diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml index 72668a4..4eb656f 100644 --- a/.github/workflows/publish.yml +++ b/.github/workflows/publish.yml @@ -75,7 +75,7 @@ jobs: - name: Set-up Python uses: actions/setup-python@v5 with: - python-version: '3.11' + python-version: '3.13' cache: 'poetry' # Configure project diff --git a/.github/workflows/pull_request.yml b/.github/workflows/pull_request.yml index 00b1bfd..f7e6b5c 100644 --- a/.github/workflows/pull_request.yml +++ b/.github/workflows/pull_request.yml @@ -75,7 +75,7 @@ jobs: - name: Set-up Python uses: actions/setup-python@v5 with: - python-version: '3.11' + python-version: '3.13' cache: 'poetry' # Configure project diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index dba1c7a..0a09620 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -8,7 +8,7 @@ repos: # Some minor quality of life things - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v4.6.0 + rev: v5.0.0 hooks: - id: check-merge-conflict - id: check-added-large-files @@ -18,28 +18,28 @@ repos: # Ensure that revisions for tools such as ruff, black, etc. can be # managed by Poetry but synced here before commiting code - repo: https://github.com/floatingpurr/sync_with_poetry - rev: 1.1.0 + rev: 1.2.0 hooks: - id: sync_with_poetry args: ['--db','.pre-commit-db.json'] # Format code - repo: https://github.com/psf/black - rev: 24.8.0 + rev: 25.1.0 hooks: - id: black exclude: "{{cookiecutter.repo_name}}|hooks" # Lint code - repo: https://github.com/charliermarsh/ruff-pre-commit - rev: v0.5.6 + rev: v0.11.2 hooks: - id: ruff exclude: "{{cookiecutter.repo_name}}|hooks" # Make sure the Poetry project is properly maintained - repo: https://github.com/python-poetry/poetry - rev: 1.8.0 + rev: 2.1.1 hooks: - id: poetry-check - id: poetry-lock diff --git a/.readthedocs.yml b/.readthedocs.yml index 6330175..f2d6f2b 100644 --- a/.readthedocs.yml +++ b/.readthedocs.yml @@ -3,7 +3,7 @@ version: 2 build: os: "ubuntu-22.04" tools: - python: "3.11" + python: "3.13" # Uncomment this and any needed lines below if your project has dependencies needed for install # apt_packages: # - mpich diff --git a/Dockerfile b/Dockerfile index 877e760..feeff3b 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,29 +1,62 @@ ############# # Base image ############# -FROM python:3.11-buster +FROM python:3.13-bookworm -RUN pip install poetry==1.4.2 +RUN apt-get update -y && \ + apt-get upgrade -y -ENV POETRY_NO_INTERACTION=1 \ - POETRY_VIRTUALENVS_CREATE=0 \ - POETRY_CACHE_DIR=/tmp/poetry_cache +ENV HOME=/home/pytest +ENV USERNAME=pytest +ENV PACKAGE_ROOT=${HOME}/package -ENV TEST_ROOT /test_template -ENV TEMPLATE_ROOT /template +# Create user USERNAME +RUN mkdir -p ${HOME} && \ + useradd --home-dir ${HOME} ${USERNAME} && \ + chown ${USERNAME} ${HOME} -WORKDIR ${TEST_ROOT} +############################################################ +# Switch to the user that we just created +#=========================================================== +# n.b.: we're not running as root because root's ability +# to write to read-only temp files (!) can break tests +# that check for proper I/O exceptions, for example +############################################################ +USER ${USERNAME} +WORKDIR ${HOME} + +# Needed to fix dubious ownership error when installing with Poetry +RUN git config --global --add safe.directory ${PACKAGE_ROOT} && \ + git config --global user.email "${USERNAME}@pytest.com" && \ + git config --global user.name "${USERNAME}" + +################################################## +# Create a virtual env and install poetry into it +################################################## +ENV POETRY_HOME=${HOME}"/poetry" \ + POETRY_CACHE_DIR="/tmp/poetry_cache" \ + POETRY_NO_INTERACTION=true +RUN python -m venv venv && \ + . venv/bin/activate && \ + pip install poetry ################################################################ # Copy and install Poetry dependencies (but not the actual # application, which will get installed by the entry_point -# script when we start the container) +# script when we start the container). Clear the cache after +# to lighten the container. ################################################################ COPY pyproject.toml poetry.lock . -RUN poetry install --no-root --compile && \ +RUN . venv/bin/activate && \ + poetry install --no-root --compile && \ rm -rf ${POETRY_CACHE_DIR} && \ - rm pyproject.toml && \ - mv poetry.lock poetry.lock.image + rm pyproject.toml + +#################################################3 +# Make a copy of the lock file so we can check for +# changes in the entry script (below). +#################################################3 +RUN mv poetry.lock ${HOME}/poetry.lock.image ########################## # Set-up the entry script @@ -32,17 +65,24 @@ RUN touch entry_script.sh RUN chmod a+rx entry_script.sh RUN echo \ '#!/bin/bash \n\ -if ! test -d ${TEMPLATE_ROOT} ; then\n\ - echo "The project directory has not been mounted properly. Please run the container with: docker run -v $""PWD:"${TEMPLATE_ROOT}" etc."\n\ +# Check that the container was run with a defined PACKAGE_ROOT\n\ +if ! test -d ${PACKAGE_ROOT} ; then\n\ + echo "The project directory has not been mounted properly. Please run the container with: docker run -v $""PWD:"${PACKAGE_ROOT}" etc."\n\ exit 1\n\ fi\n\ -if ! cmp -s ${TEST_ROOT}/poetry.lock.image ${TEMPLATE_ROOT}/poetry.lock ; then\n\ +# Check that the lock file hasn't changed since the container was built\n\ +# (if it has, then the container should be rebuilt)\n\ +if ! cmp -s ${HOME}/poetry.lock.image ${PACKAGE_ROOT}/poetry.lock ; then\n\ echo poetry.lock has been updated since the image was built. Please rebuild it and try again.\n\ exit 1\n\ fi\n\ -cd ${TEMPLATE_ROOT}\n\ -\n\ +# Activate the virtual env\n\ +cd ${HOME}\n\ +. venv/bin/activate\n\ +# Install the version of the package that is on disk when the container is run\n\ +cd ${PACKAGE_ROOT}\n\ poetry install --only-root\n\ echo\n\ +# Run pytest\n\ pytest' \ >> entry_script.sh diff --git a/Makefile b/Makefile index c2b4023..ccb476d 100644 --- a/Makefile +++ b/Makefile @@ -10,4 +10,4 @@ docker-build: @docker build -t ${PRJ_SLUG} . docker-tests: - @docker run -t -i --rm -v ${PRJ_PATH}:/template ${PRJ_SLUG} ./entry_script.sh + @docker run -t -i --rm -v ${PRJ_PATH}:/home/pytest/package ${PRJ_SLUG} /home/pytest/entry_script.sh diff --git a/README.md b/README.md index 82c27a6..91cd068 100644 --- a/README.md +++ b/README.md @@ -4,7 +4,7 @@

- Python 3.11 + Python 3.13 Documentation Status @@ -50,7 +50,7 @@ and answer the questions: ![ADACS Python Template Questions](https://github.com/ADACS-Australia/adacs_template_python_base/blob/main/docs/assets/adacs_python_template_cookiecutter_questions.png?raw=true) ### Install the new project -Create and activate a new virtual environment (**use Python version >= 3.11**) using your favourite method (if you don't know how to use Python environments, we advise you to go learn about them now) and install the project by running the following in the new repo directory: +Create and activate a new virtual environment (**use Python version >= 3.13**) using your favourite method (if you don't know how to use Python environments, we advise you to go learn about them now) and install the project by running the following in the new repo directory: ``` console poetry install ``` diff --git a/docs/content/configuring_services.md b/docs/content/configuring_services.md index 01bf159..a84aa19 100644 --- a/docs/content/configuring_services.md +++ b/docs/content/configuring_services.md @@ -1,17 +1,16 @@ -(configing-new)= -# Configuring a New Project +(configuring-services)= +# Configuring Services -Develpers and project owners/maintainers will require accounts with one or all of the following services to work with this codebase. This section details how these services need to be configured. Following these