Merge pull request #174 from AllenInstitute/pixi_pyproject

pyproject: setup pyproject with pixi

Author: RussTorres

.gitignore

@@ -15,4 +15,5 @@ htmlcov/
 .pytest_cache
 .vscode
 .idea/
-*.iml
+*.iml
+.pixi/

pyproject.toml

@@ -0,0 +1,94 @@
+[project]
+name = "render-python"
+description = "python API client to interact with render databases (see https://github.com/saalfeldlab/render)"
+readme = "README.rst"
+license = {file = "LICENSE"}
+authors = [
+  {name = "Forrest Collman"},
+  {name = "Russel Torres"},
+  {name = "Eric Perlman"},
+  {name = "Sharmi Seshamani"}
+]
+maintainers = [
+  {name = "Russel Torres"}
+]
+requires-python = ">3.8,<3.12"
+dynamic = ["version"]
+dependencies = [
+    "requests",
+    "scipy",
+    "numpy",
+    "pillow",
+    "sphinxcontrib-napoleon",
+    "decorator",
+    "six"
+]
+
+[project.urls]
+Repository = "https://github.com/AllenInstitute/render-python.git"
+
+[project.optional-dependencies]
+test = [
+    "coverage>=4.1",
+    "mock>=2.0.0",
+    "pep8>=1.7.0",
+    # "pytest>4.6,<5.0",
+    "pytest",
+    "pytest-cov>=2.2.1",
+    "pytest-pep8>=1.0.6",
+    "pytest-xdist>=1.14",
+    "flake8>=3.0.4",
+    "pylint>=1.5.4",
+    "jinja2",
+    "ujson"
+]
+pypi-build = [
+    "build",
+    "twine"
+]
+
+[build-system]
+requires = ["setuptools>=64", "setuptools_scm>=8"]
+build-backend = "setuptools.build_meta"
+
+[tool.setuptools]
+py-modules = [
+    "renderapi"
+]
+
+[tool.setuptools_scm]
+version_file = "renderapi/_version.py"
+
+# some downgrades from pixi's expectations
+[tool.pixi.system-requirements]
+linux = "5.0.0"
+libc = "2.27"
+
+[tool.pixi.project]
+channels = ["conda-forge"]
+platforms = ["linux-64"]
+
+[tool.pixi.pypi-dependencies]
+render-python = { path = ".", editable = true }
+
+# conda-enabled features
+[tool.pixi.feature.pixi-base.dependencies]
+numpy = "*"
+scipy = "*"
+
+[tool.pixi.environments]
+test = ["test"]
+conda = ["pixi-base"]
+conda-test = ["pixi-base", "test"]
+build = ["pypi-build"]
+
+[tool.coverage.run]
+omit = ["integration_tests/*", "test/*"]
+
+[tool.pixi.feature.test.tasks]
+test = "pytest  --cov --cov-report=xml --junitxml=test-reports/test.xml"
+
+[tool.pixi.feature.pypi-build.tasks]
+pypi-build = "python -m build"
+pypi-test-upload = "python -m twine upload --repository testpypi dist/*"
+pypi-test-deploy = "python -m build && python -m twine upload --repository testpypi dist/*"