomeValuesFrom(obo:IAO_0000136 ObjectInt # Class: obo:APOLLO_SV_00000244 (disease unique identifier) -AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000244 "a unique identifier that refers to a disease."@en) +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000244 "A unique identifier that refers to a disease."@en) AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000244 "Mathias Brochhausen"@en) AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000244 "A unique identifier that refers to a particular type of disease."@en) AnnotationAssertion(rdfs:comment obo:APOLLO_SV_00000244 "This class is different from its superclass, in that the identifier is non-redundant with other identifiers in its context (such as a coding system or terminology or ontology). The superclass admits of natural langugage names of diseases, whereas this one typically does not."@en) @@ -4489,17 +4489,17 @@ SubClassOf(obo:APOLLO_SV_00000253 obo:STATO_0000321) AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000254 "A continuous parametric probability distribution that takes as its input a normally-distributed logarithmic function with mean μ and standard deviation σ."@en) AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000254 "Mathias Brochhausen"@en) AnnotationAssertion(obo:IAO_0000119 obo:APOLLO_SV_00000254 "http://en.wikipedia.org/w/index.php?title=Log-normal_distribution&oldid=601643223"@en) -AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000254 "a log-normal (or lognormal) distribution is a continuous probability distribution of a random variable whose logarithm is normally distributed."@en) +AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000254 "A log-normal (or lognormal) distribution is a continuous probability distribution of a random variable whose logarithm is normally distributed."@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:APOLLO_SV_00000254 "LogNormalDistribution") AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000254 "log normal distribution"@en) SubClassOf(obo:APOLLO_SV_00000254 obo:APOLLO_SV_00000251) # Class: obo:APOLLO_SV_00000255 (gamma distribution) -AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000255 "the gamma distribution is a two-parameter family of continuous probability distributions"@en) +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000255 "A gamma distribution is a two-parameter family of continuous probability distributions"@en) AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000255 "Mathias Brochhausen"@en) AnnotationAssertion(obo:IAO_0000119 obo:APOLLO_SV_00000255 "http://en.wikipedia.org/w/index.php?title=Gamma_distribution&oldid=602019254"@en) -AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000255 "the gamma distribution is a two-parameter family of continuous probability distributions"@en) +AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000255 "A gamma distribution is a two-parameter family of continuous probability distributions"@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:APOLLO_SV_00000255 "GammaDistribution") AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000255 "gamma distribution"@en) SubClassOf(obo:APOLLO_SV_00000255 obo:APOLLO_SV_00000251) @@ -4515,10 +4515,10 @@ SubClassOf(obo:APOLLO_SV_00000256 obo:APOLLO_SV_00000251) # Class: obo:APOLLO_SV_00000257 (continuous uniform distribution) -AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000257 "the continuous uniform distribution or rectangular distribution is a family of symmetric probability distributions such that for each member of the family, all intervals of the same length on the distribution's support are equally probable."@en) +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000257 "A continuous uniform distribution or rectangular distribution is a family of symmetric probability distributions such that for each member of the family, all intervals of the same length on the distribution's support are equally probable."@en) AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000257 "Mathias Brochhausen"@en) AnnotationAssertion(obo:IAO_0000119 obo:APOLLO_SV_00000257 "http://en.wikipedia.org/w/index.php?title=Uniform_distribution_(continuous)&oldid=597643343"@en) -AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000257 "the continuous uniform distribution or rectangular distribution is a family of symmetric probability distributions such that for each member of the family, all intervals of the same length on the distribution's support are equally probable."