steps should only be necessarry - or partially necessary - if a developer chooses to fork the project. +This section details how the services leveraged by this project need to be configured. If you have just rendered a new project and followed the instructions that were given, you should have already done the following. For reference - or in case you are looking to configure a fork of a project - we repeat those instructions here. +::: {note} +The following instructions are only for owners/maintainers of this codebase. Developers don't need to worry about any of this unless they are setting up a fork of the project. +::: + +(configuring-github)= 1. [***GitHub***](https:/github.com) To work with this codebase, you will require a *GitHub* account ([go here to get one](https://github.com)). - - ::: {note} - If you have just rendered a new project and have followed the instructions that were given, you should already have done the - following. For completeness though - or in case you are looking to configure a fork of a project - we note that the following - needs to be done: - ::: Branch permissions for the main project repository should be configured to only permit merges from pull requests. To do so, navigate to `Settings->Branches->Add branch ruleset` and: @@ -22,49 +21,44 @@ Develpers and project owners/maintainers will require accounts with one or all o - select `Require status checks to pass` and add `Run all build and unit tests` from GitHub Actions as a required check This will ensure that all CI/CD tests pass before a merge to the main branch can be made. - + ::: {note} - For those who have just rendered a new project, followed the instructions and are continuing to configure it, you need to do - the following: + The following secrets do not need to be configured if you do not want to use these services. If left unconfigured, the corresponding functionality will simply be ignored. ::: Several (optional) secrets need to be configured by navigating to `Settings->Secrets->Actions` and adding the following: - + - To host the project documentation on *Read the Docs* (see below), the following secrets need to be set (see below for where to find these values): - + - **RTD_WEBHOOK_TOKEN**, and - **RTD_WEBHOOK_URL** - + - To make code releases available on the **Python Package Index** (see below), then the following secret needs to be set (see below for where to find this value): - + - **PYPI_TOKEN**, - + - To test code releases with the **Test Python Package Index** (see below), then the following secret needs to be set (see below for where to find this value): - - - **TEST_PYPI_TOKEN**, + - **TEST_PYPI_TOKEN**, 2. [__Read the Docs__](https://readthedocs.org) - ::: {note} - **Read the Docs** (*RTD*) is used to build and host the project documentation. To take advantage of this functionality, this service needs to be configured by the owner/maintainer of the project. Contributing developers or those who don't wish to have documentation published on *RTD* can ignore the following. - ::: - To (optionally) publish this project's documentation you will need a *RTD* account ([go here to get one](https://readthedocs.org)). It can be configured in either of the following ways: 1. **By connecting *RTD* to your *GitHub* account** - Ensure that your *GitHub* account has been connected. This is done automatically if you log into *RTD* with your *GitHub* credentials. If you logged in with your email, navigate to `->Settings->Connected Services` by clicking on `Connect Your Accounts` and click `Connect to GitHub`. You know your account is linked if it is listed below under `Active Services`. - Return to your *RTD* landing page by clicking on your account name at the top. Click `Import a Project`. Your *GitHub* repository should be listed here (you may need to refresh the list if it has been created recently). Import it. - - - To obtain **RTD_WEBHOOK_TOKEN**, navigate to `->Settings->API Tokens` on *Read the Docs*. If a token has been created already, you can use it. Otherwise (or if you want a token specifically for this project), create a new one. - + - To obtain **RTD_WEBHOOK_TOKEN**, navigate to `->Settings->API Tokens` on *Read the Docs*. Create a new one. - To obtain **RTD_WEBHOOK_URL**, migrate to the `Admin->Integrations` tab on the *RTD* project page. Click on your incomming webhook and get the URL there. 2. **By creating a Generic Webhook** - - Navigate to the `Admin->Integrations` tab on the *RTD* project page and click `Add integration`. Then select `Generic API incoming webhook` from the dropdown and click `Add integration`. + - If you do not have your *RTD* account connected to *GitHub*, import your project manually by + clicking `Import a Project->Import Manually` and providing the details of your *GitHub* repo. + + - Navigate to your new project and click `Admin->Integrations->Add integration` and select `Generic API incoming webhook` from the dropdown. - - To obtain **RTD_WEBHOOK_URL** and **RTD_WEBHOOK_TOKEN**, migrate to the `Admin->Integrations` tab on the *RTD* project page and click on your incomming webhook. + - Values for **RTD_WEBHOOK_URL** and **RTD_WEBHOOK_TOKEN** are given when you create the webhook, but if you need to retrieve them late, migrate to the `Admin->Integrations` tab on the *RTD* project page and click on your incomming webhook. Once properly configured, the documentation for this project should build automatically on *RTD* every time you [generate a new release](#new-release). @@ -75,20 +69,15 @@ Develpers and project owners/maintainers will require accounts with one or all o (config-pypi)= 3. The [__Python Package Index (*PyPI*)__](https://pypi.org) - ::: {note} - **The Python Package Index** (*PyPI*) and **The Test Python Package Index (*TestPyPI*) are used to publish code releases. To take advantage of this functionality, this service needs to be configured by the owner/maintainer of the project. Contributing developers or those who don't wish to have documentation published on *RTD* can ignore the following. - ::: - To (optionally) publish releases of this project's code you will need a *PyPI* account ([go here to get one](https://pypi.org)). To (optionally) generate test releases, you will need a *TestPyPI* account. They operate the same way and can both be configured as follows: + - An API token will need to be created and added to your *GitHub* project as **PYPI_TOKEN** (as detailed above). This can be generated from the *PyPI* UI by navigating to `Account Settings->Add API Token`. **In the first instance - before the project exists on your account - generate a token with `Entire Account` scope. Once the project has been published for a first time to *PyPI*, the initial token can be deleted and a new one generated with an project scope selected to be that of the project. Make sure to update the *GitHub* secret value once you have done so.