scSAGA/pyproject.toml at main · AluruLab/scSAGA · GitHub

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[build-system]
requires = ["setuptools>=68", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "scSAGA"
version = "0.1.0"
description = "Single-cell SAmpled Gromov-Wasserstein Alignment framework for multimodal RNA-seq and ATAC-seq integration"
readme = "README.md"
license = { file = "LICENSE" }
requires-python = ">=3.10"
authors = [
    { name = "Swethasree Bhattaram" }
]
keywords = ["single-cell", "ATAC-seq", "RNA-seq", "optimal transport", "multimodal"]
classifiers = [
    "Programming Language :: Python :: 3",
    "License :: OSI Approved :: Apache Software License",
    "Operating System :: OS Independent",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
]
dependencies = [
    "numpy",
    "pandas",
    "scipy",
    "scikit-learn",
    "pyyaml",
    "plotly",
    "pot",
    "torch",
    "pydantic",
    "joblib",
    "matplotlib",
    "anndata",
    "geosketch",
    "scanpy",
    "scib",
]

[project.optional-dependencies]
dev = [
    "basedpyright",
    "jupyter",
    "memory_profiler",
    "devtools",
]

[project.scripts]
scsaga = "scmint.cli:main"

[project.urls]
Homepage = "https://github.com/Swethasree-Bhattaram/scSAGA"
Repository = "https://github.com/Swethasree-Bhattaram/scSAGA"

[tool.setuptools.packages.find]
where = ["."]
include = ["scmint*"]

[tool.setuptools.package-data]
scmint = ["*.yml", "*.yaml", "*.json"]