@en) +AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000257 "A continuous uniform distribution or rectangular distribution is a family of symmetric probability distributions such that for each member of the family, all intervals of the same length on the distribution's support are equally probable."@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:APOLLO_SV_00000257 "ContinuousUniformDistribution") AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000257 "continuous uniform distribution"@en) SubClassOf(obo:APOLLO_SV_00000257 obo:APOLLO_SV_00000251) @@ -4660,7 +4660,7 @@ SubClassOf(obo:APOLLO_SV_00000271 obo:APOLLO_SV_00000261) # Class: obo:APOLLO_SV_00000272 (time since time scale zero) -AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000272 "the duration of time that has elapsed from the zero reference point to a later time on the time scale"@en) +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000272 "A duration of time that has elapsed from the zero reference point to a later time on the time scale"@en) AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000272 "William R. Hogan"@en) AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000272 "A duration of time that has elapsed since the zero reference point of a time scale."@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:APOLLO_SV_00000272 "timeSinceTimeScaleZero") @@ -5116,9 +5116,9 @@ SubClassOf(obo:APOLLO_SV_00000328 obo:APOLLO_SV_00000308) # Class: obo:APOLLO_SV_00000330 (colonization) AnnotationAssertion(obo:IAO_0000111 obo:APOLLO_SV_00000330 "biological colonization"@en) -AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000330 "a reproduction of a pathogen of a particular biological taxon inside a host organism of another taxon, without invasion of the tissues of the host."@en) +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000330 "A reproduction of a pathogen of a particular biological taxon inside a host organism of another taxon, without invasion of the tissues of the host."@en) AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000330 "William R. Hogan"@en) -AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000330 "a reproduction of a pathogen of a particular biological taxon inside a host organism of another taxon, without invasion of the tissues of the host."@en) +AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000330 "A reproduction of a pathogen of a particular biological taxon inside a host organism of another taxon, without invasion of the tissues of the host."@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:APOLLO_SV_00000330 "Colonization") AnnotationAssertion(rdfs:comment obo:APOLLO_SV_00000330 "Primary use case is colonization of humans, animals with Staph aureus, but it also covers bacteriuria, transient bactermia, and normal gut flora."@en) AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000330 "colonization"@en) @@ -5128,9 +5128,9 @@ SubClassOf(obo:APOLLO_SV_00000330 obo:APOLLO_SV_00000651) # Class: obo:APOLLO_SV_00000331 (infection in population) AnnotationAssertion(obo:IAO_0000111 obo:APOLLO_SV_00000331 "infection in a population"@en) -AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000331 "an infection in an ecosystem occurring in one population of organisms"@en) +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000331 "An infection in an ecosystem occurring in one population of organisms"@en) AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000331 "William R. Hogan"@en) -AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000331 "an infection in an ecosystem occurring in one population of organisms"@en) +AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000331 "An infection in an ecosystem occurring in one population of organisms"@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:APOLLO_SV_00000331 "Infection"@en) AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000331 "infection in population"@en) SubClassOf(obo:APOLLO_SV_00000331 obo:APOLLO_SV_00000306) @@ -5138,20 +5138,20 @@ SubClassOf(obo:APOLLO_SV_00000331 obo:APOLLO_SV_00000306) # Class: obo:APOLLO_SV_00000332 (colonization acquisition) AnnotationAssertion(obo:IAO_0000111 obo:APOLLO_SV_00000332 "colonization acquisition"@en) -AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000332 "a biological process where a pathogen organism of a particular biological taxon enters into a host organism of a particular taxon and begins to undergo reproduction in a location external to tissues of the host"@en) +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000332 "A biological process where a pathogen organism of a particular biological taxon enters into a host organism of a particular taxon and begins to undergo reproduction in a location external to tissues of the host"@en) AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000332 "William R. Hogan"@en) -AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000332 "a biological process where a pathogen organism of a particular biological taxon enters into a host organism of a particular taxon and begins to undergo reproduction in a location external to tissues of the host"@en) +AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000332 "A biological process where a pathogen organism of a particular biological taxon enters into a host organism of a particular taxon and begins to undergo reproduction in a location external to tissues of the host"@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:APOLLO_SV_00000332 "ColonizationAcquisition") -AnnotationAssertion(rdfs:comment obo:APOLLO_SV_00000332 "the host organism was not colonized wtih the pathogen prior to the colonization acquisition"@en) +AnnotationAssertion(rdfs:comment obo:APOLLO_SV_00000332 "The host organism was not colonized wtih the pathogen prior to the colonization acquisition"@en) AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000332 "colonization acquisition"@en) SubClassOf(obo:APOLLO_SV_00000332 obo:GO_0044409) # Class: obo:APOLLO_SV_00000333 (decolonization control strategy) AnnotationAssertion(obo:IAO_0000111 obo:APOLLO_SV_00000333 "decolonization control strategy"@en) -AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000333 "an indivdiual treatment control strategy that prevents infectious disease by treating indivdiuals colonized with a pathogen of a particular species to limit or end the colonization"@en) +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000333 "An indivdiual treatment control strategy that prevents infectious disease by treating indivdiuals colonized with a pathogen of a particular species to limit or end the colonization"@en) AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000333 "William R. Hogan"@en) -AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000333 "an indivdiual treatment control strategy that prevents infectious disease by treating indivdiuals colonized with a pathogen of a particular species to limit or end the colonization"@en) +AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000333 "An indivdiual treatment control strategy that prevents infectious disease by treating indivdiuals colonized with a pathogen of a particular species to limit or end the colonization"@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:APOLLO_SV_00000333 "DecolonizationControlMeasure") AnnotationAssertion(rdfs:comment obo:APOLLO_SV_00000333 "typically the pathogen is a bacterium"@en) AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000333 "decolonization control strategy"@en) @@ -7628,9 +7628,9 @@ SubClassOf(obo:APOLLO_SV_00000588 obo:IAO_0000005) # Class: obo:APOLLO_SV_00000589 (treatment in the ICU control strategy) AnnotationAssertion(obo:IAO_0000111 obo:APOLLO_SV_00000589 "treatment in the intensive care unit control strategy"@en) -AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000589 "an individual treatment control strategy that is realized by one or more intensive care unit encounters for infected individuals in the population"@en) +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000589 "An individual treatment control strategy that is realized by one or more intensive care unit encounters for infected individuals in the population"@en) AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000589 "William R. Hogan"@en) -AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000589 "an individual treatment control strategy that is realized by treating one or more infected individuals in an intensive care unit"@en) +AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000589 "An individual treatment control strategy that is realized by treating one or more infected individuals in an intensive care unit"@en) AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000589 "treatment in the ICU control strategy"@en) SubClassOf(obo:APOLLO_SV_00000589 obo:APOLLO_SV_00000194) @@ -7719,7 +7719,7 @@ SubClassOf(obo:APOLLO_SV_00000597 obo:IAO_0000594) # Class: obo:APOLLO_SV_00000598 (disease identifier) AnnotationAssertion(obo:IAO_0000111 obo:APOLLO_SV_00000598 "disease identifier"@en) -AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000598 "an identifier that denotes a disease."