** - - An API token will need to be created and added to your *GitHub* project as **PYPI_TOKEN** (as detailed above). This can be generated from the *PyPI* UI by navigating to `Account Settings->Add API Token`. In the first instance - before the project exists on your account - generate a token with `Entire Account` scope. Once the project has been published for a first time to *PyPI*, the initial token can be deleted and a new one generated with an project scope selected to be that of the project. Make sure to update the *GitHub* secret value once you have done so. - - - Repeat this process for *TestPyPI* if you want to be able to generate test releases, adding it as a secret to your *GitHub* repo with the name **TEST_PYPI_TOKEN** + - Repeat this process for *TestPyPI* if you want to be able to generate test releases, adding it as a secret to your *GitHub* repo with the name **TEST_PYPI_TOKEN** ::: {note} To create a test release, flag it as a `pre-release` through the *GitHub* interface when you generate a release, and it will be published on *test.PyPI.org* rather than *PyPI.org*. If this token is not defined, publication will not happen on either, if this option is flagged. ::: - ::: {note} + ::: {warning} Although `poetry` can be used to directly publish this project to *PyPI*, users should not do this. The proper way to publish the project is through the *GitHub* interface, which leverages the *GitHub Workflows* of this project to ensure the enforcement of project standards before a new version can be created. ::: diff --git a/docs/content/development_guidelines.md b/docs/content/development_guidelines.md index 613b1ba..1d41b9e 100644 --- a/docs/content/development_guidelines.md +++ b/docs/content/development_guidelines.md @@ -1,8 +1,10 @@ -(developing-new)= -# Guidelines for Developing a New Project +(development-guidelines)= +# Development Guidelines -This section provides guidelines that should be followed when developing a new project with this template. It goes through what -gets set-up when you render a new project and explains why things have been set-up they way they have. +This section provides details on how to configure and/or develop this codebase. For details specific to: + +1. maintaining the template served by this codebase, see [Maintaining This Template](#template-maintenance). +2. configuring the services used by this codebase, see [Configuring Services](#configuring-services). ## Continuos Integration/Continuous Deployment (CI/CD) Workflow @@ -24,15 +26,14 @@ workflows can be found within the `./.github/workflows/` directory and include: 3. **publish.yml** - This workflow is run whenever a new release is generated through *GitHub* (see below for details on how to do this). Documentation is updated on *Read the Docs* and a new version of the code is published on the *Python Package Index* (*PyPI*). + This workflow is run whenever a new release is generated through *GitHub* (see below for details on how to do this). Documentation is updated on *Read the Docs* (if configured to do so) and a new version of the code is published on the *Python Package Index* (*PyPI*; if configured to do so). ## Setting-up the Code A local development copy of the code base can be obtained and configured as follows: * Navigate to the *GitHub* page hosting the project -* If you want to fork the code so that you work on your own version of the repository (not generally needed or - recommended): +* If you want to fork the code so that you work on your own version of the repository (not generally needed or recommended): - Click on the `fork` button at the top of the page; - Edit the details you want to have for the new repoitory; and - Press `Create fork`. @@ -41,7 +42,7 @@ A local development copy of the code base can be obtained and configured as foll * Generate a local copy using `git clone `; ::: {note} -Although not strictly necessary, it is recommended that you configure the branch permissions of any forked repositories as detailed in the *GitHub* configuration section below. +Although not strictly necessary, it is recommended that you configure the branch permissions of any forked repositories as detailed in the [*GitHub* configuration section](#configuring-github). ::: ## Poetry and Python environments for development @@ -87,7 +88,7 @@ In the following, we lay-out some important guidelines for developing on this co ### Branches -***Development should never be conducted on the `main` branch***. If *GitHub* has been properly configured (see below), then merges to this branch are limited to Pull Requests (PRs) only. Once a PR is opened for the `main` branch, the project tests are run. When it is closed and code is committed to the main branch, the project version is automatically incremented (see below). +***Development should never be conducted on the `main` branch***. If *GitHub* has been properly configured (see [here](#configuring-github)), then merges to this branch are limited to Pull Requests (PRs) only. Once a PR is opened for the `main` branch, the project tests are run. When it is closed and code is committed to the main branch, the project version is automatically incremented (see below). ### Versioning @@ -107,14 +108,32 @@ Make sure you think carefully about what type of changes you are committing. If ### Tests -*PyTest* is used to run tests for this codebase. Make sure you run them before submitting any code to a PR by -executing the following from the project root directory: +*PyTest* is used to run tests for this codebase. Make sure you run them before submitting any code to a PR by executing the following from the project root directory: ``` console $ pytest ``` -Some further comments about how testing has been configured for this project: +When testing, temporary projects get created and need to be installed into an environment before tests can be run, documentation builds checked, etc. Be warned that this can both pollute your development environment and lead to unreliable tests due to the bleeding of state from past test runs to new runs. + +To address this, a `Dockerfile` and `Makefile` are provided for running tests in a container. Run the +following to build the container: + +``` console +make docker-build +``` + +Run the following to run the tests in the container: + +``` console +make docker-tests +``` + +::: {note} +Running the tests in a container on MacOS is **slow**: 10 mins on an M1 Mac vs 1 min in the CI/CD. Optimisation suggestions welcome. +::: + +Some further comments about how testing has been configured for projects rendered bt the ADACS Base Template: #### Coverage diff --git a/docs/content/template_maintenance.md b/docs/content/template_maintenance.md index b7e58eb..1f89451 100644 --- a/docs/content/template_maintenance.md +++ b/docs/content/template_maintenance.md @@ -1,38 +1,32 @@ +(template-maintenance)= # Maintaining This Template -Developers maintaining this template codebase should be aware of the development -guidelines presented [here](#developing-new). This section discusses issues specific to +Developers maintaining this template codebase should be aware of the development guidelines presented [here](#development-guidelines). This section discusses issues specific to the maintenance of this template. -## Running tests +## Some things to note about Cookiecutter templates -When testing, temporary projects get created and need to be installed into an environment before tests can be run, documentation builds checked, etc. Be warned that this can both pollute your development environment and lead to unreliable tests due to the bleeding of state from past test runs to new runs. +The following are some things that you might not know about Cookiecutter templates that you may need to be aware of if you are +developing on this template: -To address this, a `Dockerfile` and `Makefile` are provided for running tests in a container. Run the -following to build the container: +### Hooks -``` console -make docker-build -``` +There are two files in the `hooks` directory: one which gets run *before* a tempalte gets rendered and one which gets run *after* a template gets rendered. **Both of these files are actually Jinja2 templates.** As a result, these files can legitimately possess invalid code. **Be particularly careful if your code editor is configured to autoformat code, since this can cause unintended bugs in these files.