@en) +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000598 "An identifier that denotes a disease."@en) AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000598 "William R. Hogan"@en) AnnotationAssertion(dc:contributor obo:APOLLO_SV_00000598 "Mathias Brochhausen"@en) AnnotationAssertion(dc:creator obo:APOLLO_SV_00000598 ) @@ -7732,7 +7732,7 @@ SubClassOf(obo:APOLLO_SV_00000598 obo:IAO_0020000) AnnotationAssertion(obo:IAO_0000111 obo:APOLLO_SV_00000599 "dataset about infectious disease acquisitions"@en) AnnotationAssertion(obo:IAO_0000112 obo:APOLLO_SV_00000599 "The dataset at this link is rdf:type this class: https://figshare.com/articles/dataset/COVID19_settings_of_transmission_-_collected_reports_database/12173343"@en) -AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000599 "a dataset that is about infectious disease acquisitions at particular times and particular places."@en) +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000599 "A dataset that is about infectious disease acquisitions at particular times and particular places."@en) AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000599 "William R. Hogan"@en) AnnotationAssertion(dc:creator obo:APOLLO_SV_00000599 ) AnnotationAssertion(dc:date obo:APOLLO_SV_00000599 "2021-03-16T16:16:26Z"^^xsd:dateTime) @@ -7745,7 +7745,7 @@ SubClassOf(obo:APOLLO_SV_00000599 obo:IAO_0000100) AnnotationAssertion(obo:IAO_0000111 obo:APOLLO_SV_00000600 "dataset about hospital stays"@en) AnnotationAssertion(obo:IAO_0000112 obo:APOLLO_SV_00000600 "The datasets at this link are rdf:type this class: https://www.opendataphilly.org/dataset/covid-hospitalizations"@en) -AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000600 "a dataset that is about two or more hospital stays involving two or more patients."@en) +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000600 "A dataset that is about two or more hospital stays involving two or more patients."@en) AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000600 "William R. Hogan"@en) AnnotationAssertion(obo:IAO_0000118 obo:APOLLO_SV_00000600 "hospital discharge dataset"@en) AnnotationAssertion(obo:IAO_0000118 obo:APOLLO_SV_00000600 "hospitalization dataset"@en) @@ -7758,7 +7758,7 @@ SubClassOf(obo:APOLLO_SV_00000600 obo:IAO_0000100) # Class: obo:APOLLO_SV_00000601 (human daily movement) AnnotationAssertion(obo:IAO_0000111 obo:APOLLO_SV_00000601 "human daily movement behavior"@en) -AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000601 "an individual human behavior that is the movements from one location to another throughout the day (e.g., work, home, stores, church, relatives' homes) in the areas adjacent to where the human lives at the time."@en) +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000601 "An individual human behavior that is the movements from one location to another throughout the day (e.g., work, home, stores, church, relatives' homes) in the areas adjacent to where the human lives at the time."@en) AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000601 "William R. Hogan"@en) AnnotationAssertion(dc:creator obo:APOLLO_SV_00000601 ) AnnotationAssertion(dc:date obo:APOLLO_SV_00000601 "2021-03-16T16:29:53Z"^^xsd:dateTime) @@ -7769,7 +7769,7 @@ SubClassOf(obo:APOLLO_SV_00000601 obo:APOLLO_SV_00000402) AnnotationAssertion(obo:IAO_0000111 obo:APOLLO_SV_00000602 "human daily movement behavior data set"@en) AnnotationAssertion(obo:IAO_0000112 obo:APOLLO_SV_00000602 "https://www.google.com/covid19/mobility/"@en) -AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000602 "a data set that is about the human daily movement behavior of the individual huamns in a given population."@en) +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000602 "A data set that is about the human daily movement behavior of the individual huamns in a given population."@en) AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000602 "William R. Hogan"@en) AnnotationAssertion(dc:creator obo:APOLLO_SV_00000602 ) AnnotationAssertion(dc:date obo:APOLLO_SV_00000602 "2021-03-16T16:32:39Z"^^xsd:dateTime) @@ -7780,7 +7780,7 @@ SubClassOf(obo:APOLLO_SV_00000602 obo:IAO_0000100) # Class: obo:APOLLO_SV_00000603 (potentially infectious contact data set) AnnotationAssertion(obo:IAO_0000111 obo:APOLLO_SV_00000603 "potentially infectious contact process data set in a population"@en) -AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000603 "a data set that is about one or more potentially infectious contact processes in a population of host organisms."@en) +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000603 "A data set that is about one or more potentially infectious contact processes in a population of host organisms."@en) AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000603 "William R. Hogan"@en) AnnotationAssertion(obo:IAO_0000118 obo:APOLLO_SV_00000603 "contact data set"@en) AnnotationAssertion(dc:creator obo:APOLLO_SV_00000603 ) @@ -7792,7 +7792,7 @@ SubClassOf(obo:APOLLO_SV_00000603 obo:IAO_0000100) # Class: obo:APOLLO_SV_00000604 (control strategy census) AnnotationAssertion(obo:IAO_0000111 obo:APOLLO_SV_00000604 "infectious disease control strategy census"@en) -AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000604 "a census of infectious disease control strategies put into place to reduce infection acquisitions that are part of an infection in an ecosystem."@en) +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000604 "A census of infectious disease control strategies put into place to reduce infection acquisitions that are part of an infection in an ecosystem."@en) AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000604 "William R. Hogan"@en) AnnotationAssertion(dc:creator obo:APOLLO_SV_00000604 ) AnnotationAssertion(dc:date obo:APOLLO_SV_00000604 "2021-03-16T16:43:04Z"^^xsd:dateTime) @@ -7803,7 +7803,7 @@ SubClassOf(obo:APOLLO_SV_00000604 obo:IAO_0000100) # Class: obo:APOLLO_SV_00000605 (school closure control strategy census) AnnotationAssertion(obo:IAO_0000111 obo:APOLLO_SV_00000605 "school closure infectious disease control strategy census"@en) -AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000605 "an infectious disease control strategy census that is about school closure infectious disease control strategies implemented in a particular geographical region."@en) +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000605 "An infectious disease control strategy census that is about school closure infectious disease control strategies implemented in a particular geographical region."@en) AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000605 "William R. Hogan"@en) AnnotationAssertion(dc:creator obo:APOLLO_SV_00000605 ) AnnotationAssertion(dc:date obo:APOLLO_SV_00000605 "2021-03-16T16:44:03Z"^^xsd:dateTime) @@ -7827,7 +7827,7 @@ SubClassOf(obo:APOLLO_SV_00000606 obo:APOLLO_SV_00000604) AnnotationAssertion(obo:IAO_0000111 obo:APOLLO_SV_00000607 "population vaccination census"@en) AnnotationAssertion(obo:IAO_0000112 obo:APOLLO_SV_00000607 "vaccine / immunization registry data, vaccination / immunization records extracted from an EHR"@en) -AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000607 "a population treatment census that is about one or more vaccinations of organisms in a population."@en) +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000607 "A population treatment census that is about one or more vaccinations of organisms in a population."@en) AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000607 "William R. Hogan"@en) AnnotationAssertion(obo:IAO_0000118 obo:APOLLO_SV_00000607 "vaccination census"@en) AnnotationAssertion(dc:creator obo:APOLLO_SV_00000607 ) @@ -13359,7 +13359,7 @@ SubClassOf(obo:OBI_0000115 obo:OBI_0500000) AnnotationAssertion(obo:IAO_0000111 obo:OBI_0000227 "data encoding"@en) AnnotationAssertion(obo:IAO_0000112 obo:OBI_0000227 "storage of measurement results from an assay into a text file, such as"@en) AnnotationAssertion(obo:IAO_0000114 obo:OBI_0000227 obo:IAO_0000120) -AnnotationAssertion(obo:IAO_0000115 obo:OBI_0000227 "a documenting process to encode an information entity into a digital document"@en) +AnnotationAssertion(obo:IAO_0000115 obo:OBI_0000227 "A documenting process to encode an information entity into a digital