** -Run the following to run the tests in the container: +### Dependencies +If any code in the `local_extensions` or `hooks` directories import packages that are not part of the Python standard library, the user will need to have those packages installed when they attempt to render the template. If they installed `cookiecutter` with `pipx` then this can be done as follows (for a dependency named `dependency_name`): ``` console -make docker-tests +pipx inject cookiecutter dependency_name ``` -::: {note} -Running the tests in a container on MacOS is **slow**: 10 mins on an M1 Mac vs 1 min in the CI/CD. Optimisation suggestions welcome. -::: - -## Some things to note about Cookiecutter templates - -The following are some things that you might not know about Cookiecutter templates that you may need to be aware of if you are -developing on this template: - -### Hooks +Otherwise they should install the dependency into the directory they +installed `cookiecutter` into as follows: +``` console +pip install dependency_name +``` -There are two files in the `hooks` directory: one which gets run *before* a tempalte gets rendered and one which gets run *after* a template gets rendered. **Both of these files are actually Jinja2 templates.** As a result, these files can legitimately possess invalid code. **Be particularly careful if your code editor is configured to autoformat code, since this can cause unintended bugs in these files.** +Make sure they are alerted to this issue in the documentation and provided instructions for installing the needed dependencies. This is particularly important in the *Getting started* section of the README. ## Changes to documentation @@ -41,4 +35,4 @@ documentation. Things to pay attention to are: 1. The project and template READMEs 2. The INSTRUCTIONS.template file -3. The documentation in the template and this documentation here +3. The documentation in both this codebase and in the template diff --git a/hooks/post_gen_project.py b/hooks/post_gen_project.py index 839fdc8..b19629e 100644 --- a/hooks/post_gen_project.py +++ b/hooks/post_gen_project.py @@ -82,7 +82,7 @@ def venv(venv_type: str) -> None: # result = subprocess.run(["poetry", "config", "--local", "virtualenvs.create", "true"]) pass elif venv_type == "pyenv": - # result = subprocess.run(["pyenv", "virtualenv", "3.11", "{{cookiecutter.__project_slug}}"]) + # result = subprocess.run(["pyenv", "virtualenv", "3.13", "{{cookiecutter.__project_slug}}"]) # result = subprocess.run(["pyenv", "local", "{{cookiecutter.__project_slug}}"]) pass elif venv_type == "Conda": diff --git a/local_extensions/__init__.py b/local_extensions/__init__.py index 33ae5ac..5d2baa9 100644 --- a/local_extensions/__init__.py +++ b/local_extensions/__init__.py @@ -11,7 +11,9 @@ def __init__(self, environment: Environment): """Initialize the extension with the given environment.""" super().__init__(environment) - environment.globals.update({"current_year": datetime.datetime.utcnow().year}) + environment.globals.update( + {"current_year": datetime.datetime.now(datetime.UTC).year} + ) class UnderlineExtension(Extension): diff --git a/poetry.lock b/poetry.lock index 42a012c..6b22d8e 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,14 +1,15 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. +# This file is automatically @generated by Poetry 2.1.1 and should not be changed by hand. [[package]] name = "alabaster" -version = "0.7.16" +version = "1.0.0" description = "A light, configurable Sphinx theme" optional = false -python-versions = ">=3.9" +python-versions = ">=3.10" +groups = ["docs"] files = [ - {file = "alabaster-0.7.16-py3-none-any.whl", hash = "sha256:b46733c07dce03ae4e150330b975c75737fa60f0a7c591b6c8bf4928a28e2c92"}, - {file = "alabaster-0.7.16.tar.gz", hash = "sha256:75a8b99c28a5dad50dd7f8ccdd447a121ddb3892da9e53d1ca5cca3106d58d65"}, + {file = "alabaster-1.0.0-py3-none-any.whl", hash = "sha256:fc6786402dc3fcb2de3cabd5fe455a2db534b371124f1f21de8731783dec828b"}, + {file = "alabaster-1.0.0.tar.gz", hash = "sha256:c00dca57bca26fa62a6d7d0a9fcce65f3e026e9bfe33e9c538fd3fbb2144fd9e"}, ] [[package]] @@ -17,6 +18,7 @@ version = "1.3.0" description = "Better dates & times for Python" optional = false python-versions = ">=3.8" +groups = ["main", "test"] files = [ {file = "arrow-1.3.0-py3-none-any.whl", hash = "sha256:c728b120ebc00eb84e01882a6f5e7927a53960aa990ce7dd2b10f39005a67f80"}, {file = "arrow-1.3.0.tar.gz", hash = "sha256:d4540617648cb5f895730f1ad8c82a65f2dad0166f57b75f3ca54759c4d67a85"}, @@ -32,17 +34,18 @@ test = ["dateparser (==1.*)", "pre-commit", "pytest", "pytest-cov", "pytest-mock [[package]] name = "babel" -version = "2.15.0" +version = "2.17.0" description = "Internationalization utilities" optional = false python-versions = ">=3.8" +groups = ["docs"] files = [ - 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renders display math in HTML via JavaScript" optional = false python-versions = ">=3.5" +groups = ["docs"] files = [ {file = "sphinxcontrib-jsmath-1.0.1.tar.gz", hash = "sha256:a9925e4a4587247ed2191a22df5f6970656cb8ca2bd6284309578f2153e0c4b8"}, {file = "sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl", hash = "sha256:2ec2eaebfb78f3f2078e73666b1415417a116cc848b72e5172e596c871103178"}, @@ -1086,6 +1170,7 @@ version = "2.0.0" description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp documents" optional = false python-versions = ">=3.9" +groups = ["docs"] files = [ {file = "sphinxcontrib_qthelp-2.0.0-py3-none-any.whl", hash = "sha256:b18a828cdba941ccd6ee8445dbe72ffa3ef8cbe7505d8cd1fa0d42d3f2d5f3eb"}, {file = "sphinxcontrib_qthelp-2.0.0.tar.gz", hash = "sha256:4fe7d0ac8fc171045be623aba3e2a8f613f8682731f9153bb2e40ece16b9bbab"}, @@ -1102,6 +1187,7 @@ version = "2.0.0" description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)" optional = false python-versions = ">=3.9" +groups = ["docs"] files = [ {file = "sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl", hash = "sha256:6e2cb0eef194e10c27ec0023bfeb25badbbb5868244cf5bc5bdc04e4464bf331"}, {file = "sphinxcontrib_serializinghtml-2.0.0.tar.gz", hash = "sha256:e9d912827f872c029017a53f0ef2180b327c3f7fd23c87229f7a8e8b70031d4d"}, @@ -1118,6 +1204,7 @@ version = "1.3" description = "The most basic Text::Unidecode port" optional = false python-versions = "*" +groups = ["main", "test"] files = [ {file = "text-unidecode-1.3.tar.gz", hash = "sha256:bad6603bb14d279193107714b288be206cac565dfa49aa5b105294dd5c4aab93"}, {file = "text_unidecode-1.3-py2.py3-none-any.whl", hash = "sha256:1311f10e8b895935241623731c2ba64f4c455287888b18189350b67134a822e8"}, @@ -1125,13 +1212,14 @@ files = [ [[package]] name = "types-python-dateutil" -version = "2.9.0.20240316" +version = "2.9.0.20241206" description = "Typing stubs for python-dateutil" optional = false python-versions = ">=3.8" +groups = ["main", "test"] files = [ - {file = "types-python-dateutil-2.9.0.20240316.tar.gz", hash = "sha256:5d2f2e240b86905e40944dd787db6da9263f0deabef1076ddaed797351ec0202"}, - {file = "types_python_dateutil-2.9.0.20240316-py3-none-any.whl", hash = "sha256:6b8cb66d960771ce5ff974e9dd45e38facb81718cc1e208b10b1baccbfdbee3b"}, + {file = "types_python_dateutil-2.9.0.20241206-py3-none-any.whl", hash = "sha256:e248a4bc70a486d3e3ec84d0dc30eec3a5f979d6e7ee4123ae043eedbb987f53"}, + {file = "types_python_dateutil-2.9.0.20241206.tar.gz", hash = "sha256:18f493414c26ffba692a72369fea7a154c502646301ebfe3d56a04b3767284cb"}, ] [[package]] @@ -1140,6 +1228,7 @@ version = "4.12.2" description = "Backported and Experimental Type Hints for Python 3.8+" optional = false python-versions = ">=3.8" +groups = ["test"] files = [ {file = "typing_extensions-4.12.2-py3-none-any.whl", hash = "sha256:04e5ca0351e0f3f85c6853954072df659d0d13fac324d0072316b67d7794700d"}, {file = "typing_extensions-4.12.2.tar.gz", hash = "sha256:1a7ead55c7e559dd4dee8856e3a88b41225abfe1ce8df57b7c13915fe121ffb8"}, @@ -1147,30 +1236,32 @@ files = [ [[package]] name = "urllib3" -version = "2.2.2" +version = "2.3.0" description = "HTTP library with thread-safe connection pooling, file post, and more." optional = false -python-versions = ">=3.8" +python-versions = ">=3.9" +groups = ["main", "docs", "test"] files = [ - {file = "urllib3-2.2.2-py3-none-any.whl", hash = "sha256:a448b2f64d686155468037e1ace9f2d2199776e17f0a46610480d311f73e3472"}, - {file = "urllib3-2.2.2.tar.gz", hash = "sha256:dd505485549a7a552833da5e6063639d0d177c04f23bc3864e41e5dc5f612168"}, + {file = "urllib3-2.3.0-py3-none-any.whl", hash = "sha256:1cee9ad369867bfdbbb48b7dd50374c0967a0bb7710050facf0dd6911440e3df"}, + {file = "urllib3-2.3.0.tar.gz", hash = "sha256:f8c5449b3cf0861679ce7e0503c7b44b5ec981bec0d1d3795a07f1ba96f0204d"}, ] [package.extras] -brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)"] +brotli = ["brotli (>=1.0.9) ; platform_python_implementation == \"CPython\"", "brotlicffi (>=0.8.0) ; platform_python_implementation != \"CPython\""] h2 = ["h2 (>=4,<5)"] socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"] zstd = ["zstandard (>=0.18.0)"] [[package]] name = "virtualenv" -version = "20.26.3" +version = "20.29.3" description = "Virtual Python Environment builder" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" +groups = ["test"] files = [ - {file = "virtualenv-20.26.3-py3-none-any.whl", hash = "sha256:8cc4a31139e796e9a7de2cd5cf2489de1217193116a8fd42328f1bd65f434589"}, - {file = "virtualenv-20.26.3.tar.gz", hash = "sha256:4c43a2a236279d9ea36a0d76f98d84bd6ca94ac4e0f4a3b9d46d05e10fea542a"}, + {file = "virtualenv-20.29.3-py3-none-any.whl", hash = "sha256:3e3d00f5807e83b234dfb6122bf37cfadf4be216c53a49ac059d02414f819170"}, + {file = "virtualenv-20.29.3.tar.gz", hash = "sha256:95e39403fcf3940ac45bc717597dba16110b74506131845d9b687d5e73d947ac"}, ] [package.dependencies] @@ -1180,9 +1271,9 @@ platformdirs = ">=3.9.1,<5" [package.extras] docs = ["furo (>=2023.7.26)", "proselint (>=0.13)", "sphinx (>=7.1.2,!=7.3)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"] -test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.4)", "pytest-env (>=0.8.2)", "pytest-freezer (>=0.4.8)", "pytest-mock (>=3.11.1)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=68)", "time-machine (>=2.10)"] +test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.4)", "pytest-env (>=0.8.2)", "pytest-freezer (>=0.4.8) ; platform_python_implementation == \"PyPy\" or platform_python_implementation == \"CPython\" and sys_platform == \"win32\" and python_version >= \"3.13\"", "pytest-mock (>=3.11.1)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=68)", "time-machine (>=2.10) ; platform_python_implementation == \"CPython\""] [metadata] -lock-version = "2.0" -python-versions = " >=3.11" -content-hash = "0364d794a0b5916955cff029830498e1665bef0b597af1d3ccdae0def2264b31" +lock-version = "2.1" +python-versions = " >=3.13" +content-hash = "40f76ba563ca51f545ff158812571e9b2a83fd7bb80b4f50cf35eebd33429f08" diff --git a/pyproject.toml b/pyproject.toml index 87bd1c7..ac19005 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -12,25 +12,25 @@ homepage = "https://github.com/ADACS-Australia/adacs_template_python_base" documentation = "https://adacs-base-python-template.readthedocs.io/en/latest/" [tool.poetry.dependencies] -python = " >=3.11" +python = " >=3.13" rich = "^13" cookiecutter = "^2" [tool.poetry.group.docs.dependencies] -Sphinx = "^6" -sphinx-rtd-theme = "^1" -sphinx-click = "^4" +Sphinx = "^8" +sphinx-rtd-theme = "^3" +sphinx-click = "^6" sphinx-copybutton = "^0" -myst-parser = "^1" +myst-parser = "^4" [tool.poetry.group.test.dependencies] -pytest = "^7" +pytest = "^8" pytest-mock = "^3" pytest-cookies = "^0" -black = "^24" +black = "^25" ruff = "^0" mypy = "^1" -pre-commit = "^3" +pre-commit = "^4" # This configures the Poetry plugin which enables dynamic versioning via the repo tags # Note the changes that are also needed to the [build-system] config below. @@ -39,6 +39,9 @@ enable = true vcs = "git" style = "semver" +[tool.poetry.requires-plugins] +poetry-dynamic-versioning = { version = ">=1.0.0,<2.0.0", extras = ["plugin"] } + [tool.pytest.ini_options] pythonpath = ["./tests", "./"] # relative to root directory addopts = "--ignore={{cookiecutter.repo_name}}" @@ -84,5 +87,5 @@ ignore = [ convention = "numpy" [build-system] -requires = ["poetry-core>=1.0.0", "poetry-dynamic-versioning"] +requires = ["poetry-core>=2.0.0", "poetry-dynamic-versioning"] build-backend = "poetry_dynamic_versioning.backend" diff --git a/tests/test_template.py b/tests/test_template.py index 2dfc511..6b7fbe4 100644 --- a/tests/test_template.py +++ b/tests/test_template.py @@ -16,24 +16,29 @@ def bake_path(cookies, request): exit_code_expected = request.param[1] exception_expected = request.param[2] with bake_in_temp_dir(cookies, extra_context=extra_context) as result: - assert result.project_path.is_dir() assert result.exit_code == exit_code_expected assert result.exception is exception_expected - run_inside_dir("poetry install", result.project_path) == 0 + assert result.project_path.is_dir() + # Create a virtual env for testing this bake + assert run_inside_dir( + "python -m venv venv", result.project_path, source_env=False + ) + # Install the baked project into its environment + assert run_inside_dir("poetry install", result.project_path) yield result.project_path def test_bake_and_run_tests(bake_path): - run_inside_dir("pytest", bake_path) == 0 + assert run_inside_dir("poetry run pytest", bake_path) def test_template_make_docs(bake_path): - run_inside_dir("make docs", bake_path) == 0 + assert run_inside_dir("poetry run make docs", bake_path) def test_template_run_black(bake_path): - run_inside_dir("black .", bake_path) == 0 + assert run_inside_dir("poetry run black .", bake_path) def test_template_run_ruff(bake_path): - run_inside_dir("ruff check .", bake_path) == 0 + assert run_inside_dir("poetry run ruff check .", bake_path) diff --git a/tests/utils.py b/tests/utils.py index 8cd2157..b10fd19 100644 --- a/tests/utils.py +++ b/tests/utils.py @@ -37,14 +37,51 @@ def bake_in_temp_dir(cookies: Cookies, *args, **kwargs): rmtree(str(result.project_path)) -def run_inside_dir(command: str, path: Path): +def run_inside_venv(command, venv_path): + activate_script = os.path.join( + venv_path, "venv", "bin", "activate" + ) # For Linux/macOS + + if os.name == "nt": # Windows + process = subprocess.Popen( + [f"{activate_script} && {command}"], + shell=True, + executable=os.environ["COMSPEC"], + ) + else: # macOS and Linux + process = subprocess.Popen( + [f"source {activate_script} && {command}"], + shell=True, + executable="/bin/bash", + ) + process.wait() + + return process.returncode + + +def run_inside_dir(command: str, path: Path, source_env=True): """ Run a command from inside a given directory, returning the exit status :param command: Command that will be executed :param path: String, path of the directory the command is being run. """ with inside_dir(path): - return subprocess.check_call(shlex.split(command)) + if source_env: + result = run_inside_venv(command, path) + else: + result = subprocess.check_call(shlex.split(command)) + return result == 0 + + +def source_inside_dir(command: str, path: Path): + """ + Source a shell script from inside a given directory, returning the exit status + :param command: Script that will be sourced + :param path: String, path of the directory the command is being run. + """ + with inside_dir(path): + result = subprocess.check_call(shlex.split(command)) + return result def check_output_inside_dir(command: str, path: Path): diff --git a/{{cookiecutter.repo_name}}/.github/workflows/publish.yml b/{{cookiecutter.repo_name}}/.github/workflows/publish.yml index 7482537..5d4d8d2 100644 --- a/{{cookiecutter.repo_name}}/.github/workflows/publish.yml +++ b/{{cookiecutter.repo_name}}/.github/workflows/publish.yml @@ -76,7 +76,7 @@ jobs: - name: Set-up Python uses: actions/setup-python@v5 with: - python-version: '3.11' + python-version: '3.13' cache: 'poetry' # Configure project diff --git a/{{cookiecutter.repo_name}}/.github/workflows/pull_request.yml b/{{cookiecutter.repo_name}}/.github/workflows/pull_request.yml index b82d655..a0a7bf6 100644 --- a/{{cookiecutter.repo_name}}/.github/workflows/pull_request.yml +++ b/{{cookiecutter.repo_name}}/.github/workflows/pull_request.yml @@ -76,7 +76,7 @@ jobs: - name: Set-up Python uses: actions/setup-python@v5 with: - python-version: '3.11' + python-version: '3.13' cache: 'poetry' # Configure project diff --git a/{{cookiecutter.repo_name}}/.readthedocs.yml b/{{cookiecutter.repo_name}}/.readthedocs.yml index 6330175..f2d6f2b 100644 --- a/{{cookiecutter.repo_name}}/.readthedocs.yml +++ b/{{cookiecutter.repo_name}}/.readthedocs.yml @@ -3,7 +3,7 @@ version: 2 build: os: "ubuntu-22.04" tools: - python: "3.11" + python: "3.13" # Uncomment this and any needed lines below if your project has dependencies needed for install # apt_packages: # - mpich diff --git a/{{cookiecutter.repo_name}}/INSTRUCTIONS.template b/{{cookiecutter.repo_name}}/INSTRUCTIONS.template index 8847331..0b1697e 100644 --- a/{{cookiecutter.repo_name}}/INSTRUCTIONS.template +++ b/{{cookiecutter.repo_name}}/INSTRUCTIONS.template @@ -4,9 +4,9 @@ *Now that your template has been rendered, we recommend configuring it as follows:* -1. **Create and activate a Python 3.11 environment** +1. **Create and activate a Python 3.13 environment** -Use your favourite method to *create and activate* a Python 3.11 environment for your development. +Use your favourite method to *create and activate* a Python 3.13 environment for your development. 2. **Install the project and all dependencies** diff --git a/{{cookiecutter.repo_name}}/docs/Makefile b/{{cookiecutter.repo_name}}/docs/Makefile index 795e840..bed1cf1 100644 --- a/{{cookiecutter.repo_name}}/docs/Makefile +++ b/{{cookiecutter.repo_name}}/docs/Makefile @@ -37,7 +37,6 @@ clean: clean-docs clean-docs: @rm -rf build docs/_build - @rm -f docs/make.bat docs/Makefile @rm -rf docs/_apidoc/*.rst apidoc: clean-docs @@ -47,11 +46,11 @@ apidoc: clean-docs @echo " version: ${PKG_VERSION}" @sphinx-apidoc -o docs/_apidoc --doc-project ${PKG_PROJECT} --doc-author "${PKG_AUTHOR}" --doc-version ${PKG_VERSION} --doc-release ${PKG_RELEASE} -t docs/_templates -T --extensions sphinx_click,sphinx.ext.doctest,sphinx.ext.mathjax,sphinx.ext.autosectionlabel,myst_parser,sphinx.ext.todo,sphinx_copybutton,sphinx.ext.napoleon -d 3 -E -f -F python/${PKG_PROJECT} ${PATH_EXCLUDE_LIST} +# Add any actions here which extend the content of the documentation beyond the repo's content +# Make sure this target remains, even if it does nothing, because it gets called in .readthedocs.yml +# +# The following are generated by apidoc; not needed; causes sphinx to throw warnings, etc. content: apidoc - # Add any actions here which extend the content of the documentation beyond the repo's content - # Make sure this target remains, even if it does nothing, because it gets called in .readthedocs.yml - # - # The following are generated by apidoc; not needed; causes sphinx to throw warnings, etc. @rm -f docs/_apidoc/conf.py @rm -f docs/_apidoc/index.rst @rm -f docs/_apidoc/make.bat diff --git a/{{cookiecutter.repo_name}}/docs/content/configuring_services.md b/{{cookiecutter.repo_name}}/docs/content/configuring_services.md new file mode 100644 index 0000000..4eee784 --- /dev/null +++ b/{{cookiecutter.repo_name}}/docs/content/configuring_services.md @@ -0,0 +1,83 @@ +(configuring-services)= +# Configuring Services + +This section details how the services leveraged by this project need to be configured. If you have just rendered a new project and followed the instructions that were given, you should have already done the following. For reference - or in case you are looking to configure a fork of a project - we repeat those instructions here. + +::: {note} +The following instructions are only for owners/maintainers of this codebase. Developers don't need to worry about any of this unless they are setting up a fork of the project. +::: + +(configuring-github)= +1. [***GitHub***](https:/github.com) + + To work with this codebase, you will require a *GitHub* account ([go here to get one](https://github.com)). + + Branch permissions for the main project repository should be configured to only permit merges from pull requests. To do so, navigate to `Settings->Branches->Add branch ruleset` and: + + - give the Ruleset whatever name you'd like (e.g. `Protect Main`) + - set `Enforecement status` to `Active` + - add a `Target Branch` targeting criteria by pattern and type `main` + - select `Require a pull request before merging` + - select `Require status checks to pass` and add `Run all build and unit tests` from GitHub Actions as a required check + + This will ensure that all CI/CD tests pass before a merge to the main branch can be made. + + ::: {note} + The following secrets do not need to be configured if you do not want to use these services. If left unconfigured, the corresponding functionality will simply be ignored. + ::: + + Several (optional) secrets need to be configured by navigating to `Settings->Secrets->Actions` and adding the following: + + - To host the project documentation on *Read the Docs* (see below), the following secrets need to be set (see below for where to find these values): + + - **RTD_WEBHOOK_TOKEN**, and + - **RTD_WEBHOOK_URL** + + - To make code releases available on the **Python Package Index** (see below), then the following secret needs to be set (see below for where to find this value): + + - **PYPI_TOKEN**, + + - To test code releases with the **Test Python Package Index** (see below), then the following secret needs to be set (see below for where to find this value): + + - **TEST_PYPI_TOKEN**, + +2. [__Read the Docs__](https://readthedocs.org) + + To (optionally) publish this project's documentation you will need a *RTD* account ([go here to get one](https://readthedocs.org)). It can be configured in either of the following ways: + + 1. **By connecting *RTD* to your *GitHub* account** + - Ensure that your *GitHub* account has been connected. This is done automatically if you log into *RTD* with your *GitHub* credentials. If you logged in with your email, navigate to `->Settings->Connected Services` by clicking on `Connect Your Accounts` and click `Connect to GitHub`. You know your account is linked if it is listed below under `Active Services`. + + - Return to your *RTD* landing page by clicking on your account name at the top. Click `Import a Project`. Your *GitHub* repository should be listed here (you may need to refresh the list if it has been created recently). Import it. + - To obtain **RTD_WEBHOOK_TOKEN**, navigate to `->Settings->API Tokens` on *Read the Docs*. Create a new one. + - To obtain **RTD_WEBHOOK_URL**, migrate to the `Admin->Integrations` tab on the *RTD* project page. Click on your incomming webhook and get the URL there. + + 2. **By creating a Generic Webhook** + - If you do not have your *RTD* account connected to *GitHub*, import your project manually by + clicking `Import a Project->Import Manually` and providing the details of your *GitHub* repo. + + - Navigate to your new project and click `Admin->Integrations->Add integration` and select `Generic API incoming webhook` from the dropdown. + + - Values for **RTD_WEBHOOK_URL** and **RTD_WEBHOOK_TOKEN** are given when you create the webhook, but if you need to retrieve them late, migrate to the `Admin->Integrations` tab on the *RTD* project page and click on your incomming webhook. + + Once properly configured, the documentation for this project should build automatically on *RTD* every time you [generate a new release](#new-release). + + ::: {note} + Make sure **RTD_WEBHOOK_URL** starts with `https://`. Prepend it if not. + ::: + +(config-pypi)= +3. The [__Python Package Index (*PyPI*)__](https://pypi.org) + + To (optionally) publish releases of this project's code you will need a *PyPI* account ([go here to get one](https://pypi.org)). To (optionally) generate test releases, you will need a *TestPyPI* account. They operate the same way and can both be configured as follows: + - An API token will need to be created and added to your *GitHub* project as **PYPI_TOKEN** (as detailed above). This can be generated from the *PyPI* UI by navigating to `Account Settings->Add API Token`. **In the first instance - before the project exists on your account - generate a token with `Entire Account` scope. Once the project has been published for a first time to *PyPI*, the initial token can be deleted and a new one generated with a corresponding `Project` scope. Make sure to update the *GitHub* secret value once you have done so.** + + - Repeat this process for *TestPyPI* if you want to be able to generate test releases, adding it as a secret to your *GitHub* repo with the name **TEST_PYPI_TOKEN** + + ::: {note} + To create a test release, flag it as a `pre-release` through the *GitHub* interface when you generate a release, and it will be published on *test.PyPI.org* rather than *PyPI.org*. If this token is not defined, publication will not happen on either, if this option is flagged. + ::: + + ::: {warning} + Although `poetry` can be used to directly publish this project to *PyPI*, users should not do this. The proper way to publish the project is through the *GitHub* interface, which leverages the *GitHub Workflows* of this project to ensure the enforcement of project standards before a new version can be created. + ::: diff --git a/{{cookiecutter.repo_name}}/docs/content/notes_for_developers.md b/{{cookiecutter.repo_name}}/docs/content/development_guidelines.md similarity index 65% rename from {{cookiecutter.repo_name}}/docs/content/notes_for_developers.md rename to {{cookiecutter.repo_name}}/docs/content/development_guidelines.md index 8f3f8b0..7ebc06c 100644 --- a/{{cookiecutter.repo_name}}/docs/content/notes_for_developers.md +++ b/{{cookiecutter.repo_name}}/docs/content/development_guidelines.md @@ -1,6 +1,7 @@ -# Notes for Developers +(development-guidelines)= +# Development Guidelines -This section provides details on how to configure and/or develop this codebase. +This section provides details on how to configure and/or develop this codebase. For details specific to configuring the services used by this codebase, see [Configuring Services](#configuring-services). ## Continuos Integration/Continuous Deployment (CI/CD) Workflow @@ -22,15 +23,14 @@ workflows can be found within the `./.github/workflows/` directory and include: 3. **publish.yml** - This workflow is run whenever a new release is generated through *GitHub* (see below for details on how to do this). Documentation is updated on *Read the Docs* and a new version of the code is published on the *Python Package Index* (*PyPI*). + This workflow is run whenever a new release is generated through *GitHub* (see below for details on how to do this). Documentation is updated on *Read the Docs* (if configured to do so) and a new version of the code is published on the *Python Package Index* (*PyPI*; if configured to do so). ## Setting-up the Code A local development copy of the code base can be obtained and configured as follows: * Navigate to the *GitHub* page hosting the project -* If you want to fork the code so that you work on your own version of the repository (not generally needed or - recommended): +* If you want to fork the code so that you work on your own version of the repository (not generally needed or recommended): - Click on the `fork` button at the top of the page; - Edit the details you want to have for the new repoitory; and - Press `Create fork`. @@ -39,7 +39,7 @@ A local development copy of the code base can be obtained and configured as foll * Generate a local copy using `git clone `; ::: {note} -Although not strictly necessary, it is recommended that you configure the branch permissions of any forked repositories as detailed in the *GitHub* configuration section below. +Although not strictly necessary, it is recommended that you configure the branch permissions of any forked repositories as detailed in the [*GitHub* configuration section](#configuring-github). ::: ## Poetry and Python environments for development @@ -71,7 +71,7 @@ Poetry is used to manage this project ([see here for an introduction](https://py ## Installing Development Dependencies -Once the code is locally installed, development dependencies should be installed by moving to the project's root directory and executing the following: +Once the code is locally installed, dependencies should be installed by moving to the project's root directory and executing the following: ``` console $ poetry install @@ -85,7 +85,7 @@ In the following, we lay-out some important guidelines for developing on this co ### Branches -***Development should never be conducted on the `main` branch***. If *GitHub* has been properly configured (see below), then merges to this branch are limited to Pull Requests (PRs) only. Once a PR is opened for the `main` branch, the project tests are run. When it is closed and code is committed to the main branch, the project version is automatically incremented (see below). +***Development should never be conducted on the `main` branch***. If *GitHub* has been properly configured (see [here](#configuring-github)), then merges to this branch are limited to Pull Requests (PRs) only. Once a PR is opened for the `main` branch, the project tests are run. When it is closed and code is committed to the main branch, the project version is automatically incremented (see below). ### Versioning @@ -105,15 +105,12 @@ Make sure you think carefully about what type of changes you are committing. If ### Tests -*PyTest* is used to run tests for this codebase. Make sure you run them before submitting any code to a PR by -executing the following from the project root directory: +*PyTest* is used to run tests for this codebase. Make sure you run them before submitting any code to a PR by executing the following from the project root directory: ``` console $ pytest ``` -Some further comments about how testing has been configured for this project: - #### Coverage *PyTest* has been configured for this project to create a coverage report after running. This report will inform the developer of what fraction of the code base is exercised by the tests and give a list of lines of code in each Python filename which has not been exercised by the tests run. @@ -174,9 +171,10 @@ Releases are generated through the *GitHub* UI. A *GitHub Workflow* has been co 4. Publish a new version of the code on [*PyPI*](https://pypi.org/). ::: {note} -If a release is flagged as a "pre-release" through the *GitHub* interface, then documentation will not be built and the project will be published on *test.PyPI.org* instead. +If a release is flagged as a "pre-release" through the *GitHub* interface, then documentation will not be built and the project will be published on *test.PyPI.org* (if configured; see [instructions here](#config-pypi)) instead. ::: +(new-release)= #### Generating a new release To generate a new release, do the following: @@ -242,80 +240,13 @@ The majority of documentation changes can be managed in one of the following 4 w 4. **Add a new Markdown file**: - Otherwise, create a new `.md` file in the `docs/content` directory and add it to the list of Markdown files referenced in `docs/index.rst`. Note that these files will be added to the documentation in the order specified, so place it in that list where you want it to appear in the final documentation. This new `.md` file should start with a top-level title (marked-up by starting a line with a single `#`; see the top of this file for an example). + Otherwise, create a new `.md` file in the `docs/content` directory and add it to the list of Markdown files referenced in `docs/index.rst`. Note that these files will be added to the documentation in the order specified, so place it in that list where you want it to appear in the final documentation. This new `.md` file should start with a top-level