document"@en) AnnotationAssertion(obo:IAO_0000117 obo:OBI_0000227 "PlanAndPlannedProcess Branch"@en) AnnotationAssertion(obo:IAO_0000119 obo:OBI_0000227 "OBI branch derived"@en) AnnotationAssertion(obo:IAO_0000232 obo:OBI_0000227 "We (protocol application branch) placed this term because it kept getting bounced from data transformation and DENRIE"@en) @@ -13427,9 +13427,9 @@ AnnotationAssertion(obo:IAO_0000412 obo:OBI_0000471 obo:obi.owl) # Class: obo:OBI_0000576 (scattered molecular aggregate) AnnotationAssertion(obo:IAO_0000111 obo:OBI_0000576 "scattered molecular aggregate"@en) -AnnotationAssertion(obo:IAO_0000112 obo:OBI_0000576 "the sodium and chloride ions in a glass of salt water") +AnnotationAssertion(obo:IAO_0000112 obo:OBI_0000576 "The sodium and chloride ions in a glass of salt water") AnnotationAssertion(obo:IAO_0000114 obo:OBI_0000576 obo:IAO_0000123) -AnnotationAssertion(obo:IAO_0000115 obo:OBI_0000576 "a material entity that consists of all the molecules of a specific type that are located in some bounded region and which is part of a more massive material entity that has parts that are other such aggregates"@en) +AnnotationAssertion(obo:IAO_0000115 obo:OBI_0000576 "A material entity that consists of all the molecules of a specific type that are located in some bounded region and which is part of a more massive material entity that has parts that are other such aggregates"@en) AnnotationAssertion(obo:IAO_0000117 obo:OBI_0000576 "PERSON: Alan Ruttenberg"@en) AnnotationAssertion(obo:IAO_0000118 obo:OBI_0000576 "Collective"@en) AnnotationAssertion(obo:IAO_0000119 obo:OBI_0000576 "Discussion in Karslruhe with, among others, Alan Rector, Stefan Schulz, Marijke Keet, Melanie Courtot, and Alan Ruttenberg. With inspiration from the paper Granularity, scale and collectivity: When size does and does not matter, Alan Recto, Jeremy Rogers, Thomas Bittner, Journal of Biomedical Informatics 39 (2006) 333-349"@en) @@ -13774,7 +13774,7 @@ SubClassOf(obo:OBI_0400107 obo:OBI_0000968) # Class: obo:OBI_0500000 (study design) AnnotationAssertion(obo:IAO_0000111 obo:OBI_0500000 "study design"@en) -AnnotationAssertion(obo:IAO_0000112 obo:OBI_0500000 "a matched pairs study design describes criteria by which subjects are identified as pairs which then undergo the same protocols, and the data generated is analyzed by comparing the differences between the paired subjects, which constitute the results of the executed study design."@en) +AnnotationAssertion(obo:IAO_0000112 obo:OBI_0500000 "A matched pairs study design describes criteria by which subjects are identified as pairs which then undergo the same protocols, and the data generated is analyzed by comparing the differences between the paired subjects, which constitute the results of the executed study design."@en) AnnotationAssertion(obo:IAO_0000114 obo:OBI_0500000 obo:IAO_0000122) AnnotationAssertion(obo:IAO_0000115 obo:OBI_0500000 "A plan specification comprised of protocols (which may specify how and what kinds of data will be gathered) that are executed as part of an investigation and is realized during a study design execution.") AnnotationAssertion(obo:IAO_0000116 obo:OBI_0500000 "Editor note: there is at least an implicit restriction on the kind of data transformations that can be done based on the measured data available.") @@ -14094,7 +14094,7 @@ SubClassOf(obo:STATO_0000245 obo:STATO_0000085) AnnotationAssertion(obo:IAO_0000112 obo:STATO_0000252 ""@en) AnnotationAssertion(obo:IAO_0000114 obo:STATO_0000252 obo:IAO_0000122) -AnnotationAssertion(obo:IAO_0000115 obo:STATO_0000252 "a categorical variable is a variable which that can only assume a finite number of value and cast observation in a small number of categories"@en) +AnnotationAssertion(obo:IAO_0000115 obo:STATO_0000252 "A categorical variable is a variable which that can only assume a finite number of value and cast observation in a small number of categories"@en) AnnotationAssertion(obo:IAO_0000117 obo:STATO_0000252 "Alejandra Gonzalez-Beltran") AnnotationAssertion(obo:IAO_0000117 obo:STATO_0000252 "Orlaith Burke") AnnotationAssertion(obo:IAO_0000117 obo:STATO_0000252 "Philippe Rocca-Serra") @@ -14112,7 +14112,7 @@ SubClassOf(obo:STATO_0000252 obo:STATO_0000258) # Class: obo:STATO_0000258 (variable) AnnotationAssertion(obo:IAO_0000114 obo:STATO_0000258 obo:IAO_0000122) -AnnotationAssertion(obo:IAO_0000115 obo:STATO_0000258 "a variable is a data item which can assume any of a set of values, either as determined by an agent or as randomly occuring through observation."@en) +AnnotationAssertion(obo:IAO_0000115 obo:STATO_0000258 "A variable is a data item which can assume any of a set of values, either as determined by an agent or as randomly occuring through observation."@en) AnnotationAssertion(obo:IAO_0000117 obo:STATO_0000258 "Alejandra Gonzalez-Beltran"@en) AnnotationAssertion(obo:IAO_0000117 obo:STATO_0000258 "Orlaith Burke") AnnotationAssertion(obo:IAO_0000117 obo:STATO_0000258 "Philippe Rocca-Serra"@en) @@ -14238,7 +14238,7 @@ SubClassOf(obo:UO_0000280 obo:IAO_0000003) AnnotationAssertion(obo:IAO_0000115 obo:VO_0000001 "A vaccine is a processed material with the function that when administered, it prevents or ameliorates a disorder in a target organism by inducing or modifying adaptive immune responses specific to the antigens in the vaccine.") AnnotationAssertion(obo:IAO_0000116 obo:VO_0000001 "Many vaccines are developed to protect against infectious pathogens. Many vaccines are also being developed against some diseases such as cancer and autoimmune diseases. Vaccine is developed against a disease. Allergy.") AnnotationAssertion(obo:IAO_0000117 obo:VO_0000001 "YH, BP, BS, MC, LC, XZ, RS") -AnnotationAssertion(obo:IAO_0000117 obo:VO_0000001 "a role that inheres in a prepared material entity that is designed to induce protection or treament for a diease or infection in vivo.") +AnnotationAssertion(obo:IAO_0000117 obo:VO_0000001 "A role that inheres in a prepared material entity that is designed to induce protection or treament for a diease or infection in vivo.") AnnotationAssertion(obo:IAO_0000412 obo:VO_0000001 "http://purl.obolibrary.org/obo/vo.owl") AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:VO_0000001 "Vaccine") AnnotationAssertion(rdfs:label obo:VO_0000001 "vaccine") @@ -14287,9 +14287,9 @@ AnnotationAssertion(owl:deprecated (obsolete specificity of treatment detection) -AnnotationAssertion(obo:IAO_0000115 "the specificity of a system that classifies organisms into the binary categories of having received a particular treatment and not having received a particular treatment"@en) +AnnotationAssertion(obo:IAO_0000115 "The specificity of a system that classifies organisms into the binary categories of having received a particular treatment and not having received a particular treatment"@en) AnnotationAssertion(obo:IAO_0000117 "William R. Hogan"@en) -AnnotationAssertion(obo:IAO_0000600 "the specificity of the process or system that detects organisms that have undergone a particular treatment"@en) +AnnotationAssertion(obo:IAO_0000600 "The specificity of the process or system that detects organisms that have undergone a particular treatment"@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 "specificityOfTreatmentDetection") AnnotationAssertion(rdfs:comment "Deprecated due to malformed URI and created anew."@en) AnnotationAssertion(rdfs:label "obsolete specificity of treatment detection"@en) @@ -14297,9 +14297,9 @@ AnnotationAssertion(owl:deprecated (obsolete sensitivity of treatment detection) -AnnotationAssertion(obo:IAO_0000115 "the sensitivity of a system that classifies organisms into the binary categories of having received a particular treatment and not having received a particular treatment"@en) +AnnotationAssertion(obo:IAO_0000115 "The sensitivity of a system that classifies organisms into the binary categories of having received a particular treatment and not having received a particular treatment"@en) AnnotationAssertion(obo:IAO_0000117 "William R. Hogan"@en) -AnnotationAssertion(obo:IAO_0000600 "the sensitivity of the process or system that detects organisms that have undergone a particular treatment"@en) +AnnotationAssertion(obo:IAO_0000600 "The sensitivity of the process or system that detects organisms that have undergone a particular treatment"@en) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 "sensitivityOfTreatmentDetection") AnnotationAssertion(rdfs:comment "Deprecated due to malformed URI and created anew."@en) AnnotationAssertion(rdfs:label "obsolete sensitivity of treatment detection"@en) @@ -14348,4 +14348,4 @@ ClassAssertion(obo:UO_0000003 obo:UO_0000034) AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:GEO_000000005 "administrativeLocations") -) \ No newline at end of file +)