title (marked-up by starting a line with a single `#`; see the top of this file for an example). -5. **Extend the MyST-Parser support*** +5. **Extend the MyST-Parser support**: - New MyST-Parser extensions can be enabled in `docs/conf.py` by extending the `myst_enable_extensions` list. See the - MyST-Parser documentation for a list of available extensions and instructions on how to use them. + New MyST-Parser extensions can be enabled in `docs/conf.py` by extending the `myst_enable_extensions` list. See the MyST-Parser documentation for a list of available extensions and instructions on how to use them. #### Adding images, etc. While not strictly required, it is best practice to place any images, plots, etc. used in the documentation in the `docs/assets` directory. -## Configuring Services - -Develpers and project owners/maintainers will require accounts with one or all of the following services to work with this codebase. This section details how these services need to be configured. Following these steps should only be necessarry - or partially necessary - if a developer chooses to fork the project. - -1. [***GitHub***](https:/github.com) - - To work with this codebase, you will require a *GitHub* account ([go here to get one](https://github.com)). - - Branch permissions for the main project repository should be configured only permit merges from pull requests. To do so, navigate to `Settings->Branches->Add branch ruleset` and: - - - give the Ruleset whatever name you'd like (e.g. `Protect Main`) - - set `Enforecement status` to `Active` - - add a `Target Branch` targeting criteria by pattern and type `main` - - select `Require a pull request before merging` - - select `Require status checks to pass` and add `Run all build and unit tests` from GitHub Actions as a required check - - This will ensure that all CI/CD tests pass before a merge to the main branch can be made. - - Several secrets need to be configured by navigating to `Settings->Secrets->Actions` and adding the following: - - - To host the project documentation on *Read the Docs* (see below), the following secrets need to be set (see below for where to find these values): - - - **RTD_WEBHOOK_TOKEN**, and - - **RTD_WEBHOOK_URL** - - - To make code releases available on the **Python Package Index** (see below), then the following secret needs to be set (see below for where to find this value): - - - **PYPI_TOKEN**, - - - To test code releases with the **Test Python Package Index** (see below), then the following secret needs to be set (see below for where to find this value): - - - **TEST_PYPI_TOKEN**, - -2. [__Read the Docs__](https://readthedocs.org) - - **Read the Docs** (*RTD*) is used to build and host the project documentation. An account is needed if you are an owner/maintainer of the project and will be publishing and managing the project's documentation online, but not needed if you are simply a contributing developer. *RTD* can be configured in either of the following ways: - - 1. **By connecting *RTD* to your *GitHub* account** - - Ensure that your *GitHub* account has been connected. This is done automatically if you log into *RTD* with your *GitHub* credentials. If you logged in with your email, navigate to `->Settings->Connected Services` by clicking on "Connect Your Accounts" and click "Connect to GitHub". You know your account is linked if it is listed below under "Active Services". - - - Return to your *RTD* landing page by clicking on your account name at the top. Click "Import a Project". Your *GitHub* repository should be listed here (you may need to refresh the list if it has been created recently). Import it. - - - To obtain **RTD_WEBHOOK_TOKEN**, navigate to `->Settings->API Tokens` on *Read the Docs*. If a token has been created already, you can use it. Otherwise (or if you want a token specifically for this project), create a new one. - - - To obtain **RTD_WEBHOOK_URL**, migrate to the `Admin->Integrations` tab on the *RTD* project page. Click on your incomming webhook and get the URL there. - - 2. **By creating a Generic Webhook** - - Navigate to the `Admin->Integrations` tab on the *RTD* project page and click `Add integration`. Then select `Generic API incoming webhook` from the dropdown and click `Add integration`. - - - To obtain **RTD_WEBHOOK_URL** and **RTD_WEBHOOK_TOKEN**, migrate to the `Admin->Integrations` tab on the *RTD* project page and click on your incomming webhook. - - Once properly configured, the documentation for this project should build automatically on *RTD* every time you generate a new release (see below for instructions). - - ::: {note} - Make sure **RTD_WEBHOOK_URL** starts with `https://`. Prepend it if not. - ::: - -3. The [__Python Package Index (*PyPI*)__](https://pypi.org) - - This service is used to publish project releases. An account is needed if you are the owner of the project, but not generally needed if you are simply a contributing developer. An API token will need to be created and added to your *GitHub* project as **PYPI_TOKEN** (as detailed above). This can be generated from the *PyPI* UI by navigating to `Account Settings->Add API Token`. - - To test releases, a parallel account on *test.PyPI* is needed and a similar token to **PYPI_TOKEN** - named **TEST_PYPI_TOKEN** needs to be set, in the same way as above. To create a test release, flag it as a "pre-release" through the *GitHub* interface when you generate a release, and it will be published on *test.PyPI.org* rather than *PyPI.org*. - - ::: {note} - Although `poetry` can be used to directly publish this project to *PyPI*, users should not do this. The proper way to publish the project is through the *GitHub* interface, which leverages the *GitHub Workflows* of this project to ensure the enforcement of project standards before a new version can be created. - ::: diff --git a/{{cookiecutter.repo_name}}/docs/index.rst b/{{cookiecutter.repo_name}}/docs/index.rst index a4b522a..ff3ffa0 100644 --- a/{{cookiecutter.repo_name}}/docs/index.rst +++ b/{{cookiecutter.repo_name}}/docs/index.rst @@ -10,7 +10,8 @@ Home Getting Started API Documentation <_apidoc/{{cookiecutter.__package_name}}> - Notes for Developers + Development guidelines + Configuring services Index ===== diff --git a/{{cookiecutter.repo_name}}/pyproject.toml b/{{cookiecutter.repo_name}}/pyproject.toml index 4b298ff..f3ecdb5 100644 --- a/{{cookiecutter.repo_name}}/pyproject.toml +++ b/{{cookiecutter.repo_name}}/pyproject.toml @@ -12,26 +12,26 @@ homepage = "https://github.com/{{cookiecutter.github_login}}/{{cookiecutter.repo documentation = "https://{{cookiecutter.rtd_project_name}}.readthedocs.io/en/latest/" [tool.poetry.dependencies] -python = " >=3.11" +python = " >=3.13" rich = "^13" cookiecutter = "^2" [tool.poetry.group.docs.dependencies] -Sphinx = "^6" -sphinx-rtd-theme = "^1" -sphinx-click = "^4" +Sphinx = "^8" +sphinx-rtd-theme = "^3" +sphinx-click = "^6" sphinx-copybutton = "^0" -myst-parser = "^1" +myst-parser = "^4" [tool.poetry.group.dev.dependencies] -pytest = "^7" +pytest = "^8" pytest-mock = "^3" pytest-cookies = "^0" pytest-cov = "^5" -black = "^24" +black = "^25" ruff = "^0" mypy = "^1" -pre-commit = "^3" +pre-commit = "^4" # This configures the Poetry plugin which enables dynamic versioning via the repo tags # Note the changes that are also needed to the [build-system] config below. @@ -40,6 +40,9 @@ enable = true vcs = "git" style = "semver" +[tool.poetry.requires-plugins] +poetry-dynamic-versioning = { version = ">=1.0.0,<2.0.0", extras = ["plugin"] } + [tool.pytest.ini_options] addopts = "--cov" pythonpath = "./python" # relative to root directory @@ -96,5 +99,5 @@ ignore = [ convention = "numpy" [build-system] -requires = ["poetry-core>=1.0.0", "poetry-dynamic-versioning"] +requires = ["poetry-core>=2.0.0", "poetry-dynamic-versioning"] build-backend = "poetry_dynamic_